Ecoc052027.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- -
- Assembly
- GCA_958510875.1
- Location
- OY294070.1:87267736-87268212[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-13 5.5e-11 43.7 0.0 2 40 11 49 10 53 0.95
Sequence Information
- Coding Sequence
- atGGCAAAAAGAAAGTATGGAGCGTTGAATGAAGAGGATATGGAGAGAGCTCTAGCTGCTTATAGGAACGGAGATATGGGTTTAAACCAGTGCTCTAGGCAGTACGGAATTTCAAAACCGACCCTTAAGCGTCATTTACAAAGTAATAATGTAAAGGCCAATGAAGGTACCAAAGCAATGGGGCGTCACCCTACATTACCACCCGATGTGGAGAAACAGGTTGTAGACCATCTAAAAAAAGAAGCGTGTTTTTTTGGGCTTACAATAACGGACGTGCGTAGACTCGCATTTCAAATTGCAGTTAGAAATGGTATCCCtcacatttttaatgaggagaAGCAAATCGCTGGTAAGAAGTGGTATTACAACTTCATGAAACGCCATAAGGATATCACCCTTCGTGAGCCTCAAGCAACATCCTTGGCAAGGGCACAAGGGTTTTCTAAAAAAATGTCAACGAATTCtttgaaatcttga
- Protein Sequence
- MAKRKYGALNEEDMERALAAYRNGDMGLNQCSRQYGISKPTLKRHLQSNNVKANEGTKAMGRHPTLPPDVEKQVVDHLKKEACFFGLTITDVRRLAFQIAVRNGIPHIFNEEKQIAGKKWYYNFMKRHKDITLREPQATSLARAQGFSKKMSTNSLKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01059677;
- 90% Identity
- -
- 80% Identity
- -