Ecoc019720.1
Basic Information
- Insect
- Endomychus coccineus
- Gene Symbol
- bab1
- Assembly
- GCA_958510875.1
- Location
- OY294067.1:290139440-290185040[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.1e-11 1.9e-08 35.6 0.0 3 39 362 399 360 403 0.91 2 4 1.4e-11 3.2e-09 38.1 0.1 1 39 414 452 414 455 0.95 3 4 6.2e-17 1.4e-14 55.2 0.0 1 45 469 514 469 514 0.98 4 4 1.7e-15 3.9e-13 50.6 0.0 1 40 521 561 521 565 0.92
Sequence Information
- Coding Sequence
- ATGACTTCCGTATTCCATCAACTCCTGCAAAACGAAGCTTTCGTAGACGTCACATTAGCATGTAACGACTTATCATTGAAGGCGCATAAAgtagTTCTGTCAGCTTGCTCGTCGTACTTTCAAAAACTGCTTTTGGAGAATCCATGTAAGCATCCAACCATAATCATGCCTCAAGATGTATGTTACGCTGACCTTAAGTTTATCATCGAGTTCGTCTACAAAGGAGAAATCGACGTTTCTCAGTCAGAATTACAATCTTTGCTCAGGACCGCGGACCAGCTCAAGATAAAAGGTTTGTGCGAATCACCGGAAGAAACCGAGAACAGTTTGAAACACAATCTGCGATTTCTACCAACAGGTTTAGTTAAACATCGACGGTCCGCCTCACCCAAGTCATTCAAGCTTACCAATACTAACGTcaaacataaattcaaaaaaatacgcCGTAGCAGTTCTGAAGATAAAGATAACAACAACAGTAAAGTGAGCAGTTATTCGGCTGAGGAAGATGAAGATGACATGCCAGTCAGTTTGAATGATCTCAAACGGAAGGGTGTTGAACCGGAACAAACCAAGCCACTCAATATGAGCAATCATGGAATCATGACAGGACAGACAATATTCTCACAGTTCGGAGTAGACACTGAAGACTTCCCACCAGAACCTCCCGCTCCTTCGGCCATCCCGGTGGGTCATGTGGACATGCAACACTCACCGACTAGAACATTACTCAATGACAGTTCAGTTCACAGAACGGATCTTTCGGATGCCAACGTTAAATACGATATAAAAAAAGAAGTGATAGATATAAAATTCGAAACGTTGAGGTCGTACGATCAGGATTCTCTGTTAGAGATGGATTCCCATTCTCGTATGTCGGGGACTGAACATTCTATGGATAGTCATGAAGATCCCGACCAGTCTATGCATTCCATGATGGTCACACCGGAGCTCATGGGAATGGTACCTGGAGGATCAAGTCAAGCAAATCTAAATGGAAGCAATGATTCAATGGGGAAGAATGGTCATTCTGAAGGTATGCTACCACGAGCGCATACAGGAGGACCAAAAACTTGGACGATAGAAGATATGGACTTGGCTTTAGATGCATTAAGAAATCATAATATGAGTCTAACAAAGGCTTCGGCAACTTATGGTATTCCATCCACGACTTTATGGCAGAGAGCTCACAGACTAGGTATAGATACACCAAAGAAAGAAGGACCAACCAAGTCCTGGACTGAAGAAAATCTTAATAGTGCTTTAGATGCTTTACGAACGGGTACCATATCAGCTAATAAAGCTAGTAAAGCTTATGGTATCCCAAGTAGTACATTGTACAAAATAGCCAGGAGGGAAGGAATTCGATTAGCAGCCCCGTTCAATGCAGCCCCGACCACATGGACGCCGGAAGACCTAGAAAAAGCCTTAGATTCTATTAGGTCTGGAGCAACGTCAGTACAAAAAGCATCTACGGAGTTTGGAATTCCCACGGGAACGCTGTACGGCAGGTGTAAGAGGGAGGGTATCGAATTATCGAGATCAAATCCAACCCCTTGGTCGGAAGATGCTATGGGTGAAGCCTTAGAAGCAGTCAGgtTGGGTCATATGTCAATCAACCAAGCAGCTATTCACTATAACTTACCTTATTCGTCACTATATGGAAGATTCAAAAGGGGCATCAAATACGAAACAGATAACTTAGATGGAAACTCCGATAGTCAGTCACATTTAGATACCCAGGCTTTTGGTTTAGAATATGCCAATGCCCATCAACAAATTCAATATCAAAACCAAACGAATAGCTGA
- Protein Sequence
- MTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQSELQSLLRTADQLKIKGLCESPEETENSLKHNLRFLPTGLVKHRRSASPKSFKLTNTNVKHKFKKIRRSSSEDKDNNNSKVSSYSAEEDEDDMPVSLNDLKRKGVEPEQTKPLNMSNHGIMTGQTIFSQFGVDTEDFPPEPPAPSAIPVGHVDMQHSPTRTLLNDSSVHRTDLSDANVKYDIKKEVIDIKFETLRSYDQDSLLEMDSHSRMSGTEHSMDSHEDPDQSMHSMMVTPELMGMVPGGSSQANLNGSNDSMGKNGHSEGMLPRAHTGGPKTWTIEDMDLALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALDSIRSGATSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYETDNLDGNSDSQSHLDTQAFGLEYANAHQQIQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00647323;
- 90% Identity
- iTF_00647323;
- 80% Identity
- iTF_00647323;