Efor002645.2
Basic Information
- Insect
- Encarsia formosa
- Gene Symbol
- -
- Assembly
- GCA_030522645.1
- Location
- JAPYYY010000449.1:39283-47391[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.6 1.9e+03 1.4 0.6 2 9 95 102 94 104 0.89 2 13 0.0077 2.2 10.6 1.7 1 21 123 143 123 144 0.95 3 13 0.0039 1.1 11.6 0.5 1 20 193 212 193 214 0.92 4 13 0.0004 0.12 14.7 1.7 1 23 223 246 223 246 0.96 5 13 9 2.6e+03 1.0 0.5 2 13 268 279 267 282 0.80 6 13 0.00017 0.048 15.9 2.0 1 23 293 316 293 316 0.94 7 13 9.9e-05 0.028 16.6 0.2 1 21 321 341 321 342 0.96 8 13 0.0018 0.52 12.6 3.2 1 23 349 372 349 372 0.97 9 13 0.97 2.8e+02 4.0 0.4 1 12 376 387 376 390 0.87 10 13 0.095 27 7.2 0.1 1 19 477 495 477 496 0.90 11 13 0.025 7 9.1 0.5 1 23 504 527 504 527 0.95 12 13 0.00038 0.11 14.8 4.7 1 23 533 555 533 555 0.98 13 13 4 1.2e+03 2.1 0.3 2 20 597 615 596 617 0.78
Sequence Information
- Coding Sequence
- ATGGCAGAAATTGCAAATGCTACCTTGTTGacagCAGAAGAAGAAATTATAGATTTAGATGAATGTAGTTCAGatCTTGAAGTAATTGCAATAAGTaaaagtataattgaaaaaaaacgcaaaaaaattaaaaagctacaAAAAATCAGATCCAAAGTTTACATTAATTCAGatgaacTTTCAAATAACTCAAATCCCTTACAATATAATAGAAATCATAactgcataaataaattaaacagaaAACTCAAGAAAAATGAATCACTCAGTTCAATTGAATTAAACTGTCCAAAATGcaataaaactgaaaaagtaTTTAGCGTTACAATTACCACAGAATGTGAAGATTGTAATGTAAGCATGTTTTATGTATGTGATCAATGCTCTTGTCGATTTAGAACAATGGCTGCATTATACAGGCATAAAAAGTTACAgtgtaaatcaaataaaataaaaaataaagactcAAAGAagtcAAGATTTTACTGTGTAAGATGTGCATCTTGTAAATCCATTGAAAAGTCATACAATTTAAGAAATCTAGGCCGTTGCAAGCTATGCAAAAAAGCCATGAAATTTGTGTGCAACATCTgtgacaaaaattatgaatcttaCTCAGGAATGTACAAACACAATAAAAGTCAATGTCAATCCGATTTTAAGCTCTTTTATTGTAATGATTGCGATTTCAACACTTACAATCAGAGTTTTTTACTTGCTCATATGAAACAGCAACATCCTGAGTGTTATAGACTGGATTTGTCTTGTAAAAAGTGTGTTATCACGGATATCAAACAATCTTACTGCCCCGGCTGCAAcattttttacgattacagCCACAAAAGATGCTGTTCTTCCTGTAACACCGAGTTACGCTACCAATGCAATTTCTGTTCAAAGATGTCCTCTCGACCGAGTTTGCTGATTCGTCATTTCTATCGCCAGCATGGCAAACACGTATACCCATGCAAAACCTGCGgtagaaaattttcgtttcaagGTGACGCCAATTCTCACATGAAAGTGTGTGGTGTCGGTCCTAACTACGCCTGCAAAatTTGCTTCTTCAAAACGAGATACCGATACAACATGAAAAAGCACATGCTGAGAAtacacaacaaaacattttcttGTGAACGATGCGATCGGAATTTTGAAAGCGACGAAAATGATGATAATTCTGTTGATTGTAATGACAGTGAATTAATGGGAGCAAAACCATTTGGAGAACAGAAAAGTAATTATTCTTTATCTTCCTTTCAACCTTTCATTAAGGAATTGGGTTATGAAATTTTATCTGATCAAACCGCAAAGACCTGTATCACTTGTTCCACGAAGCTACCCTCGAATCTCAAGTTCGACAAGTGCGAATCTTGCCGGTCGATGCTTCccgaaaaaatgaaattcatctCTCCAGACCAGATAAGATTTCCTTGCATAGTCTGTTCTCGTGTTTTCATCTCTGAGCAGTCGCTAAAGGCACATACACCTTGCCGGGGCAAATCTAGGTACAACTGCGCCGACTGCAGCTTCACAACCTCCTCGTCGGACGATTTCGACAGCCACGTGATTAAAAACCACGCTCTACAAACTCATTTCAAGTGCAAGCCCTGCAAGAAGATGTTCAAGACGCTCCACTCTCTTCAGATCCACCAGAAACTCCACTGCACCAAGAAGAGAAAGGCCTACTATTGTGCCCACTGCTCGTACAGGTGCTACAACAAGAGGGAGAAAATCTTGGACCACCTCAGGTACTACCACCTACATCTGTTTACCGGGAAAATGTTGAGCTGTCAGAAGTGCGGTACCAAGTGGtcgaatattttcaaattcaacgatCACCTGGGAACTTGCAGCGGAAACTACGAGGTTGAGTTGGAAAAGCAAAGGGGCATGAAGATGTACCCATGA
- Protein Sequence
- MAEIANATLLTAEEEIIDLDECSSDLEVIAISKSIIEKKRKKIKKLQKIRSKVYINSDELSNNSNPLQYNRNHNCINKLNRKLKKNESLSSIELNCPKCNKTEKVFSVTITTECEDCNVSMFYVCDQCSCRFRTMAALYRHKKLQCKSNKIKNKDSKKSRFYCVRCASCKSIEKSYNLRNLGRCKLCKKAMKFVCNICDKNYESYSGMYKHNKSQCQSDFKLFYCNDCDFNTYNQSFLLAHMKQQHPECYRLDLSCKKCVITDIKQSYCPGCNIFYDYSHKRCCSSCNTELRYQCNFCSKMSSRPSLLIRHFYRQHGKHVYPCKTCGRKFSFQGDANSHMKVCGVGPNYACKICFFKTRYRYNMKKHMLRIHNKTFSCERCDRNFESDENDDNSVDCNDSELMGAKPFGEQKSNYSLSSFQPFIKELGYEILSDQTAKTCITCSTKLPSNLKFDKCESCRSMLPEKMKFISPDQIRFPCIVCSRVFISEQSLKAHTPCRGKSRYNCADCSFTTSSSDDFDSHVIKNHALQTHFKCKPCKKMFKTLHSLQIHQKLHCTKKRKAYYCAHCSYRCYNKREKILDHLRYYHLHLFTGKMLSCQKCGTKWSNIFKFNDHLGTCSGNYEVELEKQRGMKMYP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -