Efor006251.1
Basic Information
- Insect
- Encarsia formosa
- Gene Symbol
- SDR-1
- Assembly
- GCA_030522645.1
- Location
- JAPYYY010001377.1:10198-17728[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.009 2.6 10.4 5.6 1 23 3 26 3 26 0.94 2 21 0.00023 0.066 15.4 0.4 3 21 32 50 31 51 0.95 3 21 2.9 8.3e+02 2.5 0.4 1 21 63 83 63 84 0.93 4 21 3.2 9.3e+02 2.4 1.4 2 10 93 101 92 101 0.93 5 21 0.12 35 6.9 2.0 1 23 127 150 127 150 0.92 6 21 2.3 6.5e+02 2.9 0.2 1 21 200 220 200 221 0.94 7 21 0.27 78 5.8 3.0 1 23 229 252 229 252 0.96 8 21 6.2 1.8e+03 1.5 1.8 2 21 261 277 261 278 0.81 9 21 0.034 9.7 8.6 0.2 1 21 292 312 292 313 0.94 10 21 0.0023 0.66 12.3 3.8 1 23 356 379 356 379 0.95 11 21 0.02 5.8 9.3 0.4 1 21 534 554 534 555 0.94 12 21 0.17 48 6.4 1.3 1 23 562 585 562 585 0.95 13 21 0.016 4.5 9.7 1.4 2 21 601 620 600 621 0.93 14 21 2.2 6.2e+02 2.9 0.1 5 23 639 658 638 658 0.89 15 21 2.1e-05 0.0059 18.7 0.4 3 22 668 687 667 687 0.96 16 21 0.00052 0.15 14.3 0.6 1 21 721 741 721 742 0.93 17 21 0.004 1.1 11.5 1.3 1 23 756 779 756 779 0.98 18 21 7.8 2.2e+03 1.2 0.5 2 18 788 804 788 804 0.89 19 21 0.02 5.8 9.3 0.4 1 21 815 835 815 836 0.96 20 21 0.0065 1.9 10.9 8.7 2 23 845 867 844 867 0.96 21 21 0.00014 0.039 16.1 3.8 2 23 876 899 875 899 0.91
Sequence Information
- Coding Sequence
- ATGCGTTACTCGTGCCGAGGTTGCGATTACAAAACCGACCACAAATCACACTTCAGGAGGCACGTCCAAGCCAAACATTTTGAACGAAACAATTGCACAAAGTGCAATAAAAACTTTCCAAGTCCACCAGACCtaagaaaacatttaaaactatGCGGTTTGTCAAATGAACAGAAGAGTTCGCGTTACTCGTGCATTGGTTGCGATTACAAAACCGAGCACAAATCCCGGATCGTAAGACATCTTCGAGCTTCGCTTCAAGATACAAACTCAATGAGGTGTACtaaatgtgataaaaaatttttatgtttctttcCCCTGAGATCTCATTCGAAAATCTGTGGCCTGTCGGTGGAAGAAAAGCGTTCTTTGATGCGCTTCTCTTGCATCGATTGCAGTTACAAAACTTCTCAGAAGTCGCATATCGTCAGGCACATCCAAGCTAAACATGCACCAAAAAAGTGGCCAGAGCATcttgTTACAGATAACAATATGATAGATGACAACGTGCTGGTTTGCTGCACGATTTGCAACAAACTATGGAAGAATCTCTCTCGAGATGAAAAATCATGTATCTCGTGTGGCTCGGCTTTCACATACAAGTGCGGAACCTGTATGAGAGGCTACTCAAAGATACAGCCATTGATGAAGCACCAGAATCTATACTGCACCAGAGAACCAAAATTCAGCTGTGAAAAATGTCTTTTCAAGAGTCACAGTAAGAAAGATCTCTCTAGACACATTGAATCAGATCACTCGGTTCGAGATTCCAACGCAAACACTTGCTTAAAGTGCAAAAAGACATTTTTACACTTGAAATTGCATTTGAGAATCTGTGGTCTTTCGGAGAAAGCGAAGCGTTCGATGATGCGATACTCCTGCAACGGTTGCGACTACAAAACAAACATCAAATCGCGTCTTATGAAACATGTCCAAGCTTCGTTTCAAGACACAATCTCAAACAAGTGCACGAAATGTGATCAGAAGTTTTTGTGTTTGTTCGCACTGAGATCTCATTCGGTAATCTGTGGTCTGTCGGAAAAAGAAAAGCGTTCTCTCAAGCGCTTCTCGTGCGCTGATTGTGATTACAAAAGTAACTACAAGTCCCATTTTAGGAGACACCTTCAAGCTAGACACGCTAAAGATTTGCCACAGTGGCCTGtTATTGTAGCAGATCATAGTACGACCAATGTTGCTGACGAAAATATTGATGTGGGACACGAATTAAAAACTGAGTCTTTCAGGGTTGAAAATTTTGGCGATGATCAAACGGAACCATCTtGTTACAGCAATGATCTTTTTGAAAACATTGAAATTGGGCATGAACTTTGTGAATTCAAACCAGAATCTTCCGGAATTGGAAAAATAGATCAATCAGAGCCTTCTCTTTTCGAGAATATTGaatttgaacacgaattttcaACTGGCTCTTCgatgattgaaaaaatcagCAAAAAAGAGCCTTTCGAGAACATTGATATTGGACATGAATTCAAAACTGAATCCTtcgatGAAAAGCTGGCTTACTGCTccaaatgtaataaaaattggaACTATGAAACGGAAAAATCCTGTGGCATATGTGGATCGGATATCAGGTACcagtgtaaaaaatgtaaaaaaatctacgacTCGATTTTATCGCTAAGCCAACACTTGCAAGGTGGTTGCAAAGAATTCAAGTTTCGGTGTGCCCACTGCGATTACAAGAGCCAGTACGAAAGCGACGTCGTGCAGCATATAAAAGCAAAACACGTAGACCAAAATTCAGTTTCATACAAGTGTAATCCCGAAGTGACCGAATGCAGTCTTTGTCGGAAAAAATTGTCGAATTCATTCTCCCTGAAGAGACATTTCAAAGTTTGTGGTCAGACCAAAGACAAAATCAGTGCGTTGATGCATTACTCGAGCGACTACTGTCAGTTCAAAACTAAATCGAAGGAAAATCTTGGCGAACACATTGATGCGATACATTTACCAAACGATCTGAGTTCGAATGCTTGCAGTGAATGCGGTAAAAATTTCACCAGAAAAGTAAGCTACGAAAGACATTTGAAAACTTGTGGTCAGTCGACAATTAACTTGAGTCACTCTAATGAGAATTTCGCGGACCAAACTGGtgaaaaagcgaaaaaaaattcttcccgCAGGGAAAATTCATACCTATGTAAACGATGCGCAAAGTCCTTCTCGACCAAATCAGGCTTGAGCGTGCATTTAAAATACTGTGGTCAATCGGAAGAAAGAAAGCTTGCACTGAGGCGTTTTCCGTGCAGTTATTGCAATTACAAAACTGATTTTAAAGCCTTTCTTGACAGACACATCAAGACTGAACACAGTGACAAAGATTTCAAAATTGCTTACTGCCCCAAGTGTCAAATAACTCGTAATTACCATCGAAATTTGAGGAAATCGTGCCACAGATGCAATACAGCTTTCCGGTACAAGTGCGCAAAATGTACGAAAGACTACTCAAAGATCAAGTTATTGCTCATTCACATTAAACAATACTGCCAAAGAGAAATAATATTGAACTGTGATCATTGCGACTACACAACTTCTCGTAAGCATCATTTTTTTCGACACGTTCAGACAAAACACATGCCCAGAGATCCAGAATTGAACAAATGCAACAAGTGTGGTAAAAATTTCGCGGAAAAAAGAAATCTTTCGAGACATTTGAAAGTTTGCAATCACATTGAAGGTTCGAGCCACGaagaTATGACAGCAAATTTACCTGAACCTGATTATGAATTGAGCATTTCAGAAGATTTTAAGTCAAATTCACCTGAACCTGATCATGAATTGAGCATTTCAgaagattttaaatcaaatttacctGAACCTGATCATGTATTAAACATTTCAGAAGATTTTAAAGCAAATTTACCGGAACTTCATCATGAATTGGATCTATCAGAAGTTATAATATCAAATTCACATGAATCTGAGCCTGATCATGAATCAAACCTTTCAGAACATGTTCAAGCAAATGATGTAATCAAGCCTTTATACGTCTTTTTAAACAGATCAGCCGAGTctcagaaaaGGAAAAGTTGCGGTCGAGCTGGAATCATCGCGCAGGCGGTCGCCAACTTATTGGCTGAAAATGGGTTGATCGTGATTGGTTTGGCACGAAGAAAACAGGAAAATTTCAAAGGGCCTGGTAAGTTCTACCCCAAAGAGTGCGACATTTCAAACAACGAAGACGTCGGGAAAGCTTTTGATTGGATCCAGGAAAATTTTAGATCCGTTGACGTATTGGTGAACAATGCCGGTGTCAGCAATCTGCAAACCATTcgaaaaGCTTCGCCAGAATATTTAGAACAAGCTTTCAAAGTCAACGTCATCGGTGTTATGTactgcacaaaaaaatttatggaaatttatgaaaaaaatgatgttaaaaGAGAATCGCACATTGTAAACATAAACAGtaCTCTCGGTCATTGGACGCCTTCCAATCCACAATTAAACGTTTACCCAGCAACAAAATTCGCATCCAGAATCATGGCAGACTCGTTGAGGCTGGAATTTCAGAAAACCAAAATTCGCATTAcgaaTGTAAGCCCGGGGTTTGTAAGAACACAGTTGCTGGAAAACGCCGCGAAGAAAATTCCTGAATTGATGGAAGAACCAGCTTTGGCGCCTGAAGAGCTCGCCGATGCCGTAGTTTACGCGCTCGGGCTTCCGGCTCACATTGAGATCAACGAACTTATTATACAAGCAAAAGCTACTTGA
- Protein Sequence
- MRYSCRGCDYKTDHKSHFRRHVQAKHFERNNCTKCNKNFPSPPDLRKHLKLCGLSNEQKSSRYSCIGCDYKTEHKSRIVRHLRASLQDTNSMRCTKCDKKFLCFFPLRSHSKICGLSVEEKRSLMRFSCIDCSYKTSQKSHIVRHIQAKHAPKKWPEHLVTDNNMIDDNVLVCCTICNKLWKNLSRDEKSCISCGSAFTYKCGTCMRGYSKIQPLMKHQNLYCTREPKFSCEKCLFKSHSKKDLSRHIESDHSVRDSNANTCLKCKKTFLHLKLHLRICGLSEKAKRSMMRYSCNGCDYKTNIKSRLMKHVQASFQDTISNKCTKCDQKFLCLFALRSHSVICGLSEKEKRSLKRFSCADCDYKSNYKSHFRRHLQARHAKDLPQWPVIVADHSTTNVADENIDVGHELKTESFRVENFGDDQTEPSCYSNDLFENIEIGHELCEFKPESSGIGKIDQSEPSLFENIEFEHEFSTGSSMIEKISKKEPFENIDIGHEFKTESFDEKLAYCSKCNKNWNYETEKSCGICGSDIRYQCKKCKKIYDSILSLSQHLQGGCKEFKFRCAHCDYKSQYESDVVQHIKAKHVDQNSVSYKCNPEVTECSLCRKKLSNSFSLKRHFKVCGQTKDKISALMHYSSDYCQFKTKSKENLGEHIDAIHLPNDLSSNACSECGKNFTRKVSYERHLKTCGQSTINLSHSNENFADQTGEKAKKNSSRRENSYLCKRCAKSFSTKSGLSVHLKYCGQSEERKLALRRFPCSYCNYKTDFKAFLDRHIKTEHSDKDFKIAYCPKCQITRNYHRNLRKSCHRCNTAFRYKCAKCTKDYSKIKLLLIHIKQYCQREIILNCDHCDYTTSRKHHFFRHVQTKHMPRDPELNKCNKCGKNFAEKRNLSRHLKVCNHIEGSSHEDMTANLPEPDYELSISEDFKSNSPEPDHELSISEDFKSNLPEPDHVLNISEDFKANLPELHHELDLSEVIISNSHESEPDHESNLSEHVQANDVIKPLYVFLNRSAESQKRKSCGRAGIIAQAVANLLAENGLIVIGLARRKQENFKGPGKFYPKECDISNNEDVGKAFDWIQENFRSVDVLVNNAGVSNLQTIRKASPEYLEQAFKVNVIGVMYCTKKFMEIYEKNDVKRESHIVNINSTLGHWTPSNPQLNVYPATKFASRIMADSLRLEFQKTKIRITNVSPGFVRTQLLENAAKKIPELMEEPALAPEELADAVVYALGLPAHIEINELIIQAKAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -