Efor004794.1
Basic Information
- Insect
- Encarsia formosa
- Gene Symbol
- -
- Assembly
- GCA_030522645.1
- Location
- JAPYYY010000948.1:17421-22524[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.1 29 7.1 3.8 1 23 59 82 59 82 0.96 2 16 0.0032 0.91 11.8 0.8 1 21 88 108 88 109 0.95 3 16 0.00091 0.26 13.6 0.9 2 23 125 147 124 147 0.94 4 16 0.0045 1.3 11.4 0.4 1 21 155 175 155 176 0.94 5 16 0.0016 0.46 12.8 5.3 1 23 190 213 190 213 0.97 6 16 0.031 8.7 8.8 3.4 2 23 245 267 244 267 0.94 7 16 0.00022 0.062 15.5 1.1 1 21 274 294 274 295 0.94 8 16 0.0037 1 11.7 0.6 1 23 303 326 303 326 0.95 9 16 0.00091 0.26 13.6 0.9 2 21 335 354 335 355 0.94 10 16 0.0021 0.6 12.4 2.6 2 23 362 384 361 384 0.94 11 16 0.016 4.6 9.6 1.3 1 19 466 484 466 487 0.95 12 16 0.0018 0.51 12.6 4.2 1 23 494 517 494 517 0.96 13 16 0.15 42 6.6 5.1 1 23 537 560 537 560 0.95 14 16 0.17 48 6.4 0.4 1 23 579 602 579 602 0.92 15 16 0.31 89 5.6 2.0 1 23 631 654 631 654 0.95 16 16 0.00012 0.033 16.4 0.1 2 21 712 731 711 732 0.94
Sequence Information
- Coding Sequence
- ATGACTGTTTCAGAAAACGGTTTTCAATGTTTTGATGGAATTGAAGGAATTGAAATAGGGAACGAATTCAAAACCGAATTTCCAGGAATCAAACCAACTAATTCAGACTTTTCAAATGCACCTAactcAAGTTTAAGCAATCActtgaaaaacttttgtaataaacaaccAAGATATCGCTGTGAGCAATGCAATCACGTGACCCATTACAGATACAAACTGGTTGAACACATTCAAGCGAAACATCGACTCCAAAATCTGTTCACATGTCCGCACTGTCAGAAAAACATGGCTTATGCGCATGGTTTGAAAAGGCACCTTCAAATCTGTGGCAAGTCCAAAAGTTTGAAGAGGTCTCGATTGAAGAATCTACAATGCGATCACTGTAACTACAAAACCAATAACAAAGAATTACTCGCCGTACACATTCAGGCTAAGCATCTACCCCGCCAACCTCCATCGCACGAGTGCCCCGGATGTTTAAAAAAGTACGCGTCCGAACGAGGCCTGAAGAAACATTCGAGACTCTGCGGCCTTTCGAAAGAACGAAATCATCCGTCGATGCCTTACGCTTGCGACTTTTGCGAACACAGAAGTAACTACAGGTATCATCTCAGGAGGCACATGCGCGTTATGCATCCGACAGCGAACCTTACAATCTCAGAGAACAataaaaatctcgaaaatttcATCAGGAAACGCGTATACAACCTGTGCCGGACAAAGCTCTTGTACTGCGATCACTGCAGGTTCAAAACGAATAAGAAATCAAACCTCGCCGATCACATATTCTCCAAGCACTTCGAAACCCCAAACTCCTACGaatgtaaaaattgtagaaaaactTTTTCCCAAATTGGGTCCTTCACGAGGCACTCGAAAATCTGCGTTGCCAGACTCAAGCGTTTTTCTTGCGATCACTGCGACTACGAAACCTCAGTCAAGGGGTCAATGGTGGTCCACATGCAAGCCAAGCATCTACCTCGGGATCCCAATTCGAACAGGTGCGACAAGTGCGCCAAAAGTTTTGTCAACCGAGGAAGCTTGAATTATCATCGGAAACGTTGTGCCTTGAAATGGCTACACTGTGATCATTGCGGGTACAACTCTGAGAAGAAGAGAGACCTCGCGAGACACATGCAGCTGGAACATCTTACTCAGCTGGTACTTTTGACCAATATCACCGTGAAGCGGGGAGTCCAAAAGTTGGAGGCTGACAATCGTTACATGTTAGCTTGGAAGCTGCTGGATATTATTGTGGaaagtttGGGACCTAAAAACGATCCAAATCGCGAAGAGACTGATTCAATGATAAATTATGCCCCAGAAATAAGAAATGAGCTCGGAGAGATCTGCGTTTACGAAAAGATATGCGTTTACAAATCGGTTTTCGTGTACAAGTGCGGCAAGTGTACGAAACTGTACTCCACCATCGAATCCTTGAAAACCCACTTCACCTACTGCAGCACCTCCCCGAAGTTCTCCTGCGACCACTGCGACTACAAGACCTACCGCAAGGTGACCCTGAAGATTCACTTGAAGTACCAGCACCCGTTCGGCGTATCCGACGACGAAGACTCTGCCCCGACAAAACGTCCCCGCAAGAGGTTCTTCTGCGAGCAGTGCTGGTACAAAACCCACCGCCAGGACTACCTGGAGCACCACGTCAAGCTCAGGCATCCTTCGATAGACTCGTACCTGGAGCCGAACAAGCCCAAGCCCTACAGGCACAAGTTTGCCTGCGACAAGTGCGACTTCAAGACCTACCGCGGGGACTACCTCGACCTCCACATGGAAGCGAAACACCTGCTGACTCCCCTAACATTTTCAAGAAACGACAAGAAGAAGAACTCCGAGAAACAGGTGCTCAGAAAACCTCAGAACTTCAAGTTCTTCTGCGAGAAGTGCAGGTTCAAGACAGAGAAAGAGGTTTACCTGGAGAGGCACGTCAAGCTCAAGCACCCGCACGGCGATGCGAATCAGCCCAAGGTTTGGCCGAAGCTCATGCCCAGGCCGGATTACCTGGAAGTGCAGTTTCAAGTTCAGAACATCGGCTGTAAGCACTGCGAATTCAAGACCCACGACGACAAAGTTCTGGCTTCCCACGTAAGACAGACCCACCCGGAGCTCCTAACGTGCTTTACTTGCAACAAGGTGTTCGTCAGTCCGGGAGGCTTGAAGACGCATTTGAGAAATCTAAGGTGCAAGGCCTAG
- Protein Sequence
- MTVSENGFQCFDGIEGIEIGNEFKTEFPGIKPTNSDFSNAPNSSLSNHLKNFCNKQPRYRCEQCNHVTHYRYKLVEHIQAKHRLQNLFTCPHCQKNMAYAHGLKRHLQICGKSKSLKRSRLKNLQCDHCNYKTNNKELLAVHIQAKHLPRQPPSHECPGCLKKYASERGLKKHSRLCGLSKERNHPSMPYACDFCEHRSNYRYHLRRHMRVMHPTANLTISENNKNLENFIRKRVYNLCRTKLLYCDHCRFKTNKKSNLADHIFSKHFETPNSYECKNCRKTFSQIGSFTRHSKICVARLKRFSCDHCDYETSVKGSMVVHMQAKHLPRDPNSNRCDKCAKSFVNRGSLNYHRKRCALKWLHCDHCGYNSEKKRDLARHMQLEHLTQLVLLTNITVKRGVQKLEADNRYMLAWKLLDIIVESLGPKNDPNREETDSMINYAPEIRNELGEICVYEKICVYKSVFVYKCGKCTKLYSTIESLKTHFTYCSTSPKFSCDHCDYKTYRKVTLKIHLKYQHPFGVSDDEDSAPTKRPRKRFFCEQCWYKTHRQDYLEHHVKLRHPSIDSYLEPNKPKPYRHKFACDKCDFKTYRGDYLDLHMEAKHLLTPLTFSRNDKKKNSEKQVLRKPQNFKFFCEKCRFKTEKEVYLERHVKLKHPHGDANQPKVWPKLMPRPDYLEVQFQVQNIGCKHCEFKTHDDKVLASHVRQTHPELLTCFTCNKVFVSPGGLKTHLRNLRCKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -