Efor006659.1
Basic Information
- Insect
- Encarsia formosa
- Gene Symbol
- -
- Assembly
- GCA_030522645.1
- Location
- JAPYYY010001496.1:15436-21053[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.1 1.4e+03 1.8 6.5 2 23 246 268 245 268 0.96 2 20 0.086 25 7.3 5.5 1 23 349 371 349 371 0.98 3 20 0.0039 1.1 11.6 0.8 1 23 420 442 420 442 0.97 4 20 0.041 12 8.4 0.3 1 20 480 499 480 501 0.94 5 20 0.18 52 6.3 1.7 2 23 542 563 541 563 0.97 6 20 0.00048 0.14 14.4 0.1 1 23 603 625 603 625 0.97 7 20 8.1e-05 0.023 16.9 0.3 1 23 631 653 631 653 0.98 8 20 4.7e-06 0.0013 20.8 2.7 1 23 690 713 690 713 0.96 9 20 0.00095 0.27 13.5 2.1 2 23 721 743 720 743 0.96 10 20 0.00028 0.081 15.2 0.6 2 19 769 786 768 791 0.89 11 20 9.9e-05 0.028 16.6 2.1 1 23 839 861 839 861 0.93 12 20 1.2 3.4e+02 3.7 0.1 2 20 934 952 933 956 0.94 13 20 0.0078 2.2 10.6 0.1 2 23 973 994 972 994 0.96 14 20 0.002 0.57 12.5 4.2 1 23 1026 1048 1026 1048 0.97 15 20 0.014 3.9 9.8 1.8 3 21 1070 1088 1069 1092 0.86 16 20 0.015 4.2 9.8 0.4 2 23 1163 1185 1162 1185 0.94 17 20 0.0011 0.31 13.3 5.1 1 23 1217 1240 1217 1240 0.91 18 20 0.058 16 7.9 0.0 1 23 1247 1271 1247 1271 0.90 19 20 0.34 99 5.4 3.9 1 23 1276 1299 1276 1299 0.95 20 20 0.012 3.4 10.1 0.3 3 23 1331 1352 1329 1352 0.95
Sequence Information
- Coding Sequence
- ATGATTGACGAAGACGACAGTTTGGAAAACGCCTGCAGACTTTGTCTAACGACCGAGCAGACCCGTACATCGATATTCGGTGTTCCAAACGTGTCTCTGCCCTTCGTGGACAAGATAAGCACTTGTCTGGCGATACAGGTATCAGCAGATGACAAATTCCCAACAGTGGTATGCACAACAtgcataaacaaaataaaccaGTGGTACTCCTACAAGGACATATGCTCACAGTCACAACAAAAACTCCAGCAATGGTTCACAAAGAAATTTGTGACCATCAAATCAGAACCAGTGGACTACGAATACTCGGATGGAAGTGTGCAGCTTCTAGAAGAAAGCGTAAATGAGGCTGTGTCCAATTCAAACAGTATGGATGTTGACCCTATAACTAGTGAAGACGTACCCACTGTAAGTAACTCCACAAATGACACCGCTACAGTAGTCGAAGAACTCCAACAATCTCCTGCCGTTGAAGTCATGAATCAAGATTCTTCACCACTGGTACAAGTGAAAATTGAACCAGTGGACACTGAGGATGACGAGGATGACTACGAGGAGGACACTCCACCCGATGATGGTGAGCCAAGGAAAGAACTTTTACTAAATCCATTGGCTAAAAACAGAATCATAGAAGCTGACTCTACTCAGAAGTTGGTTACGAAGAGAGTGGTTACCAAGAAGAAGATCAGACGCAGCACTCGTACTCACTTCAAAGGAGtcaaattattcaagaaaaagtgtcttcattgtaaaataaatcTACACTCAAAATTTTCCTACCAGCAGCACATGCTCAAGTACCACGGAATCAGCGTCACAAGGCCAATTACCGGAACCAGTCAAGTTTTGAGTCTTCAAAATTACTCTGACAACCTCAAACAAGTCGAGGTCAAGAACAAAGTAGAGCCAGTTCCCAAAGACACCAATATCCAGCCCACGGTACACTCGCTAAATGACGTTACAGACGAGAAAGAGTACGAAAAGATGATCGAGTCGAATCGACTCACACCACTGCAGATTAACATTATAAGCCAGCTTAAGACGTTCTCCTGCTACACCTGTAAGACAAGTTTCTTCGACCGTAGGCACACCCTCAACCACATCAGACTCCACACCCCAGATCTACGACCTTTCACCTGCATAGCTTGCCTCACAGCCTTCTCCGATCGATCCATGTACAAACTCCACTGTAACGCTTCCTTCGAGTGCGCTCTAAACATAGCCCTCGTGGTCCCGGAGTCGGGCGAGGAGAAGTACTTCACCTGCAACATGTGCCTCAGGTCGTTTAATAACAGAAAGGAGATACTCGACCACATATACATACACTCGCACAAGCAGGGTCAGAAGTCTCAGAAGCCACTACCCAAGCTGAAGCCCATAGCGGCCCTTTCCACCACCTCGGCGGGTCCTTATGCGAACGGCGATCCGGCCCACAACCACGAGTGCGACCTGTGCGGAATGATCTACAAGTACCGACCGAACGTGTTTAAGCACCGGGAGCTCTGTCTCACCCTGCCCGAGCACATAAGGACGTCCTACAGGTGCGCTCACTGCAGCATGACCTACCTCGTCTTTCAAAAGTTCTACACGCACATATACACCGAGCATAAGACCAGGGTCATAACCTGCTACACCTGCCGGGCGATGTTCCAGTCGTCCGACGACTACCTCACCCACCACGAGACCCACAGGGTTATCTCTAAAAAAGACCCCCAGGTGGAGAACTCGAAACTCGAGGAGCAGGAACAGGAAGAAGAGGTCGACGAGTCCGTGACCCCGGCCACAGTCGTCGACCCTGACAAGCCCTTTAACTGCGCCCTTTGCAACGAGAGTTTCCCCACCCCCGCCGAACTATCTGAGCATCGGAACCTTCATCTCAAGGTCAAGATATACTCCTGCGTCATATGCAGGAACATGTTCAGCAACGCCAGCACCCTTGCCCAGCATATGAAGGAACATGGTATCGACGACCAGGCTGAAAAACTCAACCTGGAGGGTGCCAACGAGACGAATCCTACTGCTGCTACTGGGTTCAATAGCTCCTTACTCACGGATTCCAGTCGCAGGCATAAGTGCCCCTATTGTCCCAAGaccttCTCGAATTATCCGAACATGAAGAGACACGAGAGGAATTTACACGTGCGAAGGAAGCGCCGCTGGAGCTGTCATCTCTGCAAACGACGATTCAAGTCCGCTGATTTTTACGAGAACCATCTGAAAATTGATCACGGATCTAACAAGCCTCCTCAGCCCgCTGCACCCGTGGCAACCCAAGTATCGCCGTCGACCGGCAGGCCCATGCTGCAGTGCCCCAAGTGTCCCCGTACTTTCGCCTACCAGGGTAATCTGATTATCCACTGCCAGAACATCCACAAGGAGAACCACTTTGAGCGAGCCATGGCCAACGCGACTGCACCGGTTATTCAGCCGAAGTCGCTTCCGCCTCCGCCACCGATAATTCCGGCCCCCGCGGCACGAACGCCTTTACCCAAGACTGCAGGAAACTCACAGGGACACTCCTGCGACATTTGCGGCAAGACATTCCGCGAGGAGCACTCGCTGAAGGTCCACCGTGGGTGGCATCTGCGTGCCAACATGCGTCTGAAGTCGGACCTGAACAACATGAACAACATAAACAACATGAACCACCTGAGGGTCGACGAGAACGCCTTGATACCCGAGATCACGATTACTCCGGTTCCCCAGGTCGTGTCAACCAGCTCGCCCAAGCCGGCCAAGGCCAGAAAGTCCTTCCCGAACATACCTCCTCTGAAGCAACTCGAGAAGATCGCTAGTCTTCAGTGCCAGGTGTGCGCCGACAAATTCTCCGATGTGGCCGAGCTCAGGAACCACCTCTGGAACGTCCACTGCTCCAAAAACAAGCCACTGTCTATTCCCGACGAGAGGACCGACCTACAGTGCGAGCTGTGTTCCGTCAAGGTCTCCGACGAGGTTTCTTTGGAGAACCACATGAAGTGGCACGCTCAGAATCCCACAATTAGCAACAGCCACCAGCAGAACAATCACGAGGACAGCATCGTATCCGAGAGCAGCCTCGTTGATCCGTCTCAGCCCTTCCACTGCGACATTTGTGgCAAGTTCTACAGCAACCAAAAGGTTTTCCTGCGTCACAAAAAGCTTCACAAGGTTCTACCTCCCAAAGCCATCATGAACTTCCAGTCTCTGCACTCTTCGAAGCGTAACTACTGTCAGCCTTGCAACCGCTCGTTCTCCACCGAGGCGTCCCTTAAGCGTCACAAGGCATCCCCGTGTCACGTATACGCAGTCCGAGCTAGCCAGCAGATGCAGGCCCCCGAGTCCTCGAGGAAGATCACCACGACCGCCATGGTCCATTGTCCTCCCGCTGAGCCCATGGAGTTCATATCGGAAATAAAGCAGGAACCCGACACCGAGGACCCGCCGATGGACGACACAACTCACATCTACGAACCCGAGCAGCAGCCCCTTCAGAAGAAGAGACCTGTTAGGTGTCACATATGCGAGGTCGTTTTTCCGAACATGAGCGTTCTCTACAAGCACAAGCAGCTCGTGCACAGCAAAGTGCCTTATGCCGCGCCCGGTACCGCCAAATCAGGGACCTCCGAGACGAAACTGAGTATCATGCCCATCGTAACCACGGACGGTCTGTATTGCTGCAACGTATGCGGTAAGAAATTCCCCGGGTTGTCTAACCTCAAGCAGCACTTCTCCCACAAGCACAAGCCCAAAACCGTGAGCTTCATCTGCTACGCGCCCGGATGCAAGATGGTCTTTCCCAGCGCCAACGCCCTCAAGATGCACGAGGGCACCCACTCCAGCGTAATATTCAACTGCAACATGTGCGATAGACACGTGTTCACCAGGAACGCCATAATAAAGCACATGCACAACACCCACAAGGCTATTTACCAGTCTGGAGCCAGTCAGTCGGCCCTGTGGACCGAGACCGACCTGACGAACTACAACGTTAAGAACTGCCAGAGCACCGCTTGCCCCAAGTGCAAGGTCAAGTACCCAAATCTGAGGGCCCTCAAGATACATTACCTCAAGTATCATGACAAAAAgtcagagtaa
- Protein Sequence
- MIDEDDSLENACRLCLTTEQTRTSIFGVPNVSLPFVDKISTCLAIQVSADDKFPTVVCTTCINKINQWYSYKDICSQSQQKLQQWFTKKFVTIKSEPVDYEYSDGSVQLLEESVNEAVSNSNSMDVDPITSEDVPTVSNSTNDTATVVEELQQSPAVEVMNQDSSPLVQVKIEPVDTEDDEDDYEEDTPPDDGEPRKELLLNPLAKNRIIEADSTQKLVTKRVVTKKKIRRSTRTHFKGVKLFKKKCLHCKINLHSKFSYQQHMLKYHGISVTRPITGTSQVLSLQNYSDNLKQVEVKNKVEPVPKDTNIQPTVHSLNDVTDEKEYEKMIESNRLTPLQINIISQLKTFSCYTCKTSFFDRRHTLNHIRLHTPDLRPFTCIACLTAFSDRSMYKLHCNASFECALNIALVVPESGEEKYFTCNMCLRSFNNRKEILDHIYIHSHKQGQKSQKPLPKLKPIAALSTTSAGPYANGDPAHNHECDLCGMIYKYRPNVFKHRELCLTLPEHIRTSYRCAHCSMTYLVFQKFYTHIYTEHKTRVITCYTCRAMFQSSDDYLTHHETHRVISKKDPQVENSKLEEQEQEEEVDESVTPATVVDPDKPFNCALCNESFPTPAELSEHRNLHLKVKIYSCVICRNMFSNASTLAQHMKEHGIDDQAEKLNLEGANETNPTAATGFNSSLLTDSSRRHKCPYCPKTFSNYPNMKRHERNLHVRRKRRWSCHLCKRRFKSADFYENHLKIDHGSNKPPQPAAPVATQVSPSTGRPMLQCPKCPRTFAYQGNLIIHCQNIHKENHFERAMANATAPVIQPKSLPPPPPIIPAPAARTPLPKTAGNSQGHSCDICGKTFREEHSLKVHRGWHLRANMRLKSDLNNMNNINNMNHLRVDENALIPEITITPVPQVVSTSSPKPAKARKSFPNIPPLKQLEKIASLQCQVCADKFSDVAELRNHLWNVHCSKNKPLSIPDERTDLQCELCSVKVSDEVSLENHMKWHAQNPTISNSHQQNNHEDSIVSESSLVDPSQPFHCDICGKFYSNQKVFLRHKKLHKVLPPKAIMNFQSLHSSKRNYCQPCNRSFSTEASLKRHKASPCHVYAVRASQQMQAPESSRKITTTAMVHCPPAEPMEFISEIKQEPDTEDPPMDDTTHIYEPEQQPLQKKRPVRCHICEVVFPNMSVLYKHKQLVHSKVPYAAPGTAKSGTSETKLSIMPIVTTDGLYCCNVCGKKFPGLSNLKQHFSHKHKPKTVSFICYAPGCKMVFPSANALKMHEGTHSSVIFNCNMCDRHVFTRNAIIKHMHNTHKAIYQSGASQSALWTETDLTNYNVKNCQSTACPKCKVKYPNLRALKIHYLKYHDKKSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -