Efor001054.1
Basic Information
- Insect
- Encarsia formosa
- Gene Symbol
- -
- Assembly
- GCA_030522645.1
- Location
- JAPYYY010000151.1:28400-31754[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.5 4.2e+02 3.5 1.2 1 23 403 425 403 425 0.78 2 17 0.19 56 6.2 2.4 1 19 431 449 431 452 0.91 3 17 0.05 14 8.1 1.4 2 23 458 479 457 479 0.96 4 17 0.0026 0.74 12.1 1.8 3 23 488 509 487 509 0.98 5 17 0.0017 0.49 12.7 1.6 1 23 516 539 516 539 0.96 6 17 0.00028 0.079 15.2 1.5 1 23 545 568 545 568 0.94 7 17 0.74 2.1e+02 4.4 0.3 2 23 576 596 575 596 0.93 8 17 2.5e-07 7.1e-05 24.8 1.2 2 23 602 623 601 623 0.97 9 17 6.9e-06 0.002 20.2 0.2 1 23 629 651 629 651 0.99 10 17 0.00038 0.11 14.7 3.2 2 23 663 685 662 685 0.95 11 17 0.0011 0.32 13.3 0.3 1 23 691 714 691 714 0.95 12 17 0.018 5.1 9.5 3.1 2 23 737 759 736 759 0.95 13 17 0.00013 0.038 16.2 0.7 2 23 766 788 765 788 0.97 14 17 5e-05 0.014 17.5 0.7 2 23 796 817 795 817 0.95 15 17 0.0038 1.1 11.6 2.3 1 23 823 846 823 846 0.95 16 17 0.05 14 8.1 3.8 2 23 853 874 852 874 0.96 17 17 0.0027 0.76 12.1 1.8 1 23 880 902 880 902 0.98
Sequence Information
- Coding Sequence
- ATGAAAAGTGAATACGTTGAAACTGAAGACAAAGTCTGTGAATTAAATGATACTGTGAGTAATGGGAATGAATCTTTTATAGAATTTGATAATCATGAAGAAAGTTATGATTTGTCTAATGAAAGTAATGAATTTACTTCTGCTGAAGATTTAAAGCAAACGGATTCAATTTATGATGAATTTACACCTGTTGATGATGTAAAGCAGCAAGAAGATAATTATGATGAATTCTCTTCTACTGAAGATACACAGCAACCAGAAGTAAATTACGAAAAGGCTTTAAATGCATTCATAAAATTCAGATCCAATAAAGACAAAGGTGATGACTCCCAgttaaaaattaaggaaaatcctgataaaaataaatctttcagCTCTGAATCATCAAAAACaccaaatattttgaaaagaaaaattgcaaCTGGAAATTTAATCAGTGAACAAAACAATAGCGGGTCTATTAAAAAGGATACTCAAAAGAGTTatgatttaaaagaaataaaaataccaaaactAAATCTGGAGGATGCTACTAACATAAGAACTGAAGAGGATGGTGTAATGTATGTGACTGCAAAAGGAAATAATCCCAATGAACTGctcttaataaaagtaaaaaaaatggataaaacAGCAGAGAAAAAGCAAGATAAAttaacagaaaagaaaaaagatggtGTTACTATTAGTGATATTGATGAACAGATagaagaatacaaaaaaaaaagagtccaaATTTTAGGAGCAAGTGCTGCTCACTCAGAAGAAGCGGAAATAGAAGAACCTGAAATAAGGTATGTTGATAAGGATGAATCAGCAGACATGGAAATGCTGAATTTGGATAATATTAAAGTTGAAGAAGTAGATCTgcaggaagaaaaagaagttttagttgaacaaaataatttaaaatttgaaaaagtgaaaCAAAAACAGTGGAAAGAATTCAAACATCAACATGATATTACTCATAAAGAATCTGCAGATGATTGCACAGAGAGACtgcaatcaattttaaaacaaaaagatgAGTACATTCAAGATTTCATTAGTTATTTAAAGCAAAGGAGAATAGTTGTCTCGCGTTTGAGAGACGAGGATATAATCACACTGTATGAAACTAAAAACAATGTAGTTCTAGAGAGGCCTTCAGTTCAAGAAATAAAAGCAGAAGAAGATTACGATTCGtttgaattgaaagaaaatttcgacTGCGACTTCTGTTACAGGACTTTTCCAAACAGAGAGATGGAATTTGAACACTcgaaaattcatgatttcaaaTTGACGCACTATTGTGGAGATTGCCAGCAGGAATTTTCTACCCATAAAGCTAAGCGAAAACACAACATTACCTGTGTACAAAAATTAATGTGTAAATACTGTGAAATGATTTTCGAATCCAAGGGTAAAAAGAGACAACATGAACAAAAACACTGTGACGATCAAGACGGTCAACTATGTGATTTATGCggtgaaaaattcaaacacacCGGTACCTTGGATCAGCACGTGAAAACAAAACACAtggatttagaaaaaatttatgagtgtTCCGAGTgtccaaaaaaatttgctttcaaAACTAAATTGACTTTTCATTTGAAGTCCGTTCACACAGCGGACCGACCTTTTTTATGCGAAGACTGTGGATCTGACTTTAAAAACCCCGCGAGTCTGAGACACCACAGGTTGAGAAAACACATGACCACGAATAACACGAAAGAGTGTAGTGTTTGTCAAAAAATTGTCCCAATCTACAGCATGTCAAAGCACATGAACACGCACAAGGCGTACACCATAAAATGTCCGCAGTGCGAAAAGATGTTCAAAAATTCATCGACCCTGAAGCAGCATTTGAGAATTCACGAAGACATGAGACAGTATAAATGTGACATGTGCGGAGTTGGATTCAACAGGCGAGATGGTTTGAGATTACACTTGAAAGTTCACGAGAAAACCGACAGCCGAGGTTTGAAGGAGTGCTCTTGCCAGATATGCGGCGAAAAGTTTCCAAATCACTCGACCCTCGTAATCCACCGTAATCGTACCCACAAAGACGGTAAGACTTACACGTGTCACATATGCAACAGATCAATGATATCACCTCGGTCGTTGGAGTGGCACCTGGCCAACATTCACAACGAACTGTCGACCGGCAACGACAAAGAAGAGCCTGGATCCATCGACGTCGAGACCAAGCGTGTGACTTGCTATCACTGTTCGAAAACCTTCAAGACCGAGATGATTCTGAGAACCCACATAAAAAACACTCACACGGAAAAGGAGCCAATGAAGTGTCCGGACTGTGATCAAATGTTTATGTCGGAGGTACGTCTGAAGCATCATATGATGGTCGAACACGAGCGGTATGAGGGAACCTTGGTGTGTCCTCACTGCCCAAAGAGATTCGTCAATCAGTTGAGGCTTAAAACTCACATGATCGCTCACTCGGACGAGAGGCCCCACACCTGCGAGGAATGCGGATTCATGTTGAAAACCAAAATTCAACTCGTAAAACACAAGCAAAACAGACACAGTAATGAAAGACCGCTCCAGTGCAAATATTGTGACTGGAGATGTAAACAAGTCAGTGCGTTGGTTTGCCACGAGAGAACTCACACAAACGAGAGACCCTACAGTTGCAGCGTTTGCGAGCAGAGGTTCAAATATTTGGGTGATAAGAACAAGCACGAGAGACGTCACGAAAGTCGAGGTGGCTCTGGGTTCAAAAGAATCGTTCCCGTCAGAAACAACACCAAGGTTAAAACTTCTCTTGATAACGAATCCGATAACCatgaagaagtttttgaaaacgagtTGGGAATGGAGCCAGATGAGGAGTACGCAGAAAAGGTTGAAGGCGACATGGAAAGCTTTGTAGAACCACTTAAACTAGAAGAAGTTAACATTACTGAATGTGATATAGATGATGGATCGCACTCGTCTTTCGAACCgGTGTATGGAGACGAAGAATCGGAAGATCCTCACGAAGCTGATGTCTTAGGAGCAGAAGAAACTGTTTACACCGAGGAGGTTACAGCAGATCACATAGAACCAGAAATTATTACAACTGATATGATTGATGAAAGTGTTTTGCAGGCGGGCGCAACAGTTGTTATTGAACAAACTGATGAAGATGGAAAAGTTCAAATGATACCTGTAGTGCTGTCTCTGCCGGACTTATCAGATGAGGCATCCGAAATAGATTTAGAGAATGCTTCTATAAtatatgaaagttaa
- Protein Sequence
- MKSEYVETEDKVCELNDTVSNGNESFIEFDNHEESYDLSNESNEFTSAEDLKQTDSIYDEFTPVDDVKQQEDNYDEFSSTEDTQQPEVNYEKALNAFIKFRSNKDKGDDSQLKIKENPDKNKSFSSESSKTPNILKRKIATGNLISEQNNSGSIKKDTQKSYDLKEIKIPKLNLEDATNIRTEEDGVMYVTAKGNNPNELLLIKVKKMDKTAEKKQDKLTEKKKDGVTISDIDEQIEEYKKKRVQILGASAAHSEEAEIEEPEIRYVDKDESADMEMLNLDNIKVEEVDLQEEKEVLVEQNNLKFEKVKQKQWKEFKHQHDITHKESADDCTERLQSILKQKDEYIQDFISYLKQRRIVVSRLRDEDIITLYETKNNVVLERPSVQEIKAEEDYDSFELKENFDCDFCYRTFPNREMEFEHSKIHDFKLTHYCGDCQQEFSTHKAKRKHNITCVQKLMCKYCEMIFESKGKKRQHEQKHCDDQDGQLCDLCGEKFKHTGTLDQHVKTKHMDLEKIYECSECPKKFAFKTKLTFHLKSVHTADRPFLCEDCGSDFKNPASLRHHRLRKHMTTNNTKECSVCQKIVPIYSMSKHMNTHKAYTIKCPQCEKMFKNSSTLKQHLRIHEDMRQYKCDMCGVGFNRRDGLRLHLKVHEKTDSRGLKECSCQICGEKFPNHSTLVIHRNRTHKDGKTYTCHICNRSMISPRSLEWHLANIHNELSTGNDKEEPGSIDVETKRVTCYHCSKTFKTEMILRTHIKNTHTEKEPMKCPDCDQMFMSEVRLKHHMMVEHERYEGTLVCPHCPKRFVNQLRLKTHMIAHSDERPHTCEECGFMLKTKIQLVKHKQNRHSNERPLQCKYCDWRCKQVSALVCHERTHTNERPYSCSVCEQRFKYLGDKNKHERRHESRGGSGFKRIVPVRNNTKVKTSLDNESDNHEEVFENELGMEPDEEYAEKVEGDMESFVEPLKLEEVNITECDIDDGSHSSFEPVYGDEESEDPHEADVLGAEETVYTEEVTADHIEPEIITTDMIDESVLQAGATVVIEQTDEDGKVQMIPVVLSLPDLSDEASEIDLENASIIYES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -