Efor005883.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Encarsia formosa
Gene Symbol
Prdm14
Assembly
GCA_030522645.1
Location
JAPYYY010001263.1:10945-15066[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 9.9e-07 0.00028 22.9 0.7 3 23 340 360 339 360 0.99
2 14 0.045 13 8.2 4.6 1 23 366 389 366 389 0.95
3 14 1.6 4.5e+02 3.4 3.3 1 23 395 417 395 417 0.77
4 14 0.0056 1.6 11.1 1.4 1 23 423 445 423 445 0.97
5 14 2.3e-06 0.00067 21.7 1.4 1 23 451 473 451 473 0.98
6 14 5.5e-06 0.0016 20.5 0.7 1 23 479 501 479 501 0.97
7 14 0.0049 1.4 11.2 8.2 1 23 507 530 507 530 0.96
8 14 0.022 6.4 9.2 5.2 1 23 609 631 609 631 0.98
9 14 1.8e-06 0.00052 22.1 2.0 2 23 638 660 637 660 0.95
10 14 2.3 6.5e+02 2.9 1.0 3 23 668 688 666 688 0.95
11 14 2.4e-05 0.0068 18.5 2.4 1 23 694 716 694 716 0.98
12 14 0.0024 0.68 12.2 5.0 1 23 722 744 722 744 0.97
13 14 3.6e-06 0.001 21.1 0.7 1 23 750 772 750 772 0.99
14 14 0.0008 0.23 13.7 1.1 1 23 779 802 779 802 0.96

Sequence Information

Coding Sequence
ATGGAGAGCAATGACTCCAAAGAATATACACTTTCTGACATTGAAAGTGTACCTAGTAACAACATAGTTATTCAAACTGTAACTAATTATAATGCAAAAGATAATGTAAAAACATCAAcgtattatttaaaacttgaaaatgaaAGAGACAGCAAAGAAAATGAGAATGTGGCATATGTTAGTATAGAGAATGAAACATTAGCTAGTGAAGCCATAGAAGATGATGCAAATGCTGAGTACGTAGCTTTGGAAGTCCAGGATTCGGGTCAAATTGTTTTACATGAAAAAGATGTCATTCTTTGGGGTGAGCTTTGTAGGATTTGTGCCAATGGATGTGATCAGTTAGTTCCCATATTTACTGGTGAGGGGTTGGAAAACAACttgagtcaaaaaattcatgcacACTTACCTGTGACTgtaTCTGAAAATGATGATCTTCCACATCAACTATGTTACAATTGTGCAGCAACATTAATCGCTTATGATGATATCCACAAAGGATGTGTTGATGCTCAGCAACGTTTAAATGATTTACATAGTAAATTAGTCTCCAAAGAGCAGcaagaaaatattaaagaaaccATCCAGCAAGACAATTTTTTGGAAGCAGAaagGGTAAAAAGTACCATAGCATCAGAAAATTTACCTGAAACCAATGacgtaaatcaaaattttcatcccATTGTAAAAACTCTTTTGAAAATAGCAACTAAGTCCAAGCCTTCAAAATATTCTCCAACCCCATCAAGTTCAGAAATCTATGATTCTGACAATCAAACTTCAACCGATGACACAgtggaaaaaccaaaaaaacctaCCAGATGTGAGAAAAAAACTTGTTGGAACATAGCAATGAAGTGCAATCCTTCAAAAGAAAATCCATTGCCATCAAGTTCAAAAAGCAATGATTCTATCGATGATCCTTTAACTGATGACACCgtggaaaaaccaaaaaaatccaCCAGACGCAAGAAAAAAGTCAATTCCAATACAGAAGAAGAGAAGGAACCCAAACTGTGTCCCAACTGCGGTAAATTTTTTCGCACCAGTACGACTTTGTTGGATCACATGCGAATTCACAACGACGAGCTTTCCTACATATGCGACTCGTGCGGCAAGCGTTTCCGTTGCTACCAGGGACTCCACAGACACCAGAAGGAGGTTCACAACCAGGTGCGAAACTTTTCCTGCAACATTTGCAAAAAGAACTTCGGATGTAGAGTCAAAAGAGATGATCATGTCCGCACTCACACCGGTGAGCGCCCGTATGCGTGTCGAAAATGCAATTCTAGTTTCAAGAGCAGGCCCGCGCTTTACATGCACGAGAAGCGTCATCAGAACGTATTTCCCTATCAGTGCGTCGAATGCGACAAGATGTTCCGCAGGAAGCAGGAGTTGATTCATCATGTCTCCATCCACACCGGGGAGAAGAAATTCAAGTGCAAAGTCTGCCAGAAAAATTTCCGGGTAAAGGCCGAGCTCAACAGACACGCTCTTGTCCACTCGATTGCAAAACCCCACCATTGCCCCAAGTGCCACCTGTCCTTCAAGCAAGGTCGATACCTCAACAAGCATTTGAAGAAAATGCATAACTCGACCAGAATGGGTAATCGAGATTTGATTAGAATATTTCGAAGCCACGTATTGAGAAAGCAATATCTTAAGCTGGAAGATGGCGGGGTGATCACCGTGGACGTCCAACCGGTTGTCAAGCTCGAGGAAGCACCAAAACCATCTTCTCCCTGCAAGCTGGACCCGAGCGAAAAGGAAGCCAGGCGCAAGGAGCTAGCCCGGGTCAGAATCAACTCGGACGGCACTACGGCGTACAAGTGTCAGGAGTGCTCCAAGGTTCTTTCGACCTCGTACAACTATTTTTGTCACAAGAGGATTCACACGCAGGAGAAGCCCTGCACCTGTAAGCTTTGCGGCAAAAGCTTCACCGCGTCTTCGTCGCTGAGTAGGCACATTCGCGAGGTCCACGACAAGATTAAGGAGTACGGCTGCCGGTATTGCCCGAGAAAACTGGCCTCGAAGATCGCAAGAAACGAGCACGAGCACACCCACACCAACGAGCGGCCCTACGTTTGCGATTTTTGCCAAAAGTCCTTTCGTCAGCGTGCCAGTCTGTCACTTCACAAGAGGTATCATACCAAGAATTTTTGGTTTCACTGCCAACACTGCGACCGGGGCTTCTTCAGAAAGCAGGATGTTGAGAGACACGAGCTCACCCACTCCGATCAAAAACCTTACGAATGTAAGATATGCAATAAAGCTTTCAGAAGTTCGGCCTCGGCTATCAAGCATCGACAGACACACGAAGGCGACGTGCAAAGACACATTTGCGAAGTCTGCGGGGTCTTATTCACACAGGAGAGATACCTCAAAAATCATTGGAAAAAAATGCACAAAGACAGATAG
Protein Sequence
MESNDSKEYTLSDIESVPSNNIVIQTVTNYNAKDNVKTSTYYLKLENERDSKENENVAYVSIENETLASEAIEDDANAEYVALEVQDSGQIVLHEKDVILWGELCRICANGCDQLVPIFTGEGLENNLSQKIHAHLPVTVSENDDLPHQLCYNCAATLIAYDDIHKGCVDAQQRLNDLHSKLVSKEQQENIKETIQQDNFLEAERVKSTIASENLPETNDVNQNFHPIVKTLLKIATKSKPSKYSPTPSSSEIYDSDNQTSTDDTVEKPKKPTRCEKKTCWNIAMKCNPSKENPLPSSSKSNDSIDDPLTDDTVEKPKKSTRRKKKVNSNTEEEKEPKLCPNCGKFFRTSTTLLDHMRIHNDELSYICDSCGKRFRCYQGLHRHQKEVHNQVRNFSCNICKKNFGCRVKRDDHVRTHTGERPYACRKCNSSFKSRPALYMHEKRHQNVFPYQCVECDKMFRRKQELIHHVSIHTGEKKFKCKVCQKNFRVKAELNRHALVHSIAKPHHCPKCHLSFKQGRYLNKHLKKMHNSTRMGNRDLIRIFRSHVLRKQYLKLEDGGVITVDVQPVVKLEEAPKPSSPCKLDPSEKEARRKELARVRINSDGTTAYKCQECSKVLSTSYNYFCHKRIHTQEKPCTCKLCGKSFTASSSLSRHIREVHDKIKEYGCRYCPRKLASKIARNEHEHTHTNERPYVCDFCQKSFRQRASLSLHKRYHTKNFWFHCQHCDRGFFRKQDVERHELTHSDQKPYECKICNKAFRSSASAIKHRQTHEGDVQRHICEVCGVLFTQERYLKNHWKKMHKDR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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