Efor007006.1
Basic Information
- Insect
- Encarsia formosa
- Gene Symbol
- Rps5
- Assembly
- GCA_030522645.1
- Location
- JAPYYY010001614.1:8798-15164[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0042 1.2 11.5 0.4 3 21 43 62 41 63 0.86 2 14 8.8 2.5e+03 1.0 0.0 2 20 69 87 68 88 0.92 3 14 0.34 97 5.5 0.4 1 12 274 285 274 294 0.86 4 14 0.093 27 7.2 0.7 1 20 416 435 416 437 0.94 5 14 3.5e-05 0.01 18.0 0.5 2 23 442 463 441 463 0.98 6 14 0.00022 0.064 15.5 2.7 1 23 474 496 474 496 0.95 7 14 0.1 29 7.1 0.1 1 23 515 536 515 536 0.90 8 14 0.0017 0.47 12.7 0.1 2 23 542 563 541 563 0.95 9 14 6.5e-05 0.019 17.2 4.8 1 23 620 642 620 642 0.99 10 14 7.8e-06 0.0022 20.1 5.0 1 23 648 670 648 670 0.98 11 14 0.00017 0.049 15.8 4.6 1 23 676 698 676 698 0.98 12 14 2e-06 0.00056 22.0 0.8 1 23 704 726 704 726 0.98 13 14 0.00012 0.035 16.3 0.2 1 23 730 752 730 752 0.99 14 14 0.00013 0.037 16.2 0.2 1 23 760 782 760 782 0.97
Sequence Information
- Coding Sequence
- ATGACATCTTATGTTCAAAACTTTTCATTGGATACCGACGATGACACCTCCAAAGTCTGTGATATCAGtaatttagaaaatttagaaCAATCCTTACAACAAGATGTGAGTCTGATAAATCTTACATGTCCTATGTGCTGCGGAGAGACTTTTACAGATCCTGAAGCTTTGAAACACCATTTACTTAACATGACTGACAATTTGTATTGCCCGAGCTGTTCATTAAGAACATATTCAATTGCTGCTTTGATTCAACACTTGGACTGCtgtgggaaaaaaatttttgatcaagaAGAGTTACAGCAAAcagaatttcaagaaaaaaattctgatcaATTACAGATACATAATTGTGCCAGTGATCAAAAGAGCCGAGAAGATATATTAATGgatGAAAATGAAGTTACTATGAATGAGGGTTTTTTAGCAACTGTTAATGAAGAGGGTATCATGATGGTTGGTGAAGGCAGAACAATTCAAGTTGATGAAAATGgtGATATTCAAGTTGTAGAAAAAATGAACTCAGCAACACAAGAAATCATGCAATTCGAAAATTGTGATCAAGATAATGATCAAGTAAAAGAGGAccaaatttttacttcaacaaaTAATTTAGAAGATACTGACTCATTTACTTGCAATCAACAGAATAgatcttttttaagttttccgGACACCCAAGAAATGCTTGATGACAATGAAGCAGCAGCATTGATAAACATATCACAAGTCAATAATTTACAGTTCAATGTTGatgtattaaaagtaaaaaaagaagaattcaAAGTAGTAAATGAAGAAGAgGAATCTGATATTGAATACAATTGCAGTACTTGTGGCATGAGTTTTAATTCGGTAATGGATCATATTAAACAGTATCATGATGGACAAGAAGTTGTGCTTGAAATGGCTGAACAGCAGCTTAATGAATTAAGATCTGCTGAATCATTATCTCAAACTACTCTTATAGAAACATTGCCTGCTGAGACAGCGAATGAAAACATTATTCAGACTACATCAAATACTATGAAACAAAGACAATCAATGAACACTCTAAGAACTGAAGAATGTGTTGACAATGATGGAAAGTTATATACTAGGAAAGTTGTTCAAATTGAAAGATTTTGGGACCGCACTCCAGTCACTCTTTCTGCAACAAAAGCTcctatgattgaaaaatttttttcaaatgttgaAGGTGTCAAGGTCAGAGATAAAAGTGTCACTGTAGCACCAACTCGAATGTACAGATGCAATCAATGTTTAGAGCAATTTGCTAAGCTGGGCGACTTTCGTGTTCACGTGTGCCTTCAAGGAAACAATCAATGTGAACAGTGTGATCTCAAATTTGCAACCACAAAAGCATTGCAATTACACATGCGTGTCCATGGAAACAGTGGCTTTGCTaatcagaaattatttttatgcactGTTTGTGGTACAGAATTTTCAACCCACAAAAGTTTAAGATTACATTCTCGAATGCATGCACCAGTCAGAGCCCGACACGTTGACGCGCCTGAAGGAACTGAAGAAGAAACTTTTGTTTGTAATGAATGTGgTACAACTTTATCAGAATCTTATAGATCAGCACACATGGCATTGCATGCTGGAGAAACAATTACATGCACGGTTTGCAATCGTAAATTCGATTCTGAAGACAGCCTTTTGATGCATGCAGCAGTTCATACTGAACTGAATGGATTTAATACGTTGAATGAACCAATTTTAATGTTGGCGCAAGCTACACAAGATAACATTCAGGACCCATCATTAACTAGCAGTAGTAACAAAACTGTATTGGTTTCAACTGGTGCAACAAATGCAGAATCTATTGATGGGCAAAATCAAAAACCATATCAGTGTCAACATTGTGGACGCAGATTTACTAGACCCCATGAAAAAGTGAAACATGAAAGAATTCATACTGGTGAAAAACCACACTCTTGTGAggtatGTGGTAAAAAATTTCGAGTATCTTATTGTTTGACTCTACACATGCGCACTCACACGGGAGTTCGTCCATATGAATGCCAGCACTGTGGTAAACGTTTTAAAGCTTCTTCGGTATACAATCATCATCTGTTGACTCATGGAGATGAGCGCGCGTACACTTGTCCTTATTGCCCGAAAACTTTCAAAACTCGTGTTCAGTTGGCTGGACATAAGAACAGCCACACAAAGCCGTTTCGGTGCACCGAGTGCTCGAGACCTTTTGCCTCATTGTACGCTGCTCGCGCTCATATACAAACTCATAAAAAGGATAATAATCTTAAGTTCAGTTGTAATATTTGCGGTGCCTCATACGGACGAGCTTTTGCTCTTAAAGATCATCTCAAGCAGCATGAAAATCATTTATCAGCACCGTCAGAGGGATTAAGAGACGGAGAAATTCCTGATGATATTTCAAGTTTCATTCTAGCTGAAAATGATGACATTGATGAGGAGGACCTTATTGTGCCTTCGTCAAATGATTGTGATTCAATCCAGACTGAACTTAATGATATGAAATGTGATATTCTTCAacTAATCATGGCTGACGAATGGCAGGTTGAACCAGTGGCTGACTCTGGGGCACCAGTGTCTTCATACCCTGAACTACCAGAGATTAAATTATTTGGAAGATGGAACTGCGATGATGTCCACATCAACGACATGTCCCTGCAGGATTACATTGCAGTAAAAGAAAAGCATGCAAAGTTTATTCCTCATTCTGCTGGACGTTATGCAGCCAAACGGTTCCGTAAAGCACAGTGCCCTATAGTAGAACGCCTTACAAACTCCCTTATGATGCATGGTagaaataatggaaaaaaattgatggctGTGCGCATTGTCAAACATGCATTCGAAATCATCTATCTTCTAACTGGAGAAAATCCATTACAGgtCTTGGTAACAGCTATTATCAACTCCGGACCTCGTGAAGATTCGACGAGAATCGGAAGAGCCGGTACTGTAAGACGACAGGCTGTCGACGTATCACCTCTTCGTCGTGTAAACCAGGCTATCTGGTTGCTTTGCACTGGAGCACGCGAAGCTTCTTTCCGTAACATCAAGACAATCGCCGAATGTTTAGCCGATGAGCTTATTAACGCTGCTAAAGGTTCATCCAACTCATTTGCAATCAAAAAGAAGGATGAACTCGAAAGAGTTGCCAAATCCAACCGTTAA
- Protein Sequence
- MTSYVQNFSLDTDDDTSKVCDISNLENLEQSLQQDVSLINLTCPMCCGETFTDPEALKHHLLNMTDNLYCPSCSLRTYSIAALIQHLDCCGKKIFDQEELQQTEFQEKNSDQLQIHNCASDQKSREDILMDENEVTMNEGFLATVNEEGIMMVGEGRTIQVDENGDIQVVEKMNSATQEIMQFENCDQDNDQVKEDQIFTSTNNLEDTDSFTCNQQNRSFLSFPDTQEMLDDNEAAALINISQVNNLQFNVDVLKVKKEEFKVVNEEEESDIEYNCSTCGMSFNSVMDHIKQYHDGQEVVLEMAEQQLNELRSAESLSQTTLIETLPAETANENIIQTTSNTMKQRQSMNTLRTEECVDNDGKLYTRKVVQIERFWDRTPVTLSATKAPMIEKFFSNVEGVKVRDKSVTVAPTRMYRCNQCLEQFAKLGDFRVHVCLQGNNQCEQCDLKFATTKALQLHMRVHGNSGFANQKLFLCTVCGTEFSTHKSLRLHSRMHAPVRARHVDAPEGTEEETFVCNECGTTLSESYRSAHMALHAGETITCTVCNRKFDSEDSLLMHAAVHTELNGFNTLNEPILMLAQATQDNIQDPSLTSSSNKTVLVSTGATNAESIDGQNQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCNICGASYGRAFALKDHLKQHENHLSAPSEGLRDGEIPDDISSFILAENDDIDEEDLIVPSSNDCDSIQTELNDMKCDILQLIMADEWQVEPVADSGAPVSSYPELPEIKLFGRWNCDDVHINDMSLQDYIAVKEKHAKFIPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIYLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREASFRNIKTIAECLADELINAAKGSSNSFAIKKKDELERVAKSNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -