Efor002176.1
Basic Information
- Insect
- Encarsia formosa
- Gene Symbol
- -
- Assembly
- GCA_030522645.1
- Location
- JAPYYY010000343.1:15337-19725[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00039 0.11 14.7 1.1 1 23 304 326 304 326 0.94 2 13 1.9e-05 0.0053 18.9 1.3 1 23 331 355 331 355 0.94 3 13 0.00061 0.18 14.1 4.2 2 23 442 464 441 464 0.96 4 13 3.6e-06 0.001 21.1 0.2 1 23 470 493 470 493 0.95 5 13 6.1e-05 0.018 17.2 0.8 1 23 503 526 503 526 0.94 6 13 2.3e-07 6.7e-05 24.9 3.6 1 23 532 554 532 554 0.98 7 13 6.3e-06 0.0018 20.4 0.5 1 23 560 582 560 582 0.98 8 13 4.4e-05 0.013 17.7 5.2 1 23 588 610 588 610 0.98 9 13 1.1e-08 3.3e-06 29.0 0.7 1 23 616 638 616 638 0.99 10 13 8e-05 0.023 16.9 1.2 3 23 646 666 644 666 0.97 11 13 3.6 1e+03 2.2 5.7 2 23 673 694 672 694 0.95 12 13 3e-06 0.00086 21.4 3.1 1 23 700 722 700 722 0.99 13 13 9.8e-07 0.00028 22.9 2.7 1 23 728 750 728 750 0.98
Sequence Information
- Coding Sequence
- ATGGCGGAAATTTGTCTTTATGACTCAAAAATCTGTCGTTTATGCGCAGAAAATAACGACAATGGGGAATTATTATTTACCGATGAATCAGAGGAAACTGAGCTGAGCACTATGATCAATCGTTATTTGCCTCTTAAGgTCAACAATGATGGTAAACTGCCTTGTACAATTTGTCCTGGTTGCAATATTCAATTACAAGCAACTGCACAATTTTTTGATCTTCTGATTCATGGTCAGcaaaaaataagagaaatttGGAAGCAACAAATTGAAGCAGAGCATAGGATTGAGCTAGaagttttgaaacaaaaaaaattgacttcagCTCTAAATAACTCTGAAAAAGATTTGAAAGAAGGAACTGGAGTTACAAGTTTAAAAGAACATCCAATTTTTATGAAtgtaaTGCATAATGGTTCGATGTATGCTGCTGATCATGAATTATCTTTGCAAATGGATGGTTTGGATAAACCTAAAAGAAAAAGAGGTCGTCCACCAAAAATTCTAGAAGAAGAAGTTaaagacaTTGAAAAAGTTGAATGTTTGGAAAGTGTCAGTCAAGAGGATGAAGAcaagcaagaagaagaagaattagaTGGTGatggaagaagaaggagaaaacGTAAAGTTCccaaaagATATATGGAAACAGTTCAAGGAAAAgaactagaaaaaatatttaaacaggAAGGTGTTTACGATGAAGATGAAATACAAATTAAGTATgagttcaatgaaaatcaaGACACTTTAAACCTGGGAAATAATGGAAATAACAGTGAAACAGaaataattggtcatttagaaaattttgatggaaaaaatttgGGTGAACTAGTGGTTGTTAATAAAGGTAAAGTTCGACCTAaatcaaaattgcaaaaatcaaaactaaaaagaaaaaataaatttatgtgtCCTTTTTGTGGCAAAGGTTTTATTCAGCGCAGTAAATATGTTGTTCataaaagttttcataaaacCATCAAATATGAGTGTATGAATtgtgaaaaacaattttcttctaaagaaaatttattaactcaCCAAAAAACAGATTCTCATTCTggggaaaaaattgttgaaataaatgataaagaaaatattttgaaagattctCCTGATGAATCTGAAAACACAGAATTACTAGCTACCCATGAATTTTCTGAATCTGATCCTATAGGTACTGACACATGCAATGAGCCTGAATTCATTACTGATGAAGAAAATGATTCAAATAATGTTACAAACGAAAAAGTTGATATCTTTACTTCAACAAATGAATTACAAGATTTAACTTCCAAAGAATTTGGCGATTCACTTCAGTGTGATCGATGTCATAAACATTTTCaatccaaaaataatttagaaactCATGTCAAAGTAGTTCATCTTGGAGAAAAACCCTTCATTTGTGAAATATGTAATAAAGCATTTTCTTATCAGTCCAGCTTAAAAGGGCATCAAGAAATTGTGCACcagaataattacgAAACGGAAAAAGGGTTTTCATGCGATATTTGTGGAAAAGTATTTTCTCATGCAAGTACAATTATGTACCATAAGGTAACAGAACATAATAAAGGTCGTCGTTTCGTCTGTAATAAATGTGGAAAAAGTTTCAAGCACAAGCAGCTGTTACAGCGTCATCAACTTGTTCATTCAGAGGACAGACCTTATCCTTGTGAATCTTGCAATGCTTCATTCAAAACTAAGGCAAACTTATTAAACCATCAATCTACTCACACAGGAGAAAAAAAACACACTTGTGAGCTCTGTGATCAAAAATTTGCCCACAAAACTAGTCTTACTCTACATCAAAGGACACACACTGGAGTGAAGCCATATAAATGTGAAGTTTgctcaaaaagtttttctcaaaatgGCAATTTACAAGAACACATGAGGATTCATACGGGTGAAAAACCTTATGGCTGTGATGTTTGTGAACGTAAATTTACTACTTCTTCTCAATACAAATTGCATGTTAAACGACACACAGGTGAACGACCTTGGCAATGTGAATTTTGCTCAAAGTCGTTCTTACACAAAGATACATGGAAGTGTCACGTTAGAAGACATACGGGAGAGCGTCCGTTTCAGTGTCCACATTGCACTCGTAATTTTACAGAACAATGGGCGCTAAAAAAGCATCTGAGAAGGCACACAGGAGAAAAACCTTACACTTGTGAGATTTGCAAAAAAGCTTTTGCTGACTGCTCAAacttaacaaaacataaaaaaattcacaaacatAATTCGGCAGTGGAAACAAATGAATTATCGGATGGTACTCCAATTGGAAGTGTATGGCAAATTTTACCCACTTCACAAGAAGAAAAcgaaaatttaacaaataatgTAAGTCAAGTAATGGCAACAAATGAAACCGATGTTACTGGAGACGGTATGTCGCAGATTATTTATGTAACTTACGACGATACAGGAAATTCCAATGATTCGAATTTACATTACAaaaatgtATCTGATGACCAAGAGGCAAATATAAATACCAATGAAAATAATGTAACCCCAGTTGGATTATCTGTAGATCCCAATTTACAATTCCAGATTATGGATGATCATGGAAACGCAATTCCATTATCAATTCAAGAGGCTAGACAATTACTCTCTGAAGGACAAATTATTAGTCAACTAAATGGAGGGCAAACAATTAGAGTCCAAGGTTTACCAGCATCTTTGAATTTACAGCCAGATATTGAATCTGACACTGAACCAGACATTGGACCAgatattaaatattcaattccTCTTAAAGGAAATTCAatgtctaaaattttagctttatcatCAGTTCAATCAAATACTGTAAATGCTATCAAAGATTTcaaacgTAAAGAATCTGGTAATAGCATTTCTGCAGGAGATCAAACATCAACTGAAAATCAAATAGAATTAAATGAGGAACAACCTACATTAGAATTTATCACTCAAGATGGGCAAAATGTAGTACGACTAGTAACAACCTCTCTCAACTTAGATCCTGCACAATTGGCTTCAGGGTACCTGACTATTACTTAA
- Protein Sequence
- MAEICLYDSKICRLCAENNDNGELLFTDESEETELSTMINRYLPLKVNNDGKLPCTICPGCNIQLQATAQFFDLLIHGQQKIREIWKQQIEAEHRIELEVLKQKKLTSALNNSEKDLKEGTGVTSLKEHPIFMNVMHNGSMYAADHELSLQMDGLDKPKRKRGRPPKILEEEVKDIEKVECLESVSQEDEDKQEEEELDGDGRRRRKRKVPKRYMETVQGKELEKIFKQEGVYDEDEIQIKYEFNENQDTLNLGNNGNNSETEIIGHLENFDGKNLGELVVVNKGKVRPKSKLQKSKLKRKNKFMCPFCGKGFIQRSKYVVHKSFHKTIKYECMNCEKQFSSKENLLTHQKTDSHSGEKIVEINDKENILKDSPDESENTELLATHEFSESDPIGTDTCNEPEFITDEENDSNNVTNEKVDIFTSTNELQDLTSKEFGDSLQCDRCHKHFQSKNNLETHVKVVHLGEKPFICEICNKAFSYQSSLKGHQEIVHQNNYETEKGFSCDICGKVFSHASTIMYHKVTEHNKGRRFVCNKCGKSFKHKQLLQRHQLVHSEDRPYPCESCNASFKTKANLLNHQSTHTGEKKHTCELCDQKFAHKTSLTLHQRTHTGVKPYKCEVCSKSFSQNGNLQEHMRIHTGEKPYGCDVCERKFTTSSQYKLHVKRHTGERPWQCEFCSKSFLHKDTWKCHVRRHTGERPFQCPHCTRNFTEQWALKKHLRRHTGEKPYTCEICKKAFADCSNLTKHKKIHKHNSAVETNELSDGTPIGSVWQILPTSQEENENLTNNVSQVMATNETDVTGDGMSQIIYVTYDDTGNSNDSNLHYKNVSDDQEANINTNENNVTPVGLSVDPNLQFQIMDDHGNAIPLSIQEARQLLSEGQIISQLNGGQTIRVQGLPASLNLQPDIESDTEPDIGPDIKYSIPLKGNSMSKILALSSVQSNTVNAIKDFKRKESGNSISAGDQTSTENQIELNEEQPTLEFITQDGQNVVRLVTTSLNLDPAQLASGYLTIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -