Efor011147.1
Basic Information
- Insect
- Encarsia formosa
- Gene Symbol
- -
- Assembly
- GCA_030522645.1
- Location
- JAPYYY010003185.1:13245-14261[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-11 5.1e-08 34.3 0.0 1 39 17 55 17 61 0.81 2 2 6.9e-13 1.8e-09 38.9 0.0 1 44 176 219 176 220 0.93
Sequence Information
- Coding Sequence
- ATGTCAATGTCAACAAATAAtaaaccacaaaaaacttatcgatcCTGGACTCAAGAAAACTTAAATCTAGCAATCGACGCTGTTATCAGAGGATTATATACAAGTAGAGCTGCTAGTCAGCAATATGGCATACCTCGTACGACTTTGGAGCGGCGTTTGAAGTTACTTGGTCAAGTCAAGAAAAAACAGGGTAGAGCTCCATTGTTGaggaattatgaaaaaaatattgaagagtCCATACTCAAGTTACAGAAAGATGGCATCAAGTGGACCATGGCTGATCTCAGAAGGTTGGCCTTTGAATTTGCTGAAAAACATCAAATTAAGCACTGTTTcaatagagagaaaaaattggCCAGTTTTAACTGGGTAAATTCATTCCTCCACAGGCATCCAAATTTGTgtatcaacaataaaaaagttaaaaaacttcttCCAGACTTGATTGATataaaaacgtcaaaaaaagTAGAACCAGTGTGTTTGATTAATCAAGTGCAAAGCGTTAACAACAGGTGCAGCTGGACTGAAGATCAGCTGATTCAAGCAATTGAGTCTGTGAACAATGGTACCAGTAGTTGCAGATCAGCAAGTAAAAAGTTTGGCATTCCTAGAACAACTTTGATACGGCATATTAAAGAaggtacaaataaaaaaaagagattggGACGCGTCCCAATGCTGGGTGAGCTTGAAAATGAgttgaaagaatttttactCATTGAACAAAATCATGGGAACATTTGGTCTATGACCGAACTGAGAAAAGTAGCATATGATTTTGCAGAAACTCACAATATCAAGCACAAGTTTAATGAAGAAAAAGGCTTGGCGAGCTACGAATGGGTTCATGCATTTACCAGCAGACATCCTGAAATTATTGTACAAACTCATAAGCGTTCCGTTTCtgatttgatttattataattatgagtTCTGCGACTTAATGCAGATTGTTTTAGAAGAGGGAGATGAcaatcttgatatttttaaccagaataatgatgaaaatttgtga
- Protein Sequence
- MSMSTNNKPQKTYRSWTQENLNLAIDAVIRGLYTSRAASQQYGIPRTTLERRLKLLGQVKKKQGRAPLLRNYEKNIEESILKLQKDGIKWTMADLRRLAFEFAEKHQIKHCFNREKKLASFNWVNSFLHRHPNLCINNKKVKKLLPDLIDIKTSKKVEPVCLINQVQSVNNRCSWTEDQLIQAIESVNNGTSSCRSASKKFGIPRTTLIRHIKEGTNKKKRLGRVPMLGELENELKEFLLIEQNHGNIWSMTELRKVAYDFAETHNIKHKFNEEKGLASYEWVHAFTSRHPEIIVQTHKRSVSDLIYYNYEFCDLMQIVLEEGDDNLDIFNQNNDENL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -