Basic Information

Gene Symbol
JARID2
Assembly
GCA_030522645.1
Location
JAPYYY010001112.1:17775-28065[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1e-22 8.2e-19 69.5 0.0 6 89 1254 1335 1250 1335 0.94

Sequence Information

Coding Sequence
ATGGTTCTAAGCCGGAATGACAAGCGTAAAAGGAAAGAAGGAGATATTGTGGATCTCATGGATCCACTTGCAGAGACTCCAAAAAGAACCAAAATTCATGCTCAAAGAAAGTTTGCTCAAGGAGTTGCTACTCCAGTGTTTAGTCCTATTAGCACACcagtaaaagaaaaagaaaaagtaaaaccaGCAGTATTTACTGAATTAATAACTCATAAACGACCAAACACAGaagattttttaacatttctttGCTTCAGAGgAACATCTGTATTGCCTccaagtttaaacttttttggtaTTGGTTCAGAAgctgaaaaattacaaattaaaagtcCTCAATCAACTTCAGCTGCCAAAGGAGTTTCTAAAACAAATAGTATTTGTGGGAAGCATACCTCTTCCATTAAAACAGAATGTAATGCTAAACTAGTGTCAAAAAAAATCGTCAACAAGCCTAAAAAGCTTGAGATTAGAAGAATAACTACAAGATCAAGGAATGATGTTGCAACTCCAACTCCAGCTTCCAACGAAAGTCCATCAAGGCGACCTTCTAGAAAAACTAAAGAAGCAGCAGCTATCTATATGGAAATACTTGGAAGAAAATTGGTGAGCCCAGAGCTAGATAATGATGATAACATGTCTCTGGATAGTTTTCCTGAACTACCCAATGCTAGAAAAATCGCCCaaactgaaaaagaaattaaagccaaggtaaaatcttcaaaagtcgAAATAAAAGCTAGTATTTCTATGCCTGTAAGTAAAGAAAAGGATAAGGAAAAAGAAAAGGACAAAATTAAAGAGAAACccaaggaaaaaataaaagagaaagaaaaaaagattagcaaacaaaaaccaaaagaaAAGGAAACAAGTGCAAGtaaactttcaaaaaagaaaattgcaaaagaaaaactcatCATCCCTGCAAATAAAAAACGTACAGTAAAAGTTCAAAAGTATAAAGAGATCAACAGCGACGATGATTCGATGACATCCGAagatttattacaattaaatgaagCAATAAAAGCTTCCACGGCTTCTAGAAGATCGGCTCCAGCAGTGCTCATTAAAGATAAGAAACAAGAAAATCGTGATTTAAGTACCCTATCAAAAAATCAGACCGTAAAACCAGTCAAAAATTCCGAACCTCAGAATTCTCCTAAAGCTATTAAAGAAAATCACaacaaagaaacaaataaagaaaaagcaATAACAGTTTCTAAGCGTAAGAGGGAGGAAAAAGAGAAAGTATTGCCGAAGCAAAAATCTGAATTAtcgaagaataaaaataaacagtttcAAGCTGAGGAAGAATCGGAAGAAGATAATTTCGAAGGAACAATTgcgatgaagaagaaaaagataagCAAAAAAGAAGATACTAAATTAAAAGATTCCACAAAGAAagtcattgaattaaaaaataacattgacACAATGGAAACATGTAGCAGTGGTACAGGTAAATCGCCTTCAGGAGAAATTTTGAAGAGTCCAAAACGGAATGAAACAACAGATCCAAATTTATTATCTGTGCCTTTAATAAAATCAGTTACTGTACCGGCAGCAGCAATGACAACGATTAAAGTTTCTGATGACGAAGAATCTTTCCGtggatttactaaaaaatcgGTGGATGTGTATCAATCCAACTCTAAAACTAGTAATATATTAGACACGATCGATGGCAAAAATGATATTACAAAAACGCAAAATACATTGATAAATACAACAATTGGTTTGAATGATATAAAAACGACTAATACATTTCCGAGTATTAAGCTTATGCAAGAACAGCaagtagatgaaaaaaaaatcacaactgATGCCTCCATAAAATTAGAGCCGGATTTTAAGaaaacttgttcgaaaaatttaaacgtaATCGACATGCCAAAAAGTCTACTACATTCGCGCAAAGAACGCGTGAACATGTCTACCGAGCAAATAGAAAAATGGCTAAATGAGAGCTCGCTTGCTAAAGAAGAATCAAAAGCTGAAATGGAAAAACTCTCAAACCACAGGCTCGAAAAAAACAAGCACAGTGATACCCCTCCCCCGATTCATAATCATCTTTTAATATCCCCTAAAATTCAACATCTCGTCAGACCAGTAAATGTTACTTTGTCTAAGCTTTCGGacagattaaaaaaagcttctaTGAGCCCGATCAGCGCCAGCAGAACATCTGTGCTTTTGACGAACAGTTTTGTATCCACGGTAAAACCGCAGGTACCACTGGTTTTGAAATCAAAACTTGTACAAGACAACATTAAAGAAGataaaaaggaagaaaagaaagagcTACCTCCAAGTACATCGCCAAGCAGAAAGCTTAGTAAAGATTCATCTTTTAATGACGCTGACAGTGATGTGGTTTCGAAATCGGATGCTAACTCTGTAAGTGACTCGTTGGACAAAAAATCGACAAGTAgtcctgaaaaaaaagttttttttcatcaaagaaaGTCCTTTTTACCAAAAGTAAAGGAGCGGAAACCAGTGACCAGTGCTTCGGCTTTTTCACCCGAGAATGAAAGCAGCGTTTATGCATTCGAAACCGAAACAGAAGCACCAGTCAATACGCCCTTTCGTAGGAAAGCTAAAGATATCGGCGTCAAGGATCAtcctgGCAAAGAGAGAAACAGTTTACAGTCAACTAAAAGTGAAGAGGAAAAAACGTCCAAGCATTTAAACTCCTCGGAGGAAGCTCGAAAAGACGAAGGAAAATTATCTCCGCAGTTGGAAACAAAAACTCCAAAGAACTTCGAGCTTCCGAAAAATTTCACAGATTTGACAAATGTACAGGTGTTACCACTAGACAAACTAACAACAAGTTGGAGCAATGTAAATTGCAGTGCATCGATAGCGGTTCAGGTAAATTTCGAGGAGCAGAAACAACAGCGGCAGAAAACAAATGTGGAGAGCGACAATGGTACAAATTCAGCCCAAAAAAGTACCGAAATATCAACTCAGACTGACACCGGCGCAGCCAATGACGACGATGATGACAGTGGACAGTTATTTTATATACCCCTTCAAGCCGTGACGCGAAATGGTTCAGCTCAGGGTGGGCAGCAGCTAATTCAAGGAGTAGCTGTAAAACTAGGTACTGAGGGACCTACGGGACCTAATCAAAGGGTTCTACTAAAAGCAAAACTTGTGACAAAGCCACCCGTTTCGGTAGCCAGGTGTCCACCTATTGGAACTGTGCAACCGACTGCCAGAGCACCACAAAATATCTTGGCGGAGCCATTAGATTTACCATCGACATCTCATTCAGGGATGAGCGATGATGAAATTAAGATTTTGGATGACAAAGAAAGCAATCCAATCGGGAATATAGATAAAGTAAAcCATACAGAAGTGAATTAtgataaagttattaaaaatcaaaagatcaaagacagaaaaatttcaacagaagcaataaaattgactaaaaaagcTCCGACAAAATCCAAACATCGCATCTACTCACCAATAAATAATACTAAATTTCCTAGAATAAAGTACAATGAGCAGGCTCGTCTTGTAGAAGCTCCGACTTTTCACCCGTCGGAGAAAGATTTTCAGGATCCACTTGAATACATAGATAAAATTAGACCAATTGCCGAAAAATTTGGTATTTGTAAAGTAGTTCCTCCGTCTAATTtcaagCCGGAGTGCAAAGTGTCCGATGATATGCGATTTACGGCTTACAATCAGTATATTCACCGAATGCTTCATCGTTGGGGCCCAAACGTCAAAGAAATGATggccataaaaaaatatttggctacTCAAAGTATTTCACTGACTCAGCCACCGTGGATTGGCGGAATGGAAGTTGATCTTCCACATTTATATCAAACTGTACAAAATTTAGGTGGCTTAAAAGAagtaattgaaaagaaaaagtggCAAAAAGTAGCTGATGGTATGAAAATACCCAGATCAGCCCAAGATAGGGTTACTAAATTAGATGATATTTACTGCAAATATTTACTTCCTTATGATACATTATCTCaagACGAAAGAGATAAGTTATTCAGAGAAGTAGAAGCTGATtggaagaaaagagaaaaaagagatAGACAAGAAACACAGTTAAACGATAATGAAgatgacgacgatgatgatAATACAGAAGAATTAGAAGAATGTATTGTAAAGGGTCGCAATATGCCTTTGAACGCTTTCTATAGAATTGCTCGCAATACACAGAGAATGTGGTTTGGAGAAAATCAACGTGCTTCTACTGGAGGTGCGGAAATGGAAGATGCTTCTGCCGATGAAGTCGAGGCAGCTTTTTGGAAGCACGTTGTCGAAAAGAAAAGACACATATGCGTCCACTCGGCAAGCATTGATTCAAGTGGACGTGGTTTTGGATTTTCCGTGGCCAAAAACAGTCCTTTCGGCCGTCACCCGTGGAACTTGAAAATTCTCACAAACAATGCAGGGTCGGTTTTACGAGCCCTTGGCCCACAAATGGgcGTTACAGTGCCAACTTTACACGTGGGTATGTTATTTAGCGCGTGTTGTTGGTATCGAGATCCACACGGTCTACCTTGGATCGAATATTTGCACACTGGTGCCAAAAAGATTTGGTATGGCATTCCAAATGAGCTAAATGCTACTTTCCGTGAAGCTCTAACCAAAATGTTTCCACGATactgtaagaataaaaaaatttggttgcCATCCGATACGGCGATGGTGCCACCACAGATGCTTGTTGACAACGGTGTACCCCTTTGCCAGACGGTGCAGGAGCCAGGACAGTTCATTGTCGTTTTTCCTAAGGCTTTTACTAGTAGTATCTGTACGGGTTACGTTGTATCAGAAAGTGTTTATTTTGCTCAGATGTCATGGCTCAAGACTGCGGAAGAAGTATTTAAAGATTTACATGATAGCTGTGAaccttcaattttttcttttgaaagacTGTTATTTAGTATTACCAATGATTCTAGATCTCATATTGATGTGCTTAAACAAattttaccgattgttataaaaatttgtgataaagaagtagaaaatcgaaaaaaattgaaagaattggGTCTAACAAATATAGAAAAACTTTCACCtcctgaaaatgaaaaaaaaggaaaaggaaaaaaaataaaagaagatgaAGTAGATTATGAATGTGACACCTGTCGAGCAAACTTATCTGTTTCATTAGTGAGCAATCCTATAGATGgaagtattttttgtttgactCATGCAATAGATTAcatagaaatgaaaaaacaagtATTGAAGAATTGCACTCTTTTGTACACATACAATGAAaGGGAATTGAACGATCTTGTTCATAAATTGAAAGACAGAATCGAAGCCAAAACCAAAAAGACTAATCAAACAAAACAAGTTAAATAG
Protein Sequence
MVLSRNDKRKRKEGDIVDLMDPLAETPKRTKIHAQRKFAQGVATPVFSPISTPVKEKEKVKPAVFTELITHKRPNTEDFLTFLCFRGTSVLPPSLNFFGIGSEAEKLQIKSPQSTSAAKGVSKTNSICGKHTSSIKTECNAKLVSKKIVNKPKKLEIRRITTRSRNDVATPTPASNESPSRRPSRKTKEAAAIYMEILGRKLVSPELDNDDNMSLDSFPELPNARKIAQTEKEIKAKVKSSKVEIKASISMPVSKEKDKEKEKDKIKEKPKEKIKEKEKKISKQKPKEKETSASKLSKKKIAKEKLIIPANKKRTVKVQKYKEINSDDDSMTSEDLLQLNEAIKASTASRRSAPAVLIKDKKQENRDLSTLSKNQTVKPVKNSEPQNSPKAIKENHNKETNKEKAITVSKRKREEKEKVLPKQKSELSKNKNKQFQAEEESEEDNFEGTIAMKKKKISKKEDTKLKDSTKKVIELKNNIDTMETCSSGTGKSPSGEILKSPKRNETTDPNLLSVPLIKSVTVPAAAMTTIKVSDDEESFRGFTKKSVDVYQSNSKTSNILDTIDGKNDITKTQNTLINTTIGLNDIKTTNTFPSIKLMQEQQVDEKKITTDASIKLEPDFKKTCSKNLNVIDMPKSLLHSRKERVNMSTEQIEKWLNESSLAKEESKAEMEKLSNHRLEKNKHSDTPPPIHNHLLISPKIQHLVRPVNVTLSKLSDRLKKASMSPISASRTSVLLTNSFVSTVKPQVPLVLKSKLVQDNIKEDKKEEKKELPPSTSPSRKLSKDSSFNDADSDVVSKSDANSVSDSLDKKSTSSPEKKVFFHQRKSFLPKVKERKPVTSASAFSPENESSVYAFETETEAPVNTPFRRKAKDIGVKDHPGKERNSLQSTKSEEEKTSKHLNSSEEARKDEGKLSPQLETKTPKNFELPKNFTDLTNVQVLPLDKLTTSWSNVNCSASIAVQVNFEEQKQQRQKTNVESDNGTNSAQKSTEISTQTDTGAANDDDDDSGQLFYIPLQAVTRNGSAQGGQQLIQGVAVKLGTEGPTGPNQRVLLKAKLVTKPPVSVARCPPIGTVQPTARAPQNILAEPLDLPSTSHSGMSDDEIKILDDKESNPIGNIDKVNHTEVNYDKVIKNQKIKDRKISTEAIKLTKKAPTKSKHRIYSPINNTKFPRIKYNEQARLVEAPTFHPSEKDFQDPLEYIDKIRPIAEKFGICKVVPPSNFKPECKVSDDMRFTAYNQYIHRMLHRWGPNVKEMMAIKKYLATQSISLTQPPWIGGMEVDLPHLYQTVQNLGGLKEVIEKKKWQKVADGMKIPRSAQDRVTKLDDIYCKYLLPYDTLSQDERDKLFREVEADWKKREKRDRQETQLNDNEDDDDDDNTEELEECIVKGRNMPLNAFYRIARNTQRMWFGENQRASTGGAEMEDASADEVEAAFWKHVVEKKRHICVHSASIDSSGRGFGFSVAKNSPFGRHPWNLKILTNNAGSVLRALGPQMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPNELNATFREALTKMFPRYCKNKKIWLPSDTAMVPPQMLVDNGVPLCQTVQEPGQFIVVFPKAFTSSICTGYVVSESVYFAQMSWLKTAEEVFKDLHDSCEPSIFSFERLLFSITNDSRSHIDVLKQILPIVIKICDKEVENRKKLKELGLTNIEKLSPPENEKKGKGKKIKEDEVDYECDTCRANLSVSLVSNPIDGSIFCLTHAIDYIEMKKQVLKNCTLLYTYNERELNDLVHKLKDRIEAKTKKTNQTKQVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-