Eonu040377.1
Basic Information
- Insect
- Empoasca onukii
- Gene Symbol
- lola
- Assembly
- GCA_018831715.1
- Location
- CM032067.1:15623540-15635795[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.54 54 5.8 0.5 5 21 63 79 61 80 0.92 2 15 0.75 75 5.3 0.2 5 20 93 108 91 110 0.92 3 15 0.053 5.3 8.9 0.4 5 20 123 138 122 140 0.92 4 15 0.032 3.2 9.6 0.1 6 20 153 167 151 169 0.92 5 15 4.9 4.8e+02 2.8 0.1 5 20 198 213 197 214 0.91 6 15 0.38 38 6.3 0.8 1 13 224 236 224 237 0.91 7 15 0.0005 0.049 15.3 1.4 1 21 281 301 281 302 0.96 8 15 0.013 1.3 10.8 1.9 1 21 310 330 310 331 0.92 9 15 0.015 1.5 10.6 2.7 5 21 342 358 339 359 0.92 10 15 0.017 1.7 10.5 3.8 1 23 367 390 367 390 0.94 11 15 0.84 84 5.2 0.3 6 21 406 421 405 422 0.95 12 15 0.3 30 6.6 3.5 3 23 432 453 430 453 0.93 13 15 0.14 14 7.6 1.2 5 21 467 483 464 484 0.94 14 15 0.001 0.1 14.3 1.0 5 21 537 553 535 554 0.94 15 15 0.0003 0.03 16.0 3.2 1 23 562 585 562 585 0.93
Sequence Information
- Coding Sequence
- ATGAGAAGAATGAAGAACAGGAGAATGAGAAATCCAGATCGCACAGACAAGGACAGCCTTCTTTGCTCTCTTTGCGGAAGACCTTACATAATACACAAAGTTCGCATCCAAATTGTAGACAAGCAAGTGGAGATCTTTCATCAGAAGCACTACTGCGTCAATGGGACGTCTTTGGACTTCCACTGCCAATGTGGACAGATCTTTGAATCACAGAAAACTTTGGCGTACCACTTGAATTTTGATTGTGGCCAAAAGTCTTTTCCGGATTATCTGTGCCAGTGCGGGAAGGATTTCGACGATGAGTTGTCCTTGATGCATCATCTTGCCAACGATTGTGACCTGGAGTTGTCTCTAGATTTCATCTGCACTTGTGGGAAGCACTTTAAAGATCGGGACACGTTAGGTGTCCATCAAACAGAATGTCAGAAAGAACCGAAGAAGAGTTTTATTTGCTGGTGTGGAAAGCAGTATGCCGATAAAGAAGATTTGATCCGTCATCGAGATAAAGATTGTAGTATGGAGCAGAAGAGAAATAAATCCAAGAATGAGAGAAATTCCGTTGAGAATGCTCCATCGACTGAGTGGTATTGCAATTGCGGAAATTTGTTTGACAATCAGGATGAACTGTTCGATCATTTGGCCGACTGTATGATCATCAAGCGCAAGAAATACGTCTGCAAACATTGCCGTAGACAGTTTGAAAACAAGGCTATTTGCAACAATCACGTGACAATTTGTGAAGCTGGACTGGTAAAAGATAAATGCGCAAAGTCTTGTAGTAGCAATACAATTCGTTACTACAAGTCCGCTGTGGCTCTGAACGCTGACGGCGCCCCTGTGTTCAAGTGCCTCGCCTGTGGACGCATGTACAAACACCAATCAACACTCGCCAACCACCAGAAGTACGAGTGTGGCAAGGATCCGTCGTTTCTGTGTCCGTTCTGTCCCTACCGAGCCAAGCGCAAGACGCACCTCAAGTCGCACACGAAGAGTTTCTCGGACACGAGCAAGGGCCACGTTTGTGACTGCGGGCGCCgctacaaaaacaaaaatcacttGATCCGACATAAAAAATTCGAGTGCGGTCAAGCCCCGAAATTCTTCTGCCCAATCTGCAACTTCAAGGCGCACAGGAAAGATAACCTTCACCAACACATGGCCTTGAAACACTTGCGCCTGAAGTTTTCAAGCCTGACCAGACAATTCCTGTGTGCTTGCGGCAGTTCTTACAAACACAAGAGAGGGCTCTCCCAGCATCAGAAGTATGAGTGTAATCAGGAACCTCAGTTTGGATGTGATCATTGCGTATACAGGGCGAAGAGAAGAACACATCTGAAGTCCCACTTGGCGTTGAGGCATGGGATCACCCTGGAGTTATTCACCAAGAAGTTCACTTGTGACTGCGGCAGTTCGTACAAACACAAAAAAGGACTTCTTCAGCATCAAAGATACGAATGCAATCAAGACCCTCAATTCCTCTGCAATATTTGTCCTTTCAAATCAAAGAAAGGAAAACCTGACGAAACACATCGCCTTCTTCCTCTCTCTAATCACTTCACGTCACTGTTTCCAGCCCGCTACAACTCGACTGACAGGCAGTTCCCTTGTGATTGCGGGAGAAGGTACAAGAACAAGAAACATCTACAGGAACACCAACGCTACTCTTGCGGCAAAGAACCGACTTTCTCCTGCAGCTTTTGCGATCTCAAGTTCAAGCGACGCAGCACTCTCAACTCCCATGTGATGTTTAAGCATAGCTTCGCGTGA
- Protein Sequence
- MRRMKNRRMRNPDRTDKDSLLCSLCGRPYIIHKVRIQIVDKQVEIFHQKHYCVNGTSLDFHCQCGQIFESQKTLAYHLNFDCGQKSFPDYLCQCGKDFDDELSLMHHLANDCDLELSLDFICTCGKHFKDRDTLGVHQTECQKEPKKSFICWCGKQYADKEDLIRHRDKDCSMEQKRNKSKNERNSVENAPSTEWYCNCGNLFDNQDELFDHLADCMIIKRKKYVCKHCRRQFENKAICNNHVTICEAGLVKDKCAKSCSSNTIRYYKSAVALNADGAPVFKCLACGRMYKHQSTLANHQKYECGKDPSFLCPFCPYRAKRKTHLKSHTKSFSDTSKGHVCDCGRRYKNKNHLIRHKKFECGQAPKFFCPICNFKAHRKDNLHQHMALKHLRLKFSSLTRQFLCACGSSYKHKRGLSQHQKYECNQEPQFGCDHCVYRAKRRTHLKSHLALRHGITLELFTKKFTCDCGSSYKHKKGLLQHQRYECNQDPQFLCNICPFKSKKGKPDETHRLLPLSNHFTSLFPARYNSTDRQFPCDCGRRYKNKKHLQEHQRYSCGKEPTFSCSFCDLKFKRRSTLNSHVMFKHSFA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -