Eonu017557.1
Basic Information
- Insect
- Empoasca onukii
- Gene Symbol
- prdm10
- Assembly
- GCA_018831715.1
- Location
- CM032061.1:7577635-7605434[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.97 96 5.0 0.2 2 23 498 519 497 519 0.93 2 14 6.9e-06 0.00068 21.2 0.5 1 23 538 561 538 561 0.96 3 14 7.7 7.6e+02 2.1 0.2 3 15 569 581 567 584 0.86 4 14 0.0051 0.51 12.1 0.0 1 23 586 608 586 608 0.97 5 14 0.0036 0.36 12.6 0.3 2 23 633 654 633 654 0.94 6 14 0.26 26 6.8 3.0 1 23 668 690 668 690 0.96 7 14 0.031 3 9.7 4.8 2 23 699 720 698 720 0.97 8 14 0.0002 0.02 16.6 0.3 2 23 725 746 724 746 0.97 9 14 0.00027 0.026 16.2 3.7 1 23 752 775 752 775 0.97 10 14 2.7 2.7e+02 3.5 5.9 1 23 780 802 780 802 0.97 11 14 0.00037 0.037 15.7 2.8 1 23 808 831 808 831 0.97 12 14 0.023 2.3 10.1 1.6 1 23 862 885 862 885 0.95 13 14 0.0028 0.28 13.0 2.8 1 23 907 930 907 930 0.96 14 14 0.0083 0.83 11.5 5.5 1 23 968 991 968 991 0.96
Sequence Information
- Coding Sequence
- ATGATGGTGGGAGGAGACGCGGAGGAGCCCAGACCCGTGGACGAGTGGCCACCCCCCTCCAGTCTGGAACTCACTAACAAGGATGTGTCCTCCTCTAGACTTGTCTTGTTAACGTATGTAGAAGAAGATTCAAATGCAATTTTGACTCATGGGCTAGACAGTTTCTCGGATCTAGAGCAGCAGTCGGGTGGAGTGGTGAGCGGGTCTGCGGTTGTGAGTCCTCTCGACCCAAACATGGGCAGTACGGCGTGCTACTCTCCAGTCTACCGACCCTCCTCTCCCCTCATCCCTGCACCAGTGTCCCCGACCGGTGGGTTCCTGAACCCTTCCTCTCCAGGCCAGATCAGAAGTGCGGTGATGCAAGACTCAAACATGATTGTTCTCGGAGACCACTGTCAGTTCACCACCACAGACAACTTTGTTATCACTAATGTACAACCTTTTCCTCAAGCCGTGGACCAAGTTCAATCCACTAACGGAGAAGAAGGGAAATTGTTGCTTCTTTCATCCAATGAAACTAACCAAGCTGATAACGCAACCATCACTTACATGCAATCCTCCGACACTGATGGTCCCAGATTTATTCAGatTCCTAGAGAATACTTAGTCACTTCTCAGCCACCACAAAACACTGCTCATCCGACTAcagaagaaacagctgactTTACAAGTGTTCAGGTTGACAGCAATGACAGCGAGAACAGTAATCTGCGGGTCTTTTTCAGCTCTCTAAAAGATGATGGGATTGTACTGGAGCCTGCAGATCTGAGGTTGGATCCCAGTGTAGATATGACAAGTAGTGACGCACAGCTGGTGGATATGTCACTTCTACAACAGACGACTACTATGCCGATGTTGCAAGCAGCACCTACTGTGACATCGGTTCAGAGACCCTTGCCCAAACCTCCTCAGCTGTTCCCGGCACCTCGAGGCTTACCTGCTCAAGCACCTGCTGCCCCACCTCTCAAGAGCTATTGGTGTGAGGAGTGCAAAAAGCTGCTGCCGTCTGATTGTCGAGAACACACAGTCGAGAGCAAGATATGTGACAAGCCAGTTCCTTCACGAGCCAGAGCCACTCTGCCTGCAACTTACTTGTCCCTCAACAAGCTTCCTGATACTGAAGATTATGGAGTGTTTGCCCGCAAGAGTATTCCGAAGCGATCTCAGTTTGGGCCGATCGAGGGAGTGATAATGAAATCTGACGAAGTGATGATGGTGCAGGAAGGGCCACACCTGGAACTCACAATTGAGACTGAAACTGGAGATATGAGGACTTTAGATGTGTCTAACGAACACATGTCAAACTGGATGAGGTTTGTGCGTCTCGCTACTCCAGACAACCCTCCCAACTTGCTGTTGTCACAGCTTGGTGCATCGTTGTTCTTCACGACGTCCCGCACAATACCTGCCCGCCATGAGCTGCTAGTGTGGTACAGTCCCGCGTACGCTGCACGGCGCAACCTCCCTCTCAGCCCTCGAACACCCGtCTGGATGTGTGCGACTTGTAAGGTTGAGCTTACATCGTCTGAAGAGTTAACTTCTCATTCTCTGCAGCACAGTAAGGAGCGAATGTTGCCTGTTCGTGTCAAGCCTagtGGAAATGCAAGGCAGTATGATTGTGCTGTGTGCCAAAAGCAGTTTGTTCGGAGATCCCAATTGCGCCGTCACATTCTCATCACCCACACCAAAGAAAAGAAGTGGTTTTGCAAAGTGTGCCATATTGGTTTCCCTGACTCATTCAACAGGCTCAGAACGTACTCGTGCAACGTTTGTGGTCTGACATTTGGTGGTTTGGCGTTGCTGAACTTGCACACAGCCGTGCACAGAACCCACTACATCGAGGAGGCGAGAAGTGTGCCTTGCAGTGTGGATCAGCTGACATATGCCACTGTCGAGTCCTGTCCACAATGCTCACTGAAATTCAGCAACAGACAGCAGCTAGAGTTACATGTGGCAGAGCATGGTACCCCGAGAACTCTAACTCACAAGAAGACCTACCCCTACCACTGTAAAGTCTGCAGCAGGAACTTTACATCTATTGTTCGTTTTAAGATGCACGGAGAAACTCATAAGGATGATGACAAGAAGCCACTACAGTGTcaagtttgtttcaaaagattCATGACCAAGTCAGCTCTTACTTGTCACTACAAGACACATAAGgGTTATTGGGAGTGCCCAATCTGTAATCAGAATTTCTCCCACCTTCCTACTTTGCGAGACCATGTGAAAATCCACTCAGTTGGAGGCAATTACCATTGCCCTCATTGTGAGAAGGTGTTTCCAGAGTACACCAATATCCGTAAACATATCAGGTCATTTCACTCAATCAAATCTTTCAGCTGCAATCAGTGCACCCAACAGTTCCACACTGAATACAAACTACGCTTTCATCAACTTAGGCATTCGGACAACAAGCAGTTCATGTGTGACAGTTGCGGGAAACTGTTCAAGCGAAAAGACAAGTTGAACGAACATAAGAAAAAACAACACTCAGACGACATCGCAGACTCGTCCCCATCACAGCCAGAGAGGGTGTTCACCAGGGTGACTGCGAATACATCTGACTACGAGCGCTACATTTACAAATGTCACCAATGCATGTTGGGATTCAAGCGTCGAGGCATGTTGGTCAACCACCTGGCCAACAGACATCCAGAAGTGTCTCCCGATACCATACCAGAACTTAATCTGCCGATACTGAAGACCACCCGTGATTATTTCTGCCAATACTGTCAAAAGATATACAAGAGCAGTTCAAAACGAAAAGCACATATCCTGAAGAATCATCCTGGTCTTGAGTTACCATTGAGTAACAGGCAAAAGGGAGGACTTCCTGAGATTCCAGGAGTGCCGAACCCCACATACTCACAGCAAGTGGGCAGTGTCACAACCAACCCACACAACTGCCAATGGTGTCACAAGCAATACGCAAGCAAGGCTAAGCTGCTGCAACATCAACGCAAGAAACACTTTGCTCAGCTGCCCCACTCTGAACAGCTCAAGGCTCAGTCTCAACAGTTGAAGAATTTGCCTTTAGATGAGTTTTTGGATCAAGGACAGGAAATCCAATTCCAAAATGGGAAGTTTACAACAAGGACTATCAGGCTGGAAGATATCATAGACCATGAAACTGTTCCAGTAGCTCTGTATAAAAATCTTAGTCTCTCACAAGCCATGCCTCTTCCATCAGAATTTGAAGTTGTTGAGTTAGAGGAAGATGCCAATGGTGTTACAACTGATAATACGCTTCTCAACAAACGTTCATCTTTGAAGCAATCAGATAACGTATCAACAGATTTACTGTCGCAAGCAATGTCAGAGATCGGTGTGAGCTTGTCAGACTTGAGCTGGTCAGTGCTGTCGTCTGACCAATGCTTCAGACTGCTACAGTCGCAAGGTGGAATCGACTCAGGCCTGTACACGCCGTATCCCGCTCGCTGA
- Protein Sequence
- MMVGGDAEEPRPVDEWPPPSSLELTNKDVSSSRLVLLTYVEEDSNAILTHGLDSFSDLEQQSGGVVSGSAVVSPLDPNMGSTACYSPVYRPSSPLIPAPVSPTGGFLNPSSPGQIRSAVMQDSNMIVLGDHCQFTTTDNFVITNVQPFPQAVDQVQSTNGEEGKLLLLSSNETNQADNATITYMQSSDTDGPRFIQIPREYLVTSQPPQNTAHPTTEETADFTSVQVDSNDSENSNLRVFFSSLKDDGIVLEPADLRLDPSVDMTSSDAQLVDMSLLQQTTTMPMLQAAPTVTSVQRPLPKPPQLFPAPRGLPAQAPAAPPLKSYWCEECKKLLPSDCREHTVESKICDKPVPSRARATLPATYLSLNKLPDTEDYGVFARKSIPKRSQFGPIEGVIMKSDEVMMVQEGPHLELTIETETGDMRTLDVSNEHMSNWMRFVRLATPDNPPNLLLSQLGASLFFTTSRTIPARHELLVWYSPAYAARRNLPLSPRTPVWMCATCKVELTSSEELTSHSLQHSKERMLPVRVKPSGNARQYDCAVCQKQFVRRSQLRRHILITHTKEKKWFCKVCHIGFPDSFNRLRTYSCNVCGLTFGGLALLNLHTAVHRTHYIEEARSVPCSVDQLTYATVESCPQCSLKFSNRQQLELHVAEHGTPRTLTHKKTYPYHCKVCSRNFTSIVRFKMHGETHKDDDKKPLQCQVCFKRFMTKSALTCHYKTHKGYWECPICNQNFSHLPTLRDHVKIHSVGGNYHCPHCEKVFPEYTNIRKHIRSFHSIKSFSCNQCTQQFHTEYKLRFHQLRHSDNKQFMCDSCGKLFKRKDKLNEHKKKQHSDDIADSSPSQPERVFTRVTANTSDYERYIYKCHQCMLGFKRRGMLVNHLANRHPEVSPDTIPELNLPILKTTRDYFCQYCQKIYKSSSKRKAHILKNHPGLELPLSNRQKGGLPEIPGVPNPTYSQQVGSVTTNPHNCQWCHKQYASKAKLLQHQRKKHFAQLPHSEQLKAQSQQLKNLPLDEFLDQGQEIQFQNGKFTTRTIRLEDIIDHETVPVALYKNLSLSQAMPLPSEFEVVELEEDANGVTTDNTLLNKRSSLKQSDNVSTDLLSQAMSEIGVSLSDLSWSVLSSDQCFRLLQSQGGIDSGLYTPYPAR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -