Eonu004620.2
Basic Information
- Insect
- Empoasca onukii
- Gene Symbol
- L
- Assembly
- GCA_018831715.1
- Location
- CM032058.1:76639131-76646489[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.55 54 5.8 0.1 3 23 72 92 71 92 0.98 2 17 0.013 1.3 10.8 0.6 2 23 114 135 113 135 0.97 3 17 0.084 8.4 8.3 0.4 3 23 145 166 143 166 0.92 4 17 0.067 6.7 8.6 0.1 1 23 171 194 171 194 0.92 5 17 2.4 2.4e+02 3.7 0.3 1 23 201 226 201 226 0.92 6 17 0.51 51 5.8 0.4 1 23 245 267 245 267 0.96 7 17 0.54 53 5.8 8.7 1 23 271 293 271 294 0.95 8 17 2.6 2.6e+02 3.6 0.2 2 23 351 374 351 375 0.83 9 17 0.00016 0.016 16.9 4.3 2 23 387 408 386 408 0.96 10 17 0.00052 0.051 15.3 2.2 1 23 420 442 420 442 0.98 11 17 0.11 11 7.9 0.6 2 23 450 471 449 471 0.96 12 17 0.0009 0.09 14.5 0.1 2 23 551 573 550 573 0.95 13 17 0.49 49 5.9 0.2 1 23 577 599 577 599 0.96 14 17 0.19 19 7.2 0.1 2 23 609 630 608 630 0.95 15 17 0.00038 0.038 15.7 0.0 1 23 638 660 638 660 0.97 16 17 0.055 5.4 8.9 1.3 1 23 667 689 667 689 0.96 17 17 0.078 7.8 8.4 0.1 2 23 739 761 738 761 0.95
Sequence Information
- Coding Sequence
- ATGGGACTTTTCTCTCAAGCTATCATGGAGCAGGTGAAGCCGACAGATTTATCATTGGGCAAAAAACCATCTCAAAGACTGCCAGAAGATAGACCTCCAACAAAAAGGCCAAGACACACAGAAAATGGAGTACTATCAACGAATGGCGTAGAACCAAACAGGAGAACTCCAACAACGAACCAACCTCAGTACGATCACCCAGGAACACTCCTGTGTAACCAGTGCAACGCGGCGCTGCCTGACTTCGAGGCGTTCAGAAGCCATGTCAAGTCTCACCTGGACGAGGCTGGACTGAGAGGTCTGCTCGGAGGCAGTGAGCCCAGGAAGACACCCCCGACTGTGTGCCCTCACTGCGGTGTCCAGCTCAGATCTCAGGAGGAACTACCACACCACATAATGAGTCACTTCCTTTCCACTGCCATCGAGTACGGCTGTCAGAGCTGCATGAAACTGTTCACCAAACCTGACGAGTTGCAGAAACACCTGATGGACCTGCACGCACACCACCTCTACAGATGTGCTCTCTGCAAAGAGATGTTCGACTCCAAAGTTGCTATCCAGGTCCACTTTGCAGTAAAGCACAGCAATGAGACGAAACTGTTCCGATGTACTGCTTGTCCCACAGTTACAGTGTATCGTACTGAAATGGACTTCTCTCTACATGTGAGAACCATGCACACGCCTCAAAACATTCCGTCACCCAAGCCACCAGTTGTTCAGCAGACGCAGATGTTCCGGTGTTTGTTTTGCCGACTCAGTTTCCAGAGTGAGTTGGAGATGCAGCTTCACTTGGCCGTCCACACCAAACAGTTCCATTGTCACCTGTGTCAGGAGTCCTTCCACATTGAGTTTCTCCTGGACAAGCACATGCAAACCCACCACTCCGCCCAGATTAATGGAACGGATGAGATGGAAAACCACTCCAAACTTGGTAGAGGTGGTATGAAAACTCCCACGCTCACTTCGTCAAACAACTCTCAAAGCCGAACAAACGGCAGCATGTTAGATAACAAGAAACAGGACTCAGCTAACAACAATAACGTCATCGGGACTTGTGAGATCTGTGAAAGAGGAGACTTTTCAAGTGAAGCAGAGCTTGCTGCACATAGGAAACTTGTACATCACGTCAGGAGTTCTTCTTCTGGAAAGCTAAGCCTGCACTGTGCATACTGCAACGAGAGCTGCAAGTCACGCTCAGACTTGGAAAACCACATGAAGAGTCACTCGCAAGGTTGCGTCAACATCTCGCAGGGCAAACACAAGTGCAACATCTGTGACGAGATGTGTAGCTCCGCCACCAGTCTGGCTGAACACAAGCTCACGCATTGCAAGGTTATAAACGGAAGCTCATGCACACAATGTAAAGCCTCAATAGTAAATGAAGATCAGTTCTACCAACATTTGCGGCAACACAGCAACACCTCTGCTTCTGGAGACAGTCCTACCAATCAGCTAGTGCTGCCAACTGCTTGTGTCATCTGCAGACAGACCCTGGTGTCTGATATGGAAGCAAGAATCCATGCACGTTTTCACCTCAACCAGCCGGAGAGCTCGCAGTGCAACGTGTGCCTGCATGTCAGTGAGAGGAGGTCTCTGATTGGTGGTGTGTGTGTCGACTGCTACCACAAACACGGCAAGGAGACTCCCACCAAGTGCTCAGAGTGTCAGCTCAAGTTCGAGACAGGATCGGCTCTGGAGGCGCACATGAACGCAGTGCACCGCAAAACATACCAGTGCATCAAGTGTCagGTGAGTTTTGAGACCGAGAAGGAGATACAGATGCACGTCGCCTCCCATCTGATCTCCGAGGGCAACTCCGGGCTTGAGTGTCGCTTGTGTTTGCGAGTGCTGAGTTCACCGCTGCAGCTCCAGACACATCTCATCGAGCACACGTTTGTCGGCTGCCCCACCTTCACCTGCTACATCTGCAGTGCCGTGTTCACGGCGGCTAGTGGCCTGCAGGCACACATGCTGGAGCACGGGCTCGCAGCCAGACCTTACGACTGCCCTAACTGCTCTCAGAGGTTCTTTTTCCGAGCCGAGTTAGACAATCACAGTTTTACACACCTGGATCAAGAAAAGGCTGATCAACGAGAGAAGACATCACCGTTTTATCCCTTTAAGTCAAAACTGGAATCTGAATCTTCAGCAGTGTCCTCTGGCAGCAGTGTTGGAACCTCCCTGAGTTCGGATATGAAACACAACTTCAGTGTCAGATGCTCTATTTGTTACGTAGAGTTAGAAAACTCAGCTTCCCTGCAAAATCACCTACAACAAGTCCACGGCACAGACAACAAGAAATCTGAAATCACAGAAACAATAATAAAGAaggaaataaaacaagaaacaatGGAGGACGTTGAGGAAGAGCAAGAGGATGAAGACGAAGAGCAGATCGATGTTGGAGACCACAATAGTGAGGAAGCAGTAAACTGTGCATCAAAAGCAGAATCCATTGAAGAAGCAAAAGAAGCTTCTCAAACAGCGTAA
- Protein Sequence
- MGLFSQAIMEQVKPTDLSLGKKPSQRLPEDRPPTKRPRHTENGVLSTNGVEPNRRTPTTNQPQYDHPGTLLCNQCNAALPDFEAFRSHVKSHLDEAGLRGLLGGSEPRKTPPTVCPHCGVQLRSQEELPHHIMSHFLSTAIEYGCQSCMKLFTKPDELQKHLMDLHAHHLYRCALCKEMFDSKVAIQVHFAVKHSNETKLFRCTACPTVTVYRTEMDFSLHVRTMHTPQNIPSPKPPVVQQTQMFRCLFCRLSFQSELEMQLHLAVHTKQFHCHLCQESFHIEFLLDKHMQTHHSAQINGTDEMENHSKLGRGGMKTPTLTSSNNSQSRTNGSMLDNKKQDSANNNNVIGTCEICERGDFSSEAELAAHRKLVHHVRSSSSGKLSLHCAYCNESCKSRSDLENHMKSHSQGCVNISQGKHKCNICDEMCSSATSLAEHKLTHCKVINGSSCTQCKASIVNEDQFYQHLRQHSNTSASGDSPTNQLVLPTACVICRQTLVSDMEARIHARFHLNQPESSQCNVCLHVSERRSLIGGVCVDCYHKHGKETPTKCSECQLKFETGSALEAHMNAVHRKTYQCIKCQVSFETEKEIQMHVASHLISEGNSGLECRLCLRVLSSPLQLQTHLIEHTFVGCPTFTCYICSAVFTAASGLQAHMLEHGLAARPYDCPNCSQRFFFRAELDNHSFTHLDQEKADQREKTSPFYPFKSKLESESSAVSSGSSVGTSLSSDMKHNFSVRCSICYVELENSASLQNHLQQVHGTDNKKSEITETIIKKEIKQETMEDVEEEQEDEDEEQIDVGDHNSEEAVNCASKAESIEEAKEASQTA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -