Eonu029320.1
Basic Information
- Insect
- Empoasca onukii
- Gene Symbol
- -
- Assembly
- GCA_018831715.1
- Location
- CM032063.1:53058256-53059455[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.94 94 5.0 0.0 3 20 52 69 50 71 0.93 2 12 0.027 2.7 9.9 2.0 1 23 74 96 74 96 0.97 3 12 0.0056 0.56 12.0 2.5 1 21 99 119 99 120 0.94 4 12 0.0092 0.91 11.3 2.2 2 23 129 151 129 151 0.95 5 12 0.00076 0.075 14.7 1.7 1 23 157 180 157 180 0.96 6 12 6.4 6.4e+02 2.4 0.2 3 23 188 209 186 209 0.72 7 12 3.3e-05 0.0033 19.0 0.8 1 23 219 241 219 241 0.97 8 12 1e-05 0.00099 20.7 1.3 3 23 248 269 247 269 0.97 9 12 0.23 23 6.9 4.1 1 21 275 295 275 300 0.94 10 12 4.5e-05 0.0045 18.6 0.4 3 23 311 331 310 331 0.98 11 12 0.00084 0.083 14.6 0.2 1 23 337 359 337 359 0.98 12 12 0.026 2.6 9.9 1.4 1 21 365 385 365 386 0.89
Sequence Information
- Coding Sequence
- ATGGTTGAAAAGCCTAGACCGAGGAAAACTGTAcctaaaaaaaggaaaagagaGGTAATAGAGAGTGAAACTGAAGAAATCGAAGAACAAAACTTGAGCCAACCGAGTGACATAGAAGAAGATGAACTCCCTCAAGTAGAATCCGCAACATTTTGTGCTATCTGTCAGTTAGAGTTTTGGTCTCCTGAGTTGTTGAAAAGTCACATTGAGGGAACTAATTTCACTTGTAGAGTTTGTACGGAAGATTATCAAACTCATTCAGAACTGGAAAGTCACTTTGTAACTCACACTCCTTACAGATGTAAGATCTGTAAGAAAAAGTTCTTCAGCAGAAGAGATGTTTATATTCACAGGAAGAACTCGACCACGTGCAACGCCGTTGCAACCTGCGAACTGTGCAAGAAAAACTTCTTCAGCAAGGAAGCATACAATCTGCACACAAAGAATTTTCACACCAACGCTCAGAAACATATCTGTGTGATTTGTCAGAGGAGTTACAGGCTCAACCAAACTCTGAATCAGCATTTGAAAACTGTGCACATAGTCCACGAGTATATTGAGTGCAGAGTGTGTCAGAGACTATTGCTGGGTCCTGACAGACTGAAGAACCACATGAAGTACGCTCACATTGACGGACAAGAGTCGAGCTACACATTCAGTTGTCCGACTTGCAGCAAAGTGTTCAAGAACGAGAAGTTCTTGAGAGCCCACAAGGCGATCCACGAGTACAAGCTGAGCCTGTGCGATCTCTGCGGTAAACCGTTCAAATCCAAGGCCTTGCTGAACCATCACATCAAGTATCAACACACCAAAGTGGGGACCTTTAGGTGTGAGCCTTGCAACAAATACTTCAACACCGAGCAGAAGTACAAGAACCACATTAAACACAGTACAAAACACAAGGTGGAAGACAACACACCGGCAGCTTTCTGTGAGATTTGTGGCAAAGGGTACAAAACTGAGCGAGTGTTGAGGGAACACCTTCGAACCCACTCGGATGAGAAACCGTTCAAGTGCCAAATCTGTGGAGCAGCGTTTAAACAGCTGGTGATATTGAGAACTCACAGCAGAATCCACAGTAACGAGAGCAAGTATAACTGTCCCCACTGTGGCATGGCCTTCAAGTGGAAGCAGACCTTCGATAACCATCGCAAGAAGTGCTTGGGTGTACCGATGGCTCCGAGATATCATCATCTGTAG
- Protein Sequence
- MVEKPRPRKTVPKKRKREVIESETEEIEEQNLSQPSDIEEDELPQVESATFCAICQLEFWSPELLKSHIEGTNFTCRVCTEDYQTHSELESHFVTHTPYRCKICKKKFFSRRDVYIHRKNSTTCNAVATCELCKKNFFSKEAYNLHTKNFHTNAQKHICVICQRSYRLNQTLNQHLKTVHIVHEYIECRVCQRLLLGPDRLKNHMKYAHIDGQESSYTFSCPTCSKVFKNEKFLRAHKAIHEYKLSLCDLCGKPFKSKALLNHHIKYQHTKVGTFRCEPCNKYFNTEQKYKNHIKHSTKHKVEDNTPAAFCEICGKGYKTERVLREHLRTHSDEKPFKCQICGAAFKQLVILRTHSRIHSNESKYNCPHCGMAFKWKQTFDNHRKKCLGVPMAPRYHHL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -