Basic Information

Insect: Empoasca onukii
Gene Symbol: Clamp_1
Assembly: GCA_018831715.1
Location: CM032063.1:33364212-33371489[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4.1e-06 0.00041 21.9 2.1 1 23 172 194 172 194 0.99

2 7 0.00012 0.012 17.2 1.2 1 23 339 361 339 361 0.98

3 7 2.9e-07 2.8e-05 25.5 0.3 1 23 367 389 367 389 0.99

4 7 1.5e-06 0.00015 23.3 1.3 1 23 395 417 395 417 0.99

5 7 1e-06 0.0001 23.7 1.9 1 23 423 445 423 445 0.99

6 7 1.9e-05 0.0019 19.8 1.0 1 23 451 473 451 473 0.98

7 7 7e-05 0.007 18.0 1.0 1 23 479 501 479 501 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4.1e-06	0.00041	21.9	2.1	1	23	172	194	172	194	0.99
2	7	0.00012	0.012	17.2	1.2	1	23	339	361	339	361	0.98
3	7	2.9e-07	2.8e-05	25.5	0.3	1	23	367	389	367	389	0.99
4	7	1.5e-06	0.00015	23.3	1.3	1	23	395	417	395	417	0.99
5	7	1e-06	0.0001	23.7	1.9	1	23	423	445	423	445	0.99
6	7	1.9e-05	0.0019	19.8	1.0	1	23	451	473	451	473	0.98
7	7	7e-05	0.007	18.0	1.0	1	23	479	501	479	501	0.97

Sequence Information

Coding Sequence: ATGGCGCTGGAGTCCAATGGGTCGTGGATTGCGACGAAGGGCAACGAGCAACAACTGTTCGTTTCGGAAACAGTTCACACACAGCAAAGACCTCAAGTGAAGGTGGTTAACAAAGAACAAACGCAGACTGAGAGGTTCACCCAAACCGAATACAGAGGAAATGCAATCGAAATCGTGGTTCCAGCAGCAGGTCAAAAAGAGGTGGTCATGTTCGAGCAATCAATACAACAGCAACAACCACAGACTTTACCTGTCCAGATGTATTCAACGATCGAGAAGAAGGATCTGGTTCCTGACAAAGCCACTAACATCACAGAGTTTCCTTTCTTATACAACGTAAACATGATCCAGAAAGTTCATCAGACACAGGCAGGGAGTCCTACTACCACAGCTGTCGCCAGCATTTCAACTGATGATAAAACATGTTACAGATTCGATGTGGCACAGCCGTTCGGTTACAACTATGCTTTGGTTAACCAAATGTCCCTAGCAGCGGCTGCTTCAACGGCCACATTTAAGTGTGAGATTTGTGGTTTAGTGTTTGCACATTTATCTTTGTTGAACCATCATAAACGTATTCATACTGACAACGGAAATTCAGGTGCTTCAACAGAAAGAACTTTTCATAGTGAACCGATCCCGGTCGCttcaattaaagtattaaaagcTCAACCAGCTAAGCCACAAACTTGCAATAGATGTGGAGGAAATGTGGTTGATTGTGAGCATGAAACAACGGACGAAGGAGGAAAGAAGAAAGTGACTAAGTTCGTCAAGTGTGAGTATTGCCAAGCAGGACCTACACCGACAACTAACACACTGACGACTAATGGATCATTCTCATCTACTTCTCCTGAACCCACTGAGAGTCCCCCAGATCTCCTTAACATACCGAATAAAGGTCTCCAACTCATAAAACGGCACGGTTTAGCGACTGTGACAAAATGTCACAAATGTAATGGGTCGGGAATCATTTTCATCGGCGGAGCAAAACCTCCACCTACGGACAAACCTTTTCGGTGCAATGTTTGTGATGGCCAATTTTCTAGGTATTCCTCGTTGTGGAGTCACAAACGTCTTCATTCAGGTGATAAACCGTTCAAGTGTGATATTTGTGGACTGACATTTGCCAGACAAGCATATTTGAAAAATCACGTCCGAGTCCATAGTGGAGAGAAACCTTACAAATGTGAAATATGTGGCATGCAGTTCTCTCAATCACCTCACTTGAAGAACCATGAGAGGATTCACAGTGGAGAAAGACCTTATCAGTGTGAAGTTTGTGAAAAGACTTTCGCTCGTCACTCGACGCTATGGAACCACAGACGGATACACACTGGTGAAAAGCCGTATCGGTGTAATGTCTGTGGTTCCGCTTTCAACCAAGCAACACATTTGAAGAACCATGCTAAAGTACATACAGGTGAGAAACCACATCGATGTGATATTTGTGATGTCGGATTCTCAGACCGATTTGCTCTCAAGAGGCACAAGTTAATACATGAAAAATATGGACGAACTACAAGAGACGCTCAGCagcaacaaaattcaaatccaCAGAATCACCCTCCATCACAAATGAGCGAAGTGTATAAGTGCGATGTCGCTTTTCCCGGGCAACAACCAAACACAAGCACCAATAGTGATCagcaacaaacaaatcaaaatgttgaCATGTACAAATGTGACGCAACTACTTCGGTAACATTCCCCGCTTCTTCTCAGCAAACTGATATATACAAGTGCGATGTTGGTACGTCCGTGTCATTCTCACAGCAGCAATCATCACAAGCAAACAGTACTGCATCACAAGCTTCCCAATTAACTGATTCAATAGTTGTAAGAGTAGATGCTAATAACCACTCATATCAGTCTGTACAGCCTAATCAAAAATCAACTAGTTCAAATAATCATAACCAACAAGCCAACCAGATGAGAGAAATGTTCAAGTACGATGTCAACAGTTCAATCGCATTTCCTGGGCAGTCGTCACAGTCTCAAACTTCTACATCAAATACTCCGACTATTCAAGTATCCCAGTACTCCGGTCAGACTAACGTCCAACAGCAAACGGCAACAACTTCCTCATCTTCACAAATCTCTCAGTTTGATTCTGGTGCTTCGACTGTTTCTTATTCTACTGTCACTCAAAACACACAATCCGATGCTCAACAAACATCGGCAACAACCTACCCTCTCGATCCTGATGGTGGGTCTGCCACCTGCGGCCTCAAACAATGGGTTGAATGGAACCCTCAGGAAGGAGGAGTGAAAGAGGAAGACCAATAG
Protein Sequence: MALESNGSWIATKGNEQQLFVSETVHTQQRPQVKVVNKEQTQTERFTQTEYRGNAIEIVVPAAGQKEVVMFEQSIQQQQPQTLPVQMYSTIEKKDLVPDKATNITEFPFLYNVNMIQKVHQTQAGSPTTTAVASISTDDKTCYRFDVAQPFGYNYALVNQMSLAAAASTATFKCEICGLVFAHLSLLNHHKRIHTDNGNSGASTERTFHSEPIPVASIKVLKAQPAKPQTCNRCGGNVVDCEHETTDEGGKKKVTKFVKCEYCQAGPTPTTNTLTTNGSFSSTSPEPTESPPDLLNIPNKGLQLIKRHGLATVTKCHKCNGSGIIFIGGAKPPPTDKPFRCNVCDGQFSRYSSLWSHKRLHSGDKPFKCDICGLTFARQAYLKNHVRVHSGEKPYKCEICGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNVCGSAFNQATHLKNHAKVHTGEKPHRCDICDVGFSDRFALKRHKLIHEKYGRTTRDAQQQQNSNPQNHPPSQMSEVYKCDVAFPGQQPNTSTNSDQQQTNQNVDMYKCDATTSVTFPASSQQTDIYKCDVGTSVSFSQQQSSQANSTASQASQLTDSIVVRVDANNHSYQSVQPNQKSTSSNNHNQQANQMREMFKYDVNSSIAFPGQSSQSQTSTSNTPTIQVSQYSGQTNVQQQTATTSSSSQISQFDSGASTVSYSTVTQNTQSDAQQTSATTYPLDPDGGSATCGLKQWVEWNPQEGGVKEEDQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -