Eonu026724.1
Basic Information
- Insect
- Empoasca onukii
- Gene Symbol
- -
- Assembly
- GCA_018831715.1
- Location
- CM032063.1:16348711-16361308[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0025 0.24 13.1 1.0 1 20 169 188 169 191 0.93 2 22 0.00051 0.051 15.3 0.7 1 23 252 275 252 275 0.97 3 22 0.015 1.5 10.7 4.0 2 23 282 304 281 304 0.93 4 22 0.0012 0.11 14.2 0.3 2 23 385 407 384 407 0.95 5 22 0.036 3.6 9.5 0.8 1 23 448 471 448 471 0.95 6 22 0.17 17 7.4 1.0 3 23 479 500 477 500 0.93 7 22 4.2 4.2e+02 3.0 1.5 1 23 512 534 512 534 0.97 8 22 0.00067 0.066 14.9 0.6 1 23 575 598 575 598 0.97 9 22 1.3 1.3e+02 4.6 1.2 1 23 617 640 617 640 0.94 10 22 0.72 72 5.4 0.7 2 23 647 670 646 671 0.90 11 22 0.1 10 8.0 0.1 2 23 680 702 680 702 0.94 12 22 0.26 26 6.8 0.3 1 23 708 731 708 731 0.94 13 22 6.3e-05 0.0062 18.1 3.7 1 23 740 762 740 762 0.97 14 22 0.0035 0.34 12.7 0.7 3 23 818 839 817 839 0.94 15 22 0.014 1.4 10.7 2.5 2 23 846 867 845 868 0.94 16 22 0.092 9.2 8.2 5.1 1 21 893 913 893 914 0.88 17 22 4e-05 0.004 18.8 0.2 1 23 936 959 936 959 0.98 18 22 3.1 3.1e+02 3.4 0.3 1 23 962 985 962 985 0.94 19 22 0.067 6.7 8.6 2.8 2 23 992 1015 991 1015 0.92 20 22 0.1 10 8.0 0.7 3 23 1025 1046 1024 1046 0.95 21 22 0.0084 0.83 11.5 2.8 1 23 1083 1105 1083 1105 0.98 22 22 0.033 3.2 9.6 1.9 1 23 1110 1132 1110 1132 0.90
Sequence Information
- Coding Sequence
- atgtctgaTTTTGGGGATAATTTTAGAGAGTTGTGCCGGCTCTGTGCCTCTTTCGATGCCATCAAGATGGACATGTTCGGCGAAAAAGGAAAGGAAAGGAAACTTGCGGAGAAGATACATGCCTGCCTGCCTGTAAAAGTTTCTGAAGAAGATCTCTTGCCTAAATCCCTGTGCTACCGATGTATATACAATTTGGAAAACTTTTACGATTTCCGCAAAGGTTGCGTAGAAGCTGTGTCTCGGCTAGAGAATTATGTCAATGAAACCTGGGGGAATGCTCTGCAACTGCAATATAAACCCCAGAAGAATGTACCGCAGgaTAATGATGGCGAGAACACTTCGAATCACAGTGTTCACTCTGACTATGCGGACAGCCAAGAAGCCCCGAATCCAGCAGACTTCCTGGAAGCTTGCATGAACAACGAGCCTATCCAGTCTCCGTCGCAGAGGTACGAGCAACCGCAGTTCCAGCAGGACCAGGTGATTGAGGTGAACGCCGGCTCCTTTGTCTGCCCCTCCTGTCCTCAGAGCTTCACCAACATGTCCGATCTCATTGTACACTCCAAGTGTCACTTGGGAGGAGGTACCTTGACGATGACGGGCAAAAAAGAAGCAATCCGCCTCTACTCATGCCCAGTCTGTGAAAACCTTTGTTTCCAAGGGAAACCTCTCCAACCATATCAAAGTACATTCCACCGACTTCCACTCACAAGTTCAAGAGAGAGACGAGTGACTGACTTGTGTTTTAGGCCGTTCCGGTGTGAGTTGTGCAACAAGACATACACTGTGGCAAAGCACCTCTGGGGCCACGTGAGCACAGCGCACCGCGGCAACCCTCGGGTCACCTGTCCTCACTGTCTGCGCATCTTCTCTACCAGCCAGAACCTCGAGGACCACTGCAAGACCAAGCACGCAGCTGAGTTCCAACCATCGgtCGATGGTCCCAGTAATCCAAATGGAGAATCAAGTCAGCATTTAGAATACAGAAACCACCCGAGTGAATTCCACGTACAGTCACAAAATGAAGAGTCAAATAGTAGAAGAAAAAGCTCCAATcctagaaaaattaaaagggAGAACAGTTCTGAATATGATCAATCACATAACTTAGTTGAAGAAGACAGTGAAATGATGGGTGAACAAACGTCGATTTCTTGTTTGCTTTGtaataagttatttgaaaatagaaacgatttaagaaaacacattttggtcGGTCATGGAATTGATCCAGCAGAGGTGGGATATCCAGACACAGCAATGGATGAGTTGTCAATTCAACGAACCAAACATATGGACGAAAGTGAGATGGCTGAAAGTATGCTTGAATCAGAGACTGTGTTTTGTTGTGAAGTTTGCATCCGAGAGTTCAACGACAGGGCAAGCCTATGGCTGCACATGTTGTATTCCCACAGAGAGGAAGCTTCCACTGCCTGTGGAATCTGTCTGAAAGTGTGTTCTGATAATGTAAGTCTCTTGGAGCATGTTGATTCTTGCCATCCTAGAGACACCATGTCGAACGAGAAAAGAAGGTACAGTTGCCAGATATGCGTTCGGCAGCATGATTCAAGGAAAAAGTTATTGGTGCATGTAAAGATACATAACTTGAGAGATGCGGACGGAAGAGCGCTAGATCCGGAGTCAATGGTTGTGTTGAACAGTGACATGTACAATCAGGACGTTCCTCCTTCCAACGAAGTCGGGATGGATGACGAGTTTTCTTTCAGCTGTGAGATATGCTTTAGGTCCTTCCCCTCAGAGGTTAAACTGGTGAAGCATAAAAGAAACGCACACAAAGACTCGGAGTTGATGCACAGTTTTAACAGTTCAGCAACTTATAAGCTGTATTTCACCTGTGAGGTGTGTGGCTTAGCTCATTCGACCCGAACGGAGCGCTGGAAACACGTGTTCACCAATCACGCTAACGAGCCGACTCTGGTGTGTGATAAAGAAAAGTGTGCCAAGGTTTTCCCAACCAAAGCTCTCAGAACCGAACACGTAACAAACCACCATGATCTTCAGGGTGATCTTCCGAACACGTGTGAAATATGCGGCAAACTGTGGGCGACAAAGCTTAACTATTGGAAGCACATGATGGGTGTGCACGCTGATTCTTTGCCTTTTATCTGCGGGGTATGCTTGAAGATAACGTGTAGTGTTGCAGACTTACAAGCTCACGTTAAAGACAAGCACTATCCTCTTGATAACTCAGTAGAGTTTTGCTGTGATATTTGTGGCAGACCGTATTCTAAGAAATCTAAAATGACTAGACATCGGAGAATTCACAACTTGCCATCAGCTGAGGGTGGACTGGAAGAAGGACTGTTTGAGCTGCAAGAGGCGGCGGCAGCTAAAGAAGAGGCTCTAAGGTGTGACGAGTGCCCGACAGAGCAGTTCCTAGACTTAGAGGAGCTCTCAGAACATCGTAGGTCAGCGCACGACCTGGCCCCTTGCGATCTGTGTCCCAAGTTTTACGGAAGAACCTCTCATCTTTGgaaacatgtttacaaaatacacaagaCCCACCCAGATGTAACCTGCAATATTTGCTTGAAAACCTCCGCCTCACGGGTGCACTTGGCAAAACATTACGCAAAACACCATAAGGACCATCCTTCAGTCGCAGACACAAGCTATGTAACCCTCCAAGACGTTGTTAACAATCCAGGAGAAGCCCACAACTGTACTAAGTGTAACAAAGTGTTTCGCAAAGACCACTTGATGAGACAACATCTCAAGCATTGCACAGGTCCCAGAGAACCAGACGATGTGAAAACATTTACTCCGGCTTCAGTCAATGGATCTTTCCCTTGTGAGAAGTGTTCTAGAGTCTTTGATACACCGGGTGTTCTGCGTAAACATGTACGCACGTCACACATCACCTATTCATGCGAACTGTGTGAAGTGTCTAAAGACACAAAAACTGAGCTGTTTGATCATGTCTCATCAGACCACACCAACCATCCTGATCTCACCTGTGATGCTCCTGACTGCAACAAAATGTTTAGGAGCTCAAAAGACTGTACAAAACATAAGAAAGACCACAAATATTCAGGCAACATTCCTCCATCTTGTGCGTTCTGTGGTGAACTGATCACTAACAGAATCAAACTTAGGAAACATCTACGATCTAACCATGCAGAAAAGTCCAAATACATGTGCTCTTTGTGCGCAATATCTCATTTGTCATTCAATGACTTGCAAGATCACATAAGACAAAATCACCCGTCTTGTATAGGTAAGATGTATACTTGTCAGATTTGTGCTAGAAAGTGTCCGACCAAATACAAGCTTGACACCCACCTGAAAGTGCATGGAAGTGAGTTTTTCAACTGTTTGACCTGTTACAAGGTGTTCACAGATGAAAACGAATTCAAAAAACATGACAAAGTTCATCCACAGAAAAAACTAAATACTCCAAAACTAGAGGAGAAAATCAAAGACTCCGATGATGAAAGTGAAACTGAAGAAGGCTCCAAGCGCAAGCGGTCCCCAGAAAGCCATGGTGAAGAGAAGCTGATGAAGTTATCACATAATTGTGTGTGTTGCAAATTAACCTTTGGTAGCAACGACAGTTATGATCAATGA
- Protein Sequence
- MSDFGDNFRELCRLCASFDAIKMDMFGEKGKERKLAEKIHACLPVKVSEEDLLPKSLCYRCIYNLENFYDFRKGCVEAVSRLENYVNETWGNALQLQYKPQKNVPQDNDGENTSNHSVHSDYADSQEAPNPADFLEACMNNEPIQSPSQRYEQPQFQQDQVIEVNAGSFVCPSCPQSFTNMSDLIVHSKCHLGGGTLTMTGKKEAIRLYSCPVCENLCFQGKPLQPYQSTFHRLPLTSSRERRVTDLCFRPFRCELCNKTYTVAKHLWGHVSTAHRGNPRVTCPHCLRIFSTSQNLEDHCKTKHAAEFQPSVDGPSNPNGESSQHLEYRNHPSEFHVQSQNEESNSRRKSSNPRKIKRENSSEYDQSHNLVEEDSEMMGEQTSISCLLCNKLFENRNDLRKHILVGHGIDPAEVGYPDTAMDELSIQRTKHMDESEMAESMLESETVFCCEVCIREFNDRASLWLHMLYSHREEASTACGICLKVCSDNVSLLEHVDSCHPRDTMSNEKRRYSCQICVRQHDSRKKLLVHVKIHNLRDADGRALDPESMVVLNSDMYNQDVPPSNEVGMDDEFSFSCEICFRSFPSEVKLVKHKRNAHKDSELMHSFNSSATYKLYFTCEVCGLAHSTRTERWKHVFTNHANEPTLVCDKEKCAKVFPTKALRTEHVTNHHDLQGDLPNTCEICGKLWATKLNYWKHMMGVHADSLPFICGVCLKITCSVADLQAHVKDKHYPLDNSVEFCCDICGRPYSKKSKMTRHRRIHNLPSAEGGLEEGLFELQEAAAAKEEALRCDECPTEQFLDLEELSEHRRSAHDLAPCDLCPKFYGRTSHLWKHVYKIHKTHPDVTCNICLKTSASRVHLAKHYAKHHKDHPSVADTSYVTLQDVVNNPGEAHNCTKCNKVFRKDHLMRQHLKHCTGPREPDDVKTFTPASVNGSFPCEKCSRVFDTPGVLRKHVRTSHITYSCELCEVSKDTKTELFDHVSSDHTNHPDLTCDAPDCNKMFRSSKDCTKHKKDHKYSGNIPPSCAFCGELITNRIKLRKHLRSNHAEKSKYMCSLCAISHLSFNDLQDHIRQNHPSCIGKMYTCQICARKCPTKYKLDTHLKVHGSEFFNCLTCYKVFTDENEFKKHDKVHPQKKLNTPKLEEKIKDSDDESETEEGSKRKRSPESHGEEKLMKLSHNCVCCKLTFGSNDSYDQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -