Basic Information

Insect: Empoasca onukii
Gene Symbol: RREB1
Assembly: GCA_018831715.1
Location: CM032063.1:23615596-23623755[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0035 0.34 12.7 0.5 1 23 96 118 96 118 0.98

2 16 8.7e-05 0.0087 17.7 0.0 1 23 138 160 138 160 0.97

3 16 7.7e-06 0.00077 21.0 2.1 3 23 168 188 166 188 0.98

4 16 2 1.9e+02 4.0 0.1 1 23 277 301 277 301 0.83

5 16 5.2 5.1e+02 2.7 2.8 2 23 307 329 307 330 0.92

6 16 0.082 8.2 8.3 0.3 1 20 382 401 382 403 0.88

7 16 0.14 13 7.7 0.2 1 23 576 598 576 598 0.97

8 16 1.2e-05 0.0012 20.4 2.3 1 23 610 632 610 632 0.99

9 16 0.009 0.9 11.4 4.3 1 23 638 661 638 661 0.97

10 16 0.0012 0.12 14.1 2.8 1 23 1089 1112 1089 1112 0.96

11 16 0.00067 0.066 14.9 0.4 2 23 1357 1378 1356 1378 0.97

12 16 0.24 23 6.9 4.5 1 23 1384 1407 1384 1407 0.97

13 16 0.013 1.3 10.9 4.2 1 23 1446 1470 1446 1471 0.96

14 16 0.35 35 6.4 0.4 1 23 1560 1583 1560 1583 0.95

15 16 0.0058 0.57 12.0 0.5 3 23 1633 1653 1631 1653 0.96

16 16 0.013 1.3 10.8 5.9 1 23 1659 1681 1659 1681 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0035	0.34	12.7	0.5	1	23	96	118	96	118	0.98
2	16	8.7e-05	0.0087	17.7	0.0	1	23	138	160	138	160	0.97
3	16	7.7e-06	0.00077	21.0	2.1	3	23	168	188	166	188	0.98
4	16	2	1.9e+02	4.0	0.1	1	23	277	301	277	301	0.83
5	16	5.2	5.1e+02	2.7	2.8	2	23	307	329	307	330	0.92
6	16	0.082	8.2	8.3	0.3	1	20	382	401	382	403	0.88
7	16	0.14	13	7.7	0.2	1	23	576	598	576	598	0.97
8	16	1.2e-05	0.0012	20.4	2.3	1	23	610	632	610	632	0.99
9	16	0.009	0.9	11.4	4.3	1	23	638	661	638	661	0.97
10	16	0.0012	0.12	14.1	2.8	1	23	1089	1112	1089	1112	0.96
11	16	0.00067	0.066	14.9	0.4	2	23	1357	1378	1356	1378	0.97
12	16	0.24	23	6.9	4.5	1	23	1384	1407	1384	1407	0.97
13	16	0.013	1.3	10.9	4.2	1	23	1446	1470	1446	1471	0.96
14	16	0.35	35	6.4	0.4	1	23	1560	1583	1560	1583	0.95
15	16	0.0058	0.57	12.0	0.5	3	23	1633	1653	1631	1653	0.96
16	16	0.013	1.3	10.8	5.9	1	23	1659	1681	1659	1681	0.98

Sequence Information

Coding Sequence: ATGCAAGACAGAGTCTCTGCCCAGCTGGAACCTCCCCCGGCCCCGCCACATAAGCCACCTTCAAAACCTGAAATGGCTGCTAACTTCGCATCTTCAAGAGATTCTGCTTCACCAGCACAAAAAGTACAATACTTTCATGACACCAAAGACAAGGACCAAACCAAAGAAGCCAGTACtgataaagaaaacaacaaaagtcTAGTCCATCCGAATTCTAAATTAGAGGTTATTGAGAAGAGTGAAGATTTAAGATCAAGGATTACAAAGCAAACCAACGACATTCAATACTCTTGTCCTATATGTGAAGCTGTACTCTTCTCTTCTCATGACTTTACAATTCATCTTCGATCCCACAACAGTCTCCTGGTGAAAGATGGTGTAAGATCGCCCCCGGGGATGCTGGATAAAGGTTTCATATGTCCCGAATGTGGAAAGGTTCTTGGATCAGCGAGTTCACTGGACAGGCATATTCTCGTCCATTCGGGAGAGCGACCCTACGGCTGCAGAATCTGCGGCCTCTCTTTCACAACCAACGGAAACATGCATCGCCACATGAGAACCCACGCTGTTTCTGAAAATGGGGACTATGATAGTGATGCTAGCTCTGACAGCCCCGGGTCCCCTAAAACCTTGTCTCCCTCCTCTTTAGTTAGTTTGAAAAGGAGAAGAATTTCAAGAACAACTTCAGAGTTCAATAATAACATTGTTGATACTGTTTTGCCAGTTACCTCTGGTACTGACTATACCATGAAACGAAAGACCGATTCTGATGATTTACACTCAAACAGAAAGAAAAAATGTGATAGCAGAAAATCTTTCATTGAAAAATATGATTGCCAACGTTGTGACAAGACTGGATTTCCATCTGCAAACCTTCTTGAGATTCACATTGAAGAGTTTCACCCAGAGTGCAAAGCCAAATGTGAACCTTGCAATCTGGTTTTCAAGAATCaccgtgttttaaatttacaccgATACATGGTCCATCATGCTGAAATAAAAGATAACTTTTCAAACTCCAAACAAGAACTTGTAGGTTTCAAAGACTTGACTTTTGTTGACTTCTCCAGTGAAAAGTTTCCTCATATAGCTAGAATAATGTGTGAGCAAAGCTTACATCATGCTAGCAGTTTACACCATAGGTTCCAGTGTGATAAATGTGGTAGAGCATTTCCTTGCGGCTCTGCTCTCAACATTCACCGACAAGGATGTGGTACGGAAAATTATGCTTCATCTGGAGAAAGCTGTCATCAAGATAATGACTTATCATCAAGTGATAACGAAATGCCCACAGATTTAAGTAGTGGAGGGAAAAGGGACTCATGGGGAGAATCTAAAGTTTCTGAAAGTTCTGACGATGTTGAAGAGGAAAGAAAAAGGTCTTCTTATTTCTTTGCATGTCttgatttacaaaacaagtCTCTATCCAACACTCCAAGCCAGATTCAACCTCCtacaaaagacaaaattttaaaagactctttttttagttacaataacaacaattcagAGGGCAAAGATTTAGCCGATATCCAAAGCATAATTTCAGTTACATCTAGTGGAGGCCTACTTCAAGATTTGTCTAAATCACCTCAACCAACAGTTCTAGAAGTTACACCTCCAGACTCAGGCTCCCGATCTGGGCTCTTTGAAAGTGGAGTTACTGATGAAGAACAGCAAGATTGTTTCGCTGCTGAGTTTAGAAAGATGAAGCTAAGGGGTGAATTTCCTTGCAGATTGTGCAGTTCGGTATTTCCCAATTTGCGAGCTTTAAAGGGTCATAACAGAGTGCACTTATCAAGTAACAGTGGACAAAGTTCTTTACCCTACCGATGTAACATGTGCCCACATTTTAGCACTGACAAATCAGCCTTAATCAGGCACATGCGCACACATAACGGTGATCGCCCATATGAATGTGCTCTTTGTCATTACGCTTTCACTACTAAAGCCAATTGTGAACGTCATTTGAGGAACAGGCATTCCAAAATGACCAGAGAAGATGTAAAGAAATCCATCATTTATCATCCTTCAGAAGATCCCACCAACGAAGTGGAACATAAACCTTGCAGGGATGATGTGAAACGTTCCTTATTTGGTGAGAAAGAGATGTCAAAACCATTTGAAAGTAATGAGCACCCTCAGTTGGAAAATATTCAGAGTGTTTCTAAgacttttgttgaaaaaagtCCACTAGTTTTGGAAACTTTGCCTTTGCACACGCCAGTTATTAACCGAATTCATAGAATTTCTTTAACCTCTGATCCCAATAAAAATGAACACAGTCAAATAAAGTGTTCAGATGTTGGAACAATGACTTACGAAGAAAGTGACTCAGTTCACACATTCCAGACATTTACTGACACACCAACTAAATCTGATTCTGATGGAGACACTCCTCTTGATCTGTCCATGGATGTTTTAGACTTaagcaaaaagaaaaacaacacacaaaaagAAAACCAAGAATTTGATATCCTAGCAAGAAGGGAAGTAACAGTTCCTCAAGATCTATCAATAAAATCTGGcgttaaagaaaataaaaatatctatcCTTTGACCGTTGAGGCTTTAGAAAAATCTGAATCGGTTCAAGGCTTGCCAAATGTAAAATACTCTCAAGAAGTGAATACTTCAACAACCTCACCCCCAGGCTACGATAATCAATGTCCGAAATCCCCTAATCCTGAAGCCATACCAAAGATTGATCTAACAAAACTGTATCCTTCAACTATCAATCCCTTTTTCTTAAACAACAATACCCCATTCACTACATTTCCTGCAGCTGCAGTTACTGGCCCATATCCACCTTACTTTATTCCACCACCAGCTCCAATATTGTTCTCAGCTAACCCAAATCAAGACCTTATAGAAATGAAAGAGAGGTTGCAAAAGGAATTGATTAGAGGTCTACAACTAACATCAGGTGGTTCTCTGGTGTTTGATCAAATTTCCATGGTAAGTGCAGCAGATAGGCTTCAAGCACTTCAACACCAAGCCATGGCCGAAATCAACTGGAGAATGGAAAGTAATAAAGAGGAAAGAAAACTGTACTCACCTTCAATAAACAAGGAAGTAAACCATTCACCTACCctagaagaagaaaaagaataCCCCATTCAAGAACAAATCCAGCCTAAAGCTGCTGAAAGAAATTCTCAACCAAAGCCCAAACAAGACAACTCATCATCTGTTAAAATGGTCATCAAAAATGGAGTCTTAATACCCAAACAGAAGCAACGGCGTTATAGAACTGAGAGACCATTTTCATGTGAACACTGCTCAGCGAGGTTCACTCTAAGATCGAACATGGAACGCCATATCAAACAACAACATCCTCAGTTCTGGACACAAAGACAAAGAAATGGAGCTAATATTCCAACCAGGCGAAATACCTCACTTTCCAGTAAAATGCCACAAACTCTATTAAGCAATGGTCAATTCTATCCCCACAGTGGAATTTCTCTGTATAGTGCCAAGTCAGAAGATGACATTTCAAGGTCTTCAAGTACAAACGAGCATGCAgcttctgaaaataaaataaatgtcatgaatgatttcaataaaacttgtatatctGAAGAAGTCAAAAATGCAATCGCACAAcagttgaaaacaaagtttcctACATCAGATGTGTCTCAAAATGAAGAAGATAATGACGATGATTTGATGGATGAAGAAGAAGACGAAGATCTTGTAATAGACGAAGAAGTAAAGGAAGACGAACCTGATGAAATAACTCCTGAAAAACGTGAAAAACCTGAAGAATTTGCAATCCAAAAGAGGTACTCAATGAAGGACGAAAATCAAGATCTAGCAAGTGTTTCTCGACTCCTGGATAATGCATCCACGCAGACATTTCGCCAGTATTTCCACTCAGATGAGGATCAACCAGGAGAAGAGGGCAGTGAGGAAGATGAAGAAGGTCTTGTAGCAGCTGGCAGTACCAGTGAAGGATGCAACTCTGGCAGTGATGAAAATCGTTCTGAATCAGAAAACCATAGTGGAGCAAATTCAACTGCAGTTAAGAAGAAAAGTGCATATTCACTAGCACCAAACAGAGTGTCTTGCCCTTACTGCTCCCGCAAGTTTCCATGGTCTTCATCTCTGAGGAGGCATGTGCTCACCCATACGGGCCAGAAGCCTTACAAATGTTCGTTCTGTCCTCTGCTCTTCACAACCAAGTCCAACTGTGACCGACACTTACTGAGGAAGCATGGAGGAGGGACTCCTGCCCCGTGCCATGACATGCAGACAACCGCCCACAGCGAGACCTCTGCGAACCAGAGTAGTGCCAACAACTACATCATGAGGAATGTTCCTGAAAGGCCTTACAAGTGCAAAAACTGCCCAAGCTCCACATTTTCAACTCTAAGTAACCTGAAGAAACATCTGTCGTCCAAACACCACCTGTCTGAAAAGAACGAGGGAGCACAAAGTGGCTACGAAAGTCAGGGCAGTATGAGTGAAGAAATCGATGTTGGCGAGAATGAACATTGTAAAAATAGTACAGAAACAGAGGTTAAAGAAAAACCTGTCATCAGTGATCCAAGAGAAATCCACCCTAGTCACTTTGTGGATAGTgtgcaattttataaaactcactcgCTGCCAGTAATGTTAGAGTCTAATTTTGTGGCTACCCCAGCTTCCACTCCGGCTTCGGACCTCCCTTTCAAGTGCCATCTTTGTGAAGGTAGCTTCGCTGAGAGGCAGGAAGCTCTGGACCATATTCGAGACAACCATTGTGCTGAGTTTCAACTGCTGGTGTCCAAGGGAGCTCTTGAGGCAAGTGCATCAGCAGACGATCAGCAAGCCCAGGATGAGGGGGGAGAAGAAGGCCTTGAACAGCTCAGGGGCAAATTTCCAGACTATGCTAACCGAAAGGTTATGTGTGCGTTCTGTCTGCGGCGCTTCTGGTCAGCGGAGGATCTGAGACGCCACATGCGCACACACACAGGTGAGCGTCCGTTCTCTTGCGACATTTGCAGACGACGCTTCACTCTCAAACACAGCATGCTGCGTCACCGTAAGAAACACTCGTTCCCCGCCACTGAGGAGACTTCACCAGTCAGTGACGACGATACCAACGTTCCCCCAGCGTCAACCAACCATAACAACAATGTTGTGGCCTCTGCCAAACCGTGGATGAAAGCGCGCCTCGAGGAAGAATCTGATCTGATCAGTAATTTGCTCGGTATCCAAGATAAATCTATCGTTGACAAAATGTTGCTGTCCAAGTCAGCCGATGATGCAGCCAAGCTATTAGGTgtcaaaaagtaa
Protein Sequence: MQDRVSAQLEPPPAPPHKPPSKPEMAANFASSRDSASPAQKVQYFHDTKDKDQTKEASTDKENNKSLVHPNSKLEVIEKSEDLRSRITKQTNDIQYSCPICEAVLFSSHDFTIHLRSHNSLLVKDGVRSPPGMLDKGFICPECGKVLGSASSLDRHILVHSGERPYGCRICGLSFTTNGNMHRHMRTHAVSENGDYDSDASSDSPGSPKTLSPSSLVSLKRRRISRTTSEFNNNIVDTVLPVTSGTDYTMKRKTDSDDLHSNRKKKCDSRKSFIEKYDCQRCDKTGFPSANLLEIHIEEFHPECKAKCEPCNLVFKNHRVLNLHRYMVHHAEIKDNFSNSKQELVGFKDLTFVDFSSEKFPHIARIMCEQSLHHASSLHHRFQCDKCGRAFPCGSALNIHRQGCGTENYASSGESCHQDNDLSSSDNEMPTDLSSGGKRDSWGESKVSESSDDVEEERKRSSYFFACLDLQNKSLSNTPSQIQPPTKDKILKDSFFSYNNNNSEGKDLADIQSIISVTSSGGLLQDLSKSPQPTVLEVTPPDSGSRSGLFESGVTDEEQQDCFAAEFRKMKLRGEFPCRLCSSVFPNLRALKGHNRVHLSSNSGQSSLPYRCNMCPHFSTDKSALIRHMRTHNGDRPYECALCHYAFTTKANCERHLRNRHSKMTREDVKKSIIYHPSEDPTNEVEHKPCRDDVKRSLFGEKEMSKPFESNEHPQLENIQSVSKTFVEKSPLVLETLPLHTPVINRIHRISLTSDPNKNEHSQIKCSDVGTMTYEESDSVHTFQTFTDTPTKSDSDGDTPLDLSMDVLDLSKKKNNTQKENQEFDILARREVTVPQDLSIKSGVKENKNIYPLTVEALEKSESVQGLPNVKYSQEVNTSTTSPPGYDNQCPKSPNPEAIPKIDLTKLYPSTINPFFLNNNTPFTTFPAAAVTGPYPPYFIPPPAPILFSANPNQDLIEMKERLQKELIRGLQLTSGGSLVFDQISMVSAADRLQALQHQAMAEINWRMESNKEERKLYSPSINKEVNHSPTLEEEKEYPIQEQIQPKAAERNSQPKPKQDNSSSVKMVIKNGVLIPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQFWTQRQRNGANIPTRRNTSLSSKMPQTLLSNGQFYPHSGISLYSAKSEDDISRSSSTNEHAASENKINVMNDFNKTCISEEVKNAIAQQLKTKFPTSDVSQNEEDNDDDLMDEEEDEDLVIDEEVKEDEPDEITPEKREKPEEFAIQKRYSMKDENQDLASVSRLLDNASTQTFRQYFHSDEDQPGEEGSEEDEEGLVAAGSTSEGCNSGSDENRSESENHSGANSTAVKKKSAYSLAPNRVSCPYCSRKFPWSSSLRRHVLTHTGQKPYKCSFCPLLFTTKSNCDRHLLRKHGGGTPAPCHDMQTTAHSETSANQSSANNYIMRNVPERPYKCKNCPSSTFSTLSNLKKHLSSKHHLSEKNEGAQSGYESQGSMSEEIDVGENEHCKNSTETEVKEKPVISDPREIHPSHFVDSVQFYKTHSLPVMLESNFVATPASTPASDLPFKCHLCEGSFAERQEALDHIRDNHCAEFQLLVSKGALEASASADDQQAQDEGGEEGLEQLRGKFPDYANRKVMCAFCLRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHSFPATEETSPVSDDDTNVPPASTNHNNNVVASAKPWMKARLEEESDLISNLLGIQDKSIVDKMLLSKSADDAAKLLGVKK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -