Eonu033390.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Empoasca onukii
Gene Symbol
-
Assembly
GCA_018831715.1
Location
CM032065.1:7612793-7633786[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.66 66 5.5 0.5 1 10 329 338 329 349 0.95
2 12 6.5e-06 0.00065 21.2 1.2 1 23 356 380 356 380 0.91
3 12 7.3e-05 0.0073 17.9 0.7 3 23 409 430 407 430 0.95
4 12 7.4e-06 0.00073 21.1 2.7 1 23 436 458 436 458 0.99
5 12 2.4 2.4e+02 3.7 0.9 9 23 514 528 512 528 0.90
6 12 1.9e-05 0.0019 19.8 0.4 1 23 534 556 534 556 0.98
7 12 0.00041 0.041 15.6 6.6 1 23 562 584 562 584 0.98
8 12 4.7e-07 4.6e-05 24.8 1.8 1 23 590 612 590 612 0.99
9 12 1.6e-05 0.0016 20.0 4.0 1 23 618 640 618 640 0.98
10 12 0.27 26 6.7 4.9 2 23 647 668 646 668 0.97
11 12 2.6e-05 0.0026 19.4 0.3 1 23 674 698 674 698 0.98
12 12 3.5e-06 0.00034 22.1 2.4 1 23 704 726 704 726 0.98

Sequence Information

Coding Sequence
ATGGAAATGGAAGTTGATCTGTATCTTTCAACAATTTGTAGATTATGTGCAGATAATAATCCCAACGGAGTTctattattttcagaaaattccCCTGATGGAGATCTTAGTACGTACATCAACACATATCTTCCATTCAagGTGCACAATGATGGGAAGCTGCCTCAAACAGTTTGTCCGGGCTGTAACATCCAACTGCAAGCAACTGTGCAGTTTTTCGACCTTGTTATTGAGGGTCAAAGAAAAATACGAGACATGTGGAAAGAACAGGTAGTTCAcaaaagaaaattggaaaaGCAAGGGATCAGTAAAGTATCACTTTCTCCTGACATGCCACCTCCTCTGATTGTGAGTGAATCCGATAGCATAAGCTTCAACAATGCTACCATTCCAACTCAAGAAGAAGGAGTTCATGACGTTGACGAAGAAGCAATTGTCAAGGGCTTGCTTCAGGAAgttgaaaatcaacttagtaTCGAAGTATTTGATACTGGAAGTATGTACGCTGCTGACGACCCTATAATTCTGAGAGCTGAAGGGTTAGATAAACCAAGAAAGAAGAGAGGTCGGCCGAAGAAAGTGGTTCTACCTGAACTGGAAGTTTTGACTGATAACGCAATAAGTAACAATTTAGATGCTACAAACGGTGATTGTGCCAAAAAGGATGAAAGTACTGATAAAGAAGAGGAACTAGATGGGAGGAGACGTCGCAAAAGAAGAGTACCTCAAAGaTACAAGGAAGCTGTGCAAGGAAAAGAACTGGAAAGGATTTTTAAGGAAGAAGGCGTAATTGATGAAGAAGAAGAGAAGGAGCCAATTATGGAATTGGTGGAGTGTGAACTCCCGACTGTGGAAATTGTTCCAGAGCCTATTAAAGAAGTTATTGGACGTCTGGAAACTCAAGAAGGTCAAGATCTTGGGGAAGTagtgattgtaaataaaatcaaagcAAGAAGAAAATATCCACTCCTCAAAAAAGTACGGTTCCAATGTGAAATTTGTGGAAGAGGCTTCCTTCATCACGGTCGCTACATGTTCCATAAatcaatCCATAAAGGAGTTAAATTTGAATGCACCACTTGCACAAAAAGGTTTTCAACCAAAGAAAACTTGGAGCTGCACCAAAAGATATCTGGGCATTCTGGCGAAGaaattaTAGAAAGTATAGATGATGATAACAACGAAGGAAATACGGAAGACCTCAGAGTTGCGGGAGATATAAACTGCAAATATTGTGAGAAAACCTTCTCCTCTAAAAGAGCGTATGAGAATCATCTAGTCACCGATCACCAAGAATCAAAGCCTTACCAGTGTGAAGTCTGCCAGAAGAGTTTCAGCCATCTAGTAACATTGAAGAGTCACCTGTCAACCCACGAAGAGTGTCTTCACCATCAGAGCTTTGTTATGTTGGCAGATGGGCAAGGAGAAAGGATACCCGTGCAACCTGTGCGGCAAGAAGCTGAATCACCCAAGTTCTGTGCTTTACCACAGAGAAGCAGAACACAACAACGGGCCCATCGCCTGCAACAAGTGTGGCAAGAGTTTCAAcacaaacagctgttgcagAGGCATCAGCTGGTACATTCGGATAACAGGCCGTTCCAATGTGCGCTGTGCACAGCCAGTTTCAAGACCAAGGCTAACCTGCTGAACCATCAAGCAACGCACACCGGGGAGAAGAAACACAAGTGTGAACATTGCGGACAACAGTTCGCTCACAAGACCAGTCTCACGCTTCACTACAGGTGGCACTCAGGTCAGAAGCCGTACCAGTGCACCGTGTGCAAGAAGCAGTTCTCTCAGAAAGGAAACCTCCAGGAACACTACAGAATACACACTGGCGAGAAACCGTTCAACTGTAACGTCTGCAGTCGCAAGTTCACCACTTCCTCTCAGTACAAACTGCACATGAAGAGGCACACGGGTGAGCGGCCGTGGAAGTGCGAGTACTGCAGCAAGTCGTTCCTGCACAAGGACGCGTGGAAGTGCCACATCCGACGTCACCGAGGCGAGAGACCCTTCCAGTGCCCTATCAACTCGTGCAACAAGGAGTTCCCCGAGCAGTGGGCACTCAAGAAACACATGCGCAGTCATACAGGTGAAAAACCGTATTCCTGTTTAATATGTGGCAAACAATTTGCTGACTGCTCAAACCTCACCAAGCACAAAAAGGTTCACGTAAGGGAGGCGAAAATCGAGGAGGAGCGCGTAGAGTTGCGAGTTTGGAACATCATCAAGTCTCACCTAGAGGAGAGTGCAGCTGCTATTGAAGAGAAAGAACTGATGAAACCCAGCGACGATGTGCAACAAATCATCTACGTCACTTACCAACAAGAGGAGGAGGAATCAGAAGTCGTCAGCATTAAGACGACTCGTTGGCACTTCGCTCCTCAACCCCTGCAAGTGACGGATGACCAAGGAAACCCCATCCACTTCACCATGCAGGACGGCAGCTCATTGCAAATAACAACAACTGACGGTCAGAATCTGCACGTGACGACCAAGGACGGCCAGGTGATACCAGTGCAGATAACGACGTCAGACGGGCAGCCAATCAACACCGCGCCACTAGAACTGCCCGAGGAACAAGTGATAGATCAAGATATCAACTCAGAGGACACGATGCCAACTTTGGAGTTCACTGCGGCAGACGGACAGAAGTACAAGATCATCTCTCCCTACGACGGGAGGAACTGTGATGTGCTGTGCGATGTCACAGAGGCTTCCATGGATCAAGAGTATCTCGGGATGGGTTAA
Protein Sequence
MEMEVDLYLSTICRLCADNNPNGVLLFSENSPDGDLSTYINTYLPFKVHNDGKLPQTVCPGCNIQLQATVQFFDLVIEGQRKIRDMWKEQVVHKRKLEKQGISKVSLSPDMPPPLIVSESDSISFNNATIPTQEEGVHDVDEEAIVKGLLQEVENQLSIEVFDTGSMYAADDPIILRAEGLDKPRKKRGRPKKVVLPELEVLTDNAISNNLDATNGDCAKKDESTDKEEELDGRRRRKRRVPQRYKEAVQGKELERIFKEEGVIDEEEEKEPIMELVECELPTVEIVPEPIKEVIGRLETQEGQDLGEVVIVNKIKARRKYPLLKKVRFQCEICGRGFLHHGRYMFHKSIHKGVKFECTTCTKRFSTKENLELHQKISGHSGEEIIESIDDDNNEGNTEDLRVAGDINCKYCEKTFSSKRAYENHLVTDHQESKPYQCEVCQKSFSHLVTLKSHLSTHEECLHHQSFVMLADGQGERIPVQPVRQEAESPKFCALPQRSRTQQRAHRLQQVWQEFQHKQLLQRHQLVHSDNRPFQCALCTASFKTKANLLNHQATHTGEKKHKCEHCGQQFAHKTSLTLHYRWHSGQKPYQCTVCKKQFSQKGNLQEHYRIHTGEKPFNCNVCSRKFTTSSQYKLHMKRHTGERPWKCEYCSKSFLHKDAWKCHIRRHRGERPFQCPINSCNKEFPEQWALKKHMRSHTGEKPYSCLICGKQFADCSNLTKHKKVHVREAKIEEERVELRVWNIIKSHLEESAAAIEEKELMKPSDDVQQIIYVTYQQEEEESEVVSIKTTRWHFAPQPLQVTDDQGNPIHFTMQDGSSLQITTTDGQNLHVTTKDGQVIPVQITTSDGQPINTAPLELPEEQVIDQDINSEDTMPTLEFTAADGQKYKIISPYDGRNCDVLCDVTEASMDQEYLGMG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-