Basic Information

Insect: Empoasca onukii
Gene Symbol: -
Assembly: GCA_018831715.1
Location: CM032067.1:21356070-21364401[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.045 4.5 9.2 1.4 1 23 110 132 110 132 0.98

2 13 3.2e-05 0.0032 19.1 1.9 1 23 138 160 138 160 0.99

3 13 0.0037 0.37 12.6 1.9 1 20 198 217 198 219 0.95

4 13 0.16 16 7.4 3.5 1 23 231 253 231 253 0.96

5 13 4.3e-05 0.0043 18.7 1.3 1 23 259 281 259 281 0.98

6 13 0.00014 0.014 17.0 3.7 1 23 287 309 287 309 0.99

7 13 4e-07 4e-05 25.1 0.2 1 23 336 358 336 358 0.98

8 13 4.2e-05 0.0042 18.7 4.0 1 23 364 386 364 386 0.99

9 13 5.1e-07 5e-05 24.7 2.1 1 23 392 414 392 414 0.99

10 13 0.0055 0.55 12.0 3.2 1 23 420 442 420 442 0.98

11 13 5.8e-05 0.0057 18.3 0.5 1 23 476 498 476 498 0.99

12 13 1.8e-07 1.8e-05 26.2 0.4 1 23 504 526 504 526 0.98

13 13 5.3 5.3e+02 2.6 8.3 1 23 532 554 532 554 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.045	4.5	9.2	1.4	1	23	110	132	110	132	0.98
2	13	3.2e-05	0.0032	19.1	1.9	1	23	138	160	138	160	0.99
3	13	0.0037	0.37	12.6	1.9	1	20	198	217	198	219	0.95
4	13	0.16	16	7.4	3.5	1	23	231	253	231	253	0.96
5	13	4.3e-05	0.0043	18.7	1.3	1	23	259	281	259	281	0.98
6	13	0.00014	0.014	17.0	3.7	1	23	287	309	287	309	0.99
7	13	4e-07	4e-05	25.1	0.2	1	23	336	358	336	358	0.98
8	13	4.2e-05	0.0042	18.7	4.0	1	23	364	386	364	386	0.99
9	13	5.1e-07	5e-05	24.7	2.1	1	23	392	414	392	414	0.99
10	13	0.0055	0.55	12.0	3.2	1	23	420	442	420	442	0.98
11	13	5.8e-05	0.0057	18.3	0.5	1	23	476	498	476	498	0.99
12	13	1.8e-07	1.8e-05	26.2	0.4	1	23	504	526	504	526	0.98
13	13	5.3	5.3e+02	2.6	8.3	1	23	532	554	532	554	0.97

Sequence Information

Coding Sequence: ATGGCAATGGAGCCAGAGTTTGTAGACTGCTCGGGCACCTGGGCTGTGAAAACAGAACCTGAGAAAGTTATTGAAGAAGCACATGAAATAAAGAGAGAAATAGATGAAGATCCGGATGGTGTAAACAACTTGAATCCCTTCGACCTGCTTGAAACCAGCATATCCTCGGTTCACTGCGGGGAAAAACAAGAGCAGCCAAGTTCAGGAGCTGAAGATCCAACAGCCGAACCAGGATTTGTGGGAGAAAATCAGGATTCACAGAACATCGAGGAGACAGAAGACGACCAGAGACAACCGCTCCAACAAGTCGTAAACCGATACAATGTGTACAAATGTACAAAGTGCAGCTACTCAAGTATATCTGTCAATGGTATGAAGACTCACTTGAAGCTACACAGTCCAGTGAGAGCGTTTAAATGTGAACTTTGCAACAAGTTATTCACTCAGTATAAAAGTCTAGAAGAACACAGACGTATTCACGTAGTTGAAGAAGATTCACGGAGTTTTCTCAGGACAAGTGATGTTCCGGGGAAACCAGACAGAAATAATCACTCGGAAGAGGACACGGTTAGTCCTACGGGAGTGAAAGCGTTCAAGTGTCAAATATGCAGTGAGCGGTTCACACAATTCAACGCTTTAGTGAAACACAAATGTGCTCGATCATCGGAGAAGATCCAGGAAAAGAAACAGTTCAATTGTACACAATGTAATTACAGTACTGTACATCCCAATCGGTTTGAGAGGCACTCAGAAAAGCACACGAGGAAAAAAACATTCAAGTGTGATATTTGCAACAAGGTGTTAAGTCGAGCCTACAGGCTCAATCAACACAAACGTCTTCACGCTGGGGAGAAACCTTTCCAATGTGACGTTTGTAACGAGACGTTCGCTCGGTCTAAATGTCTTTTCTTACACAAACAAACCCACCCGCAGAAAACACCCTTTAAGTGTGCTCTGTTCTTTTATCTCGGTAAGGTGAAACAGCCGACCAAAGCGAGGAAATCCTTCATGTGCGAAGTGTGTGGTAAAATGTTCGCTAGCCCGAGTTTACTCCGTATACACAAACGGAGCCACACCGGGGAAAAGCCGTTTAAATGTACTCAGTGTGGTTACTCCTGTACTGATTCCTACAGGCTGAAGAATCACGTCAGGATACACAGCAAAGAGAGAGCGTACAAGTGTGATTTGTGCGACAAAACTTTCGTGCAATCGAGCAATCTGTACATGCACAAACGCAGTCACACCGGTATCAGACCGCACAAGTGTAGCGTTTGTACGTTCGCCGCCAACAGCAAGAACGACCTGAGGAGGCATATGTTCAAACACTCGGGAGAAAGGAATCGTCACCAATGCGAGATATGTTACAAGTTCATCTCATTCGCTAGTATTTATTCGCACAAACTCGTCCACAGCGAGGAGAGGCCGTACAAGTGTTCAGAGTGTAGTTACGCCGCCAAGACACCCAAGGGACTCAAGACGCACATGCTCACGCACACGAGAGAGAGagctttcaagtgtgaagtttGTGACAAGGCGTTCGCGCAGGCCGCCCATCTGCAAACCCACATGAGCGTTCACACGGGTGTGAAACCGTTCAAGTGCACCGAGTGTTCGTACGGATGTCATTGCCAGAAAGATCTCCGGAATCACATGTCTCTTCACGCACGAGGGTAG
Protein Sequence: MAMEPEFVDCSGTWAVKTEPEKVIEEAHEIKREIDEDPDGVNNLNPFDLLETSISSVHCGEKQEQPSSGAEDPTAEPGFVGENQDSQNIEETEDDQRQPLQQVVNRYNVYKCTKCSYSSISVNGMKTHLKLHSPVRAFKCELCNKLFTQYKSLEEHRRIHVVEEDSRSFLRTSDVPGKPDRNNHSEEDTVSPTGVKAFKCQICSERFTQFNALVKHKCARSSEKIQEKKQFNCTQCNYSTVHPNRFERHSEKHTRKKTFKCDICNKVLSRAYRLNQHKRLHAGEKPFQCDVCNETFARSKCLFLHKQTHPQKTPFKCALFFYLGKVKQPTKARKSFMCEVCGKMFASPSLLRIHKRSHTGEKPFKCTQCGYSCTDSYRLKNHVRIHSKERAYKCDLCDKTFVQSSNLYMHKRSHTGIRPHKCSVCTFAANSKNDLRRHMFKHSGERNRHQCEICYKFISFASIYSHKLVHSEERPYKCSECSYAAKTPKGLKTHMLTHTRERAFKCEVCDKAFAQAAHLQTHMSVHTGVKPFKCTECSYGCHCQKDLRNHMSLHARG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -