Eonu005776.1
Basic Information
- Insect
- Empoasca onukii
- Gene Symbol
- -
- Assembly
- GCA_018831715.1
- Location
- CM032059.1:726153-734578[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.3e-05 0.0013 20.3 3.0 1 23 156 178 156 178 0.98 2 14 0.0001 0.01 17.5 0.4 3 23 186 206 185 206 0.99 3 14 0.00021 0.021 16.5 0.2 1 23 313 335 313 335 0.98 4 14 0.57 57 5.7 0.8 1 20 341 360 341 364 0.85 5 14 0.0017 0.17 13.6 3.9 1 21 392 412 392 414 0.94 6 14 0.00045 0.045 15.4 0.8 1 23 429 451 429 451 0.97 7 14 4.8e-05 0.0048 18.5 0.2 1 23 458 481 458 481 0.97 8 14 0.16 16 7.4 0.8 2 17 489 504 489 505 0.90 9 14 1.9 1.8e+02 4.1 3.0 1 23 516 538 516 538 0.94 10 14 0.0055 0.55 12.0 0.2 2 23 544 565 543 565 0.96 11 14 0.00078 0.077 14.7 1.0 1 19 575 593 575 594 0.94 12 14 1.2e-05 0.0012 20.4 0.2 1 23 596 618 596 619 0.96 13 14 7e-05 0.007 18.0 1.0 1 23 630 652 630 652 0.96 14 14 0.00077 0.076 14.7 0.0 2 23 943 964 942 964 0.97
Sequence Information
- Coding Sequence
- ATGGCGGTGGTAGTGAAGCACAGCCAGGACGACACAGAGTTGATCTGTGGAGTGAGCAATGACTGTGTCATGTTAGAGCCGGCTAAACTCGAGTCCGAGCCTGTCAACTACATCAGTGTGCAGAATGGCATGTACGAGGCTGACCTGTACACAGAGCCCACGTACCAGACACTCTCTTCGTACCCCCCACGGAACACTGGTGAGCTGGACATGGAAGTGACGGAAGAGGTGGCTGAGAGAGCAAATACAGAGATCAGTGACCACTCGTCCTCCACGCTGTCCGTGCCTGTGCAAGACTACTATGAGATACAAGTGGCAGAGGAGGAAGTGGTCAGCGACAACTGGGGGGTCGACCATACAGAAGTCGTGGTGGAGAACTCCAAACCGATAAAAGTGGAGAAGATCGAAGATGACTTGGAGATTCCTCTGCCGGAGAACCAGGACATGTACTCACACTTGCATCCCTACCCTTGCGACTTCTGTAGCCGACGCTTCAGTCATAAGTCCAGTCTCATGAGTCACATGATTTCACACCAGACCGAGCGTCCTCACGGATGCAACCTGTGCGGCGCGCGCTACCGGCGCAAGAACGACCTGGTGAACCACATGAAGATCCACGCGCTGCCGCCAGTGCGCAACCATCTGGACGAGGAGGGGGGAGGAGGCGATCATGCCAAAACAGGCGCAAGAAAGCGCAGTCGCTTGCGCCCAAGCGCAACAGCTTCAGCAGCAGCGAGTTCAATGAGTTCCTCGAGTTCAAAGAGGACAAAAAACCATGTAAcaaAGAATCGACTGTTGAAGAAAGGTCACAAGAGTTTGCCGGGCAAGATGAAGTCTCACATTGACGATGACTTGAGAATGTTGGCAGAATTGTCTCGTAACTCTGATTTGCTGAGTCAGGAGCCACGGTGGCCTGTCATCGACCAGTCTCGACCCTACGTGTGCCAGCACTGCGGGGTCGGCTTCGCTAGGGAGAAGGCGCTAGCGTCTCACTCGCGTATCCATGGTGGAGACTCTCCGTTTGAGTGCACAGTATGCGGTGAGATGTTCTGGAGTGTGGTGTTGCTGCGAGAACACTCTCGCTGTAAACACCCGCACCTGGAGACAAGTTCCAGCCCGGCCGACCCGGTCACTCCCACCGATGAGTACCCGGGCGACGACCAGTTCGGGACCTTCTTCTGCGAGACTTGCGGCATCTCCTTCTACCGCCTAGACCTACTCCGCAAACACCGCAGGTGTCACTTCAAGATAGAGGAGCCGCTGCAGGAAGTGGGGGATGACGATCACGTGTGCATGGTGTGTGGCCAGTTCTTCGAGAATGTGTCAGAGTTGCGCTCACACACCGAGACACACCTGGACTCAGCTGAGACACACCGGTGCGTCGTGTGTGGCGTCACCTTTACGGACGCCGGAGAGCTGAGTGAACACGTGCGCACCAATCATACAGACCTGGCCACCGACAACACCTGCACTCTCTGTGGCAAGGTGTGCAAGGACCGGCGAGCCCTGGCCAAGCAAGCGTGTATGTCAGCAGAGAATCGCAGCTTCCCGTGCTACTCGTGCAACAAGCGCTTCCACAGTCGCGCCCGACCCCGGAGACACATGGTGTCACACCGGGACAAGGCAGTCTCGTGTTCAGACTGTGGAGAGGAGTTCCCGGACGGACGAGCGTTGATGAGTCACAGACACAGTCACAACTCCAACAATCACCCTGCTCGCAGCTTCCCTTGTCACGACTGCGGCAAAACCTTTGGATCTCGCAGCTCGCAGCAGATTCACAAGCCCTACGTGTGTCCTGTCTGTCCTAAAGCCTTCAACCAGCGGgtggTGTTGAGGGAACATatccgagctcatcactctggctCAGACTCTAAGGTGAACTCATGTTACGAGTGTAAAGTGTGCGGCTATCTCTTCTCCTCCTCCAGCGAACTCTGTGTGCACCTGgTTCAACACAGTGATGAGAACACAGCCAAACATCGTTTGCCAAACATGGGACCAAGAAAGTACAAACGACGCCGCAAACTTGGTGTCCCCGCCCCCAAAGCTCCCCCCTCCCCGCCTCGAGACTTTGAGTCGACGGATTCCAGCGACTCCATGATCGAGTCCAAACCTGCGAAGAAGATAATCAAGAAGAAGTTCAGCTACGATTCACCATCACCTAACCGAGAACTGGAGCGCAGTGTCGTCGAGTCTTTCGAGAGTGCAATTGACAGCATCCAATCCATCGTCAAGAGTGAGCCCAAGAAatcaaaaattgacaaattgaTGATGAAGAAACACAAGACGAAAGCTCTGTCAAAACTGAGCAAGTTGGCTCGCATCGAGAAGCGAGCGAAAGCGGCAAAACTGCTGAACAACACGAGTTACGCCTCTAAGTACGTAGTGTCTCGACCAGAGGAGAAGCTGTTGGACGCCCAGCGGCCACGGACAAAAAATGTCACCTATCCGAGCCTAGAAGACAGTCTGGAGACGATACTCAACGGATCGGACGCGTTCCTTAACCGACCGCGCACAAAGAATGTAAACTATCACAACCTGAAACCAACCAAACTGGAGCCGGCGACGTTCCCACTGAGAGGATCTAAGAAGAAGACACGAGAGAACAAGAAGAGAACGTATGTGAAGAAGGAGAAGCACGCTAGGAGCAGAAGCGGAGAGGAGGTGAACGGCGTGGAGGAGAGTTATGTGAGTGAGGAGAAGCTAGAGACGTGCATCGTGGACGACTTCAACATTGAGGGAGTACATGCTGAAGTCAAGCCGGAGGACATGCCTCTCCTGATGGAGCAGAAGATGGAGTCAGTGGTGATCAAGTCGGAGATACTCACGTGTGAGATGTGTGGCGATGGGTTCGCAGATCGTGCAGAACTTCTGGCACACATTCGCGTGCACATATAG
- Protein Sequence
- MAVVVKHSQDDTELICGVSNDCVMLEPAKLESEPVNYISVQNGMYEADLYTEPTYQTLSSYPPRNTGELDMEVTEEVAERANTEISDHSSSTLSVPVQDYYEIQVAEEEVVSDNWGVDHTEVVVENSKPIKVEKIEDDLEIPLPENQDMYSHLHPYPCDFCSRRFSHKSSLMSHMISHQTERPHGCNLCGARYRRKNDLVNHMKIHALPPVRNHLDEEGGGGDHAKTGARKRSRLRPSATASAAASSMSSSSSKRTKNHVTKNRLLKKGHKSLPGKMKSHIDDDLRMLAELSRNSDLLSQEPRWPVIDQSRPYVCQHCGVGFAREKALASHSRIHGGDSPFECTVCGEMFWSVVLLREHSRCKHPHLETSSSPADPVTPTDEYPGDDQFGTFFCETCGISFYRLDLLRKHRRCHFKIEEPLQEVGDDDHVCMVCGQFFENVSELRSHTETHLDSAETHRCVVCGVTFTDAGELSEHVRTNHTDLATDNTCTLCGKVCKDRRALAKQACMSAENRSFPCYSCNKRFHSRARPRRHMVSHRDKAVSCSDCGEEFPDGRALMSHRHSHNSNNHPARSFPCHDCGKTFGSRSSQQIHKPYVCPVCPKAFNQRVVLREHIRAHHSGSDSKVNSCYECKVCGYLFSSSSELCVHLVQHSDENTAKHRLPNMGPRKYKRRRKLGVPAPKAPPSPPRDFESTDSSDSMIESKPAKKIIKKKFSYDSPSPNRELERSVVESFESAIDSIQSIVKSEPKKSKIDKLMMKKHKTKALSKLSKLARIEKRAKAAKLLNNTSYASKYVVSRPEEKLLDAQRPRTKNVTYPSLEDSLETILNGSDAFLNRPRTKNVNYHNLKPTKLEPATFPLRGSKKKTRENKKRTYVKKEKHARSRSGEEVNGVEESYVSEEKLETCIVDDFNIEGVHAEVKPEDMPLLMEQKMESVVIKSEILTCEMCGDGFADRAELLAHIRVHI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -