Basic Information

Insect: Empoasca onukii
Gene Symbol: -
Assembly: GCA_018831715.1
Location: CM032063.1:6977516-6982716[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.8e-05 0.0068 18.0 0.9 2 23 214 235 213 235 0.96

2 11 1.4e-06 0.00014 23.4 5.9 1 23 240 262 240 262 0.99

3 11 2.6e-08 2.6e-06 28.8 0.2 1 23 268 291 268 291 0.97

4 11 9.4e-05 0.0094 17.6 2.6 1 23 297 319 297 319 0.97

5 11 2.2e-06 0.00022 22.7 1.7 1 23 325 347 325 347 0.95

6 11 5.5e-07 5.5e-05 24.6 0.4 1 23 353 375 353 376 0.96

7 11 0.00066 0.066 14.9 0.7 2 23 383 405 382 405 0.95

8 11 0.00065 0.064 15.0 0.8 3 20 414 431 412 434 0.92

9 11 0.00097 0.096 14.4 2.8 1 23 471 493 471 493 0.93

10 11 1.8e-06 0.00018 23.0 2.2 1 23 499 521 499 521 0.97

11 11 0.057 5.6 8.8 0.3 1 11 527 537 527 548 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.8e-05	0.0068	18.0	0.9	2	23	214	235	213	235	0.96
2	11	1.4e-06	0.00014	23.4	5.9	1	23	240	262	240	262	0.99
3	11	2.6e-08	2.6e-06	28.8	0.2	1	23	268	291	268	291	0.97
4	11	9.4e-05	0.0094	17.6	2.6	1	23	297	319	297	319	0.97
5	11	2.2e-06	0.00022	22.7	1.7	1	23	325	347	325	347	0.95
6	11	5.5e-07	5.5e-05	24.6	0.4	1	23	353	375	353	376	0.96
7	11	0.00066	0.066	14.9	0.7	2	23	383	405	382	405	0.95
8	11	0.00065	0.064	15.0	0.8	3	20	414	431	412	434	0.92
9	11	0.00097	0.096	14.4	2.8	1	23	471	493	471	493	0.93
10	11	1.8e-06	0.00018	23.0	2.2	1	23	499	521	499	521	0.97
11	11	0.057	5.6	8.8	0.3	1	11	527	537	527	548	0.86

Sequence Information

Coding Sequence: ATGCAGATTGCCAATGTTCAGAATTCAGCGTTTCTGTCAGAGGGACTGTGGAGTGAGAATGTTTCGACCCAGTTTGTCTCAGTTCCAACCAACTGTGAGGATTTGTCAAATGCGGCTCCTCAGGAAGTGACAGGTGTGTTGAACGAAGAGCCGCAACCGACCGTGTTTGTTAGTTTACCGGACGAGGAGGACAAGTCGTTACTAGATCTCACCCAGCATGAAGGCAAAAAAACAACAAGTCACTCTGACGAATCTCAAGCTGAAACTCAGATTGCAAATAACAATGACTCTGGAATAGATACAGGACGTAACTTTCGAGAAGAAGCTTCgatattgttaaacaaacacGATGTcagttattatgaaaataactttttcaaccACACTCAACCTTTAAATGTAGGCAGTTTGGACCCAGACAAGGACAGGAACTATTACAGTTTGAATTTAATCAAAGAAAGTGCGCCTGGGAATAATATTTCAGGTGAATCAACTGTCGTTGAAAAAGAACACGAAGAGGATTGTACCACTAACGAGTGTGAAGATGAAGGAGTAGAAGAAGAGGTAGAAGAATCTAAAATTGAAGAGTGTTCAACAAATGAGAGTTCTCATAAAGAAcccaatgttttgaaaataacttattgCGAAGAATGTGACAAACACTTTGAAGAACCTGTGAGTTTGAAGAAACACCAAGCTTCACATTTAAAAGAGgcttacaaatgtacattttgcaataaaactttCAAGCACAGCTGGTATTTGCAGTCTCACATAAGAACTCACACGGGTGAACGTCCGTTTGTGTGTACCATTTGCTCGAAAACATTCACGGATAGAAGTGCACTCAACGCTCACATGAGGATTGCACATTTCATGGAGAAAACGCACATTTGCAGTTATTGTGATAAAGGTTTCAAGCTGAAGAAACAGCTGGACAGACACGAGCGGATTCACACAGGTCATCAGTACCATCGGTGTGAGGTTTGTGGCAAACTCTTCACGCAGAAAAGTAACTTGATGAAACATCTCGTTCTTCATTCCGGGGAGAAGCCGTATCCGTGTCCGGTTTGCAAGAAACCTTTCGCACAGAAAGATAACTTGAACATTCATGTTCTCAGACACCACTCGCAGCAGAACCCGATCATGTGTGATGTCTGTGGAAAACTGTTCAAGAATAAAGTAACCCTGATGGGGCACAAGAAGTCGAAACATTCGGAAAGTACGAAGCAGATAATCTGTGAAGTGTGTGGCAAGTTCTTCCCGGACAGGAGCTGTCTGAACTCTCACAAGTGGGTGCACTCTGCGGGGACTCCAGTGCCTTGCGACCAGTGTGGCAAGGAGTACCCGCACGGACGCACGCAAGCTATGAGAGTGCACAAGCGCATCGTGCACTCGGAGGTGCGCAAGTTCTGCTGTGACGTCTGCGGTGTCGCCTTCAAGACCAGCCAGACGTTGAAACACCATTCCGTCGTACACACGGGAGAGCGAGCATTCTGTTGTGAGGAGTGCGGTCGCTCCTTCGGACAGAAAACTGCCCTCAAGACTCACCAACGTATTCACTCCGGAGTCGAACCTTACTCTTGTCCTCAATGTGGTGAGTCGTTCAAGTGGAAACAAACTCGTGATAAACACGCTCTTAAATGCGATGGCAAAATTTGTCATGACTTTTTGGTTATTTCAGAGTCTAACAACAGTCAAAGTATGTCGTGA
Protein Sequence: MQIANVQNSAFLSEGLWSENVSTQFVSVPTNCEDLSNAAPQEVTGVLNEEPQPTVFVSLPDEEDKSLLDLTQHEGKKTTSHSDESQAETQIANNNDSGIDTGRNFREEASILLNKHDVSYYENNFFNHTQPLNVGSLDPDKDRNYYSLNLIKESAPGNNISGESTVVEKEHEEDCTTNECEDEGVEEEVEESKIEECSTNESSHKEPNVLKITYCEECDKHFEEPVSLKKHQASHLKEAYKCTFCNKTFKHSWYLQSHIRTHTGERPFVCTICSKTFTDRSALNAHMRIAHFMEKTHICSYCDKGFKLKKQLDRHERIHTGHQYHRCEVCGKLFTQKSNLMKHLVLHSGEKPYPCPVCKKPFAQKDNLNIHVLRHHSQQNPIMCDVCGKLFKNKVTLMGHKKSKHSESTKQIICEVCGKFFPDRSCLNSHKWVHSAGTPVPCDQCGKEYPHGRTQAMRVHKRIVHSEVRKFCCDVCGVAFKTSQTLKHHSVVHTGERAFCCEECGRSFGQKTALKTHQRIHSGVEPYSCPQCGESFKWKQTRDKHALKCDGKICHDFLVISESNNSQSMS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -