Eonu006078.1
Basic Information
- Insect
- Empoasca onukii
- Gene Symbol
- ZNF236
- Assembly
- GCA_018831715.1
- Location
- CM032059.1:4521619-4544208[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00027 0.027 16.1 2.1 1 23 229 251 229 251 0.98 2 15 2.7e-05 0.0027 19.3 0.4 1 23 257 279 257 279 0.98 3 15 2.2e-05 0.0021 19.6 0.5 2 23 285 306 285 306 0.98 4 15 0.026 2.5 9.9 0.1 3 23 314 334 312 334 0.96 5 15 0.00055 0.055 15.2 0.4 1 23 346 368 346 368 0.97 6 15 4.6e-05 0.0045 18.6 4.7 1 23 391 413 391 413 0.97 7 15 4.8e-06 0.00048 21.7 0.8 1 23 419 442 419 442 0.97 8 15 6.3e-05 0.0063 18.1 0.6 1 23 448 471 448 471 0.94 9 15 0.00027 0.027 16.2 2.4 1 23 481 504 481 504 0.98 10 15 1e-06 0.0001 23.8 2.3 1 23 582 604 582 604 0.98 11 15 0.0053 0.52 12.1 1.3 1 20 636 655 636 656 0.95 12 15 1.7e-05 0.0016 20.0 4.0 1 23 786 808 786 808 0.98 13 15 4.4e-05 0.0044 18.6 1.1 1 23 814 836 814 836 0.99 14 15 0.00059 0.058 15.1 1.8 1 23 843 865 843 865 0.95 15 15 0.00043 0.043 15.5 3.8 1 23 871 894 871 894 0.98
Sequence Information
- Coding Sequence
- ATGGATAATCACGAAGAAGTTGGGTTCATGGACACTCAAATCGTCACTTTTCCAAGTGAAATCTACAACTCCAACGGTTACTATTTTACCTCTGATGGAACTGCGACTGTGCTGGGTGCTAATGATGGATTGGGCATCGGGGAAATTAACATGAACTTACCAGTCATCACGATTCCTGTACAATTCATTCCTGACAATACACAGATACAACAACAGGTTTTAAACCCTGAAATCGTTACTCCAGTACCAACCACCATCTATATTGATCCCAGTCAGCTTGCGTTTTTTAACGGAGGTCAGCTGATGATCACCGAAGATGGACTTCTGACAACATCGGCAACACTCTCGTCGGACCAGCTGACTCAGAATAAAGTTGATGAAggaacatatttaaatgtttccGAAACCCCCCAGAATATTCAAGATCAAATAAGCGAGTTCGAGCTATGTATGGAAACGGCGGAGGAGCTCATGTTAGAAGACTCGGCGGAGATGAACAACGTGTTGAATGCTACTCGAGCACAAATTGCAGCGCAAGCACTGCAGGTCGCCTCGAGCAGCGTGTTGGAGGAGCCGGTAGCTGCAGCGCCGCAGCAGGCAGTGTTACAGGAGGAAGCAGCTGAGGAACTGGAGCCTGCGGTCAGCAAGGATGCCGAGGTTCAGCCTCCGATAAGAAAAGGTCCGTTCAAGTGTGAAGTTTGCTCGAAGGAGTTCCCGGCGCACTATCAGTACAGGAAACACATGCTAGTGCACGCAGACGACAAGCCGCACAAGTGCAGCGGTTGTTCAGCCTCTTTCAACAATCCGGATAACCTAGTGCTGCACCAGGCGACGCACCAGGTGGAAGACCCGCAGTGTCCGATGTGCAACAAGAAGTTCAACCGCATCGCCAGTCTCAAGTCTCATATCCTCATCCACGAGACTGAGGAGAGTCTCTTCTGCACCGAGTGTGGCGACGAGTTTCCTAACCAGATGCAACTGGACATTCACGTGAAGAGTCACGACGAGGAGTGGGTCAAGCCACCGGCCCGGATATACGATTGTCCCCAGTGCTCCAAGCAGTACAGCAAGGCGGCAGTGCTGCGGCAACACATGAAGGACCACTTCAAGGTGAAGGAGGCGCGCAGCATGAAGAGCCAGAACCGCGCGGTACGCCGAGGCAGACTGCTTCACTCGTGTACCGTGTGTCACAAGAACTTCCAGAAACCCAGTCAGCTGGTCCGCCACCAGCGTATTCACACAGGGGAGCGACCCTTCAAGTGTGATATGTGTCCGAGATCGTTCAACCAGAAGGGCTCGTTGTTGATTCACATGTCGTCCAAGCACAAGGGCATGAGACCGTTCCAGTGTCAGTTCTGCAGCGCCACGTTCAGTCAGAAAGGTAACCTGAGGGCGCACGTGGTGAGGCTCCATTCGATACCAAACTGTCAGGAGACTGTCTACCAGTGTACTCAGTGTTCCTGTGTGTTCCGCAAACTTGGCAGTCTCAACGCTCATCTCAACCGGATGCATCCGCCCTCCGAACAGATCACGGCTGAGCAAGCATCTCAACAACTCAACCAAGTTAAGAAAAAAGTTCAGCTTTCCAGTCATTTCAAAGACAATTCGGATAAAGaaaatgAAATTTACGAAGAGAGAGATACATTTCCTAGTTCCAAACTGATTACTGTGACCAACACGTTAGAAGATGGATCCATCAAACATACGACGATGAAACAGAGATCAGTCGGCACTATAAAGTGGCATCAGTGTAACTTCTGTGGCAAAGAGTTTAAGAAGCCCTCTGACCTGGTGAGACACACACGGATACACACACAGGAGAAACCATACCAGTGTAAGCATTGTTCGGCGCTTCACGTGCGCTGCCTTCGCCGCCACGCCAAGACTCACATGAAGCCAAAGGAGTTCCGGTGCAAGAACTGCCCGATGACATTTCCGACCAACCTGCTCCTCAGACACCACAAGAGCTTTCCCTGCAGCGAGCAAGTGGCAGGACAAGAGTTCGAGGAGGTGGACGAACCACCGATGCCGGAACAAGAGTCTGAGATAGAGATGAACATAGACCTGCCACAGACGACGGAGGTGGACCCGCTGCCCATGCTGCAGGAGGAGGAGATTCAGGAAGTGGTGCAGGGTGAGTTCACGGCTGACACCGAGGAGCAGGTGCCTGTCATCACCATCGAGCAGAGTGTGGAGTTCGCCGCACCGGAGTTGCAGCAGCCACTGGTCATCACTGACAAAGataACAACTGCACCTGGATCGACACTGGTCAAGACCCCGTCAGTCGGCCGACCACGAGCATGTACCAAGTCTGCCTAACTCAGTGTTACTTAACGCAGATGCCGGACAAGCCTCACCAGTGCAACGTCTGCAACGTGAGTTACAGCAAGGCGCAACACCTCAAGGTGCACATGCGCACGCACTCGGGCGAGAGACCTTACACCTGTCAGGAGTGCTCTAAGACGTTCACCTCGGCCAACATCCTGAAGGGGCACATGCGCACTCACAACATGCTGCAGAAGGGACACAAGTGCAAGCAGTGTGGCAAGTACCTGAGCACCAAGGGGAGTCTGCTGCGCCACGCCGAGTTGCACGCCACTAGCGCACCCTTCATGTGTCCGTACTGTCCACGCAGGTACAAGTCCAACAGCACCTGTCGCAAGCACATCAAGACTGCGCACCAGTTTGTCATCACGGTAATGCTGGGACGCATGAGATTGGAGAACGGAGAGAAGCATCAGAAGATCCTGGTACAGACCAATGAGGAGCCGGAGATGCTGGAGGATACGGAGACTCAGGACGAGGATGAGCCACGAATTTGA
- Protein Sequence
- MDNHEEVGFMDTQIVTFPSEIYNSNGYYFTSDGTATVLGANDGLGIGEINMNLPVITIPVQFIPDNTQIQQQVLNPEIVTPVPTTIYIDPSQLAFFNGGQLMITEDGLLTTSATLSSDQLTQNKVDEGTYLNVSETPQNIQDQISEFELCMETAEELMLEDSAEMNNVLNATRAQIAAQALQVASSSVLEEPVAAAPQQAVLQEEAAEELEPAVSKDAEVQPPIRKGPFKCEVCSKEFPAHYQYRKHMLVHADDKPHKCSGCSASFNNPDNLVLHQATHQVEDPQCPMCNKKFNRIASLKSHILIHETEESLFCTECGDEFPNQMQLDIHVKSHDEEWVKPPARIYDCPQCSKQYSKAAVLRQHMKDHFKVKEARSMKSQNRAVRRGRLLHSCTVCHKNFQKPSQLVRHQRIHTGERPFKCDMCPRSFNQKGSLLIHMSSKHKGMRPFQCQFCSATFSQKGNLRAHVVRLHSIPNCQETVYQCTQCSCVFRKLGSLNAHLNRMHPPSEQITAEQASQQLNQVKKKVQLSSHFKDNSDKENEIYEERDTFPSSKLITVTNTLEDGSIKHTTMKQRSVGTIKWHQCNFCGKEFKKPSDLVRHTRIHTQEKPYQCKHCSALHVRCLRRHAKTHMKPKEFRCKNCPMTFPTNLLLRHHKSFPCSEQVAGQEFEEVDEPPMPEQESEIEMNIDLPQTTEVDPLPMLQEEEIQEVVQGEFTADTEEQVPVITIEQSVEFAAPELQQPLVITDKDNNCTWIDTGQDPVSRPTTSMYQVCLTQCYLTQMPDKPHQCNVCNVSYSKAQHLKVHMRTHSGERPYTCQECSKTFTSANILKGHMRTHNMLQKGHKCKQCGKYLSTKGSLLRHAELHATSAPFMCPYCPRRYKSNSTCRKHIKTAHQFVITVMLGRMRLENGEKHQKILVQTNEEPEMLEDTETQDEDEPRI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -