Eonu040842.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Empoasca onukii
Gene Symbol
-
Assembly
GCA_018831715.1
Location
CM032067.1:21371423-21384918[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 3.3e-07 3.3e-05 25.3 2.5 1 23 10 32 10 32 0.99
2 19 0.0001 0.01 17.5 7.0 1 23 38 60 38 60 0.99
3 19 0.00047 0.047 15.4 0.8 1 23 147 169 147 169 0.98
4 19 3.3e-07 3.3e-05 25.3 2.5 1 23 175 197 175 197 0.99
5 19 0.0001 0.01 17.5 7.0 1 23 203 225 203 225 0.99
6 19 4.8e-06 0.00048 21.7 0.1 1 23 255 277 255 277 0.97
7 19 0.031 3.1 9.7 0.4 1 17 283 299 283 300 0.95
8 19 7.1e-06 0.00071 21.1 0.7 1 23 311 333 311 333 0.99
9 19 0.011 1.1 11.1 0.4 1 23 339 361 339 361 0.98
10 19 8.2e-05 0.0081 17.8 1.3 1 23 367 388 367 388 0.96
11 19 5.1e-06 0.0005 21.6 3.8 1 23 394 416 394 416 0.99
12 19 4.7e-07 4.7e-05 24.8 1.5 1 23 422 444 422 444 0.98
13 19 5.2 5.2e+02 2.7 2.4 1 23 450 472 450 472 0.86
14 19 0.34 34 6.4 4.2 3 23 489 510 488 510 0.93
15 19 0.0016 0.16 13.7 2.6 1 23 516 538 516 538 0.98
16 19 6.6e-05 0.0065 18.1 0.7 1 23 544 566 544 566 0.95
17 19 6.5e-06 0.00065 21.2 5.4 1 23 572 594 572 594 0.99
18 19 2.2 2.2e+02 3.8 3.1 1 23 757 779 757 779 0.98
19 19 6.4e-05 0.0064 18.1 1.0 1 23 785 807 785 807 0.99

Sequence Information

Coding Sequence
ATGGTGACTCACACTGGAGAAAAAGCGTATCAGTGTGAATTCTGCAACCGGTTCTTTTCCCAACCCAGCAACTTGAAACAGCACAGGCGTATTCACACCGGGGAGAAACCCTACCAATGTAACGTTTGCTTCAAGTCTTTCACACATTTGAAGAGTCTCCACGCACACAAACGCACTCACTCGGAAGAAACACCACGCAGTAATGGTGCTGCTGAGGAGAAACCAGCCGTCGAAGCACAGGTGGCAGCACAGAACGAAGAGAAAGCCTTCACAAGTGATGTAAACAACTTGGACCTCGTGGAACTCAGCTTGTCTTCATCTCAGTATCCGGAAGCTGCAAGTCCAGCAAGAGCCGAACTGGGATTTGTTGGAGAAGCTAAGGATTCACCAAGCACCGAGAAGGCAGAGGAGAAAACGTCCAAACTTGCGGAAAAACGGTTCAAGTGTACAGAATGCAGCTACACAAGCAATCAAGCCCGGAACGTGAAAGCTCACATGGTGACTCACACTGGAGAAAAAGCGTATCAGTGTGAATTCTGCAACCGGTTCTTTTCCCAACCCAGCAACCTGAAACAGCACAGGCGTATTCACACCGGGGAGAAACCCTACCAATGTAACGTTTGCTTCAAGTCTTTCACACATTTGAAGAGTCTCCACGCACACAAACGCACTCACTCGGAAGAAACACCGCGCAGTGATGATGCTGCTGAGGAGAAACCCGCCGTCGAAGTGAGCGTGACTGCACCGCACGAAGAGAAACCCTTCATGTGTGATATTTGCGGTAAAGGTTTCAGTCAAGCGGGAAAACTCAAGGCACACAAGAGTGTTCACAGTGGGGAAAAACCGTACAAGTGCACGGAATGTAGCTACGCGACCAGTAGAGCCGACCATCTCAAGACGCAGAGCGTAACTCACACGAAGGAAAGAGCGTACAAGTGTGAGTTGTGTGACAAAACGTACGCTCAGGCTAGTAAGCTTCTGATACATAAACGCAGCCACACGGGGGATAAACCGTATAAGTGTAGCGTCTGTGCATTTGCCGCGTACAGCTCCACCGAACTGAAGACACACATGATAAAACACACGGGAGAGAAAGCGTACAAATGTGATATTTGCGACAAGTCGTTTACGTACGCTAGTCTGTATTCTCACAAACGTGTTCACAGCGAGGAAAAGCCGTACAAGTGCACAGagtgtagttttgtttgtaaacgaCCCAACAATCTGAAGGAACACATGAGGACGCATACGGGAGAAAAACCTTACAAGTGCGAAGTGTGCGAGAAGGCGTTCACGCAGTCGGCTCATTTACGTACGCACATGACTGTCCATACCGGGGTGAAACCGTTCAAATGCAGTGAGTGTCCTTATTCTAGTAACTGCCAACGGGATATTAGGAACCACTCGTCGGTCCATGCGAGAGAAAAAGCAGTCAGAACCGATACGGAGAACAACTCGAACAATTGTACTTTGTGTTCGTACGTCGGCAAAAATCTTCACGATTTGAAGCATCACATGAGTTTTAAACACGAAGTGGAGAAGGCTTTCCAGTGTGAAACTTGCGATAAAACCTTCGCCTGTCCGTATTATCTTAACCAACACAAACTAATTCACACCGGGGAGAAACCTTTCTTATGTACCGAGTGTGGTTACGCTTGCTACCAAGCTATTAATTTGAAAGTACACATGAAAATACATACGGGGGAAAAAGAGTACAAGTGCGATGTGTGTGAGAAGCAGTTCACTCAGTCAACTCATCTGAAAACGCACAAGCGGACTCATACGGGCGAGAAACCTTTTCAATGCACTCTTTGTGAATTTGCCATCATGGAGACTGAGTTTGTATTGTGTGCAGACGACACTGAGTTTGTATTTTGTGCAGACGACGCTGATGTCAAACAGTTGATGCAGTACAAGGTTGAAGAGGAAGTTTGTGATACAGGAGACGAGACGGATAGACAGTCCCAGTCAGCTGATTGGAATCAAGAATGCGACCTTGTAGTGAAACAGGAAATTATCGAGGTGGTGGAAGAAATGAAAGCAGAAATGGATGAAGGAACAAATAGCGATGTTAAGGACTTGAAACCCTGTGATCTGCTTGGCACCAGCTTGTCCTCGTCCAACTGCCGGGTGAAACAGGAGAAAGCAAGTCCAGAAGCTGTACACCCGGGAGTTGCGGGAGAAAATCAGGATTCACAGAACATCGAGAAGACAGAAGATGCCCAGAGGAAACTACCTGAACGTGTTGTCAACAAAATACACAAACTGTACAAGTGCTCAAAGTGTAGTTACTTGAGTAAATCAGTTTGTGGTATCAAGAATCACTTGAGGATACACAACGCAGTGAGAGTCTATAGATGTGAACTGTGCAACACATTATTCACCCAATCGGAGAGTCTAGAACAACACAAACGAGTTCACCGAGTGGGAGACGATTCACGGAGCTTAGAGGACACTGGCGCTCAGAGGAAAACCTACGGCATTCAGGGGAAAACAGATGAAATTCAGAGGAAAACAGACAACATTCTGAGGAAACCCTACGGCACTCAGGGGAAATCGTACGGCATTCAGAGGAAAACAGACGAAATTCAGAGGAAAACCGACAACATTCAGAGAAAACAGATAACATTCTGA
Protein Sequence
MVTHTGEKAYQCEFCNRFFSQPSNLKQHRRIHTGEKPYQCNVCFKSFTHLKSLHAHKRTHSEETPRSNGAAEEKPAVEAQVAAQNEEKAFTSDVNNLDLVELSLSSSQYPEAASPARAELGFVGEAKDSPSTEKAEEKTSKLAEKRFKCTECSYTSNQARNVKAHMVTHTGEKAYQCEFCNRFFSQPSNLKQHRRIHTGEKPYQCNVCFKSFTHLKSLHAHKRTHSEETPRSDDAAEEKPAVEVSVTAPHEEKPFMCDICGKGFSQAGKLKAHKSVHSGEKPYKCTECSYATSRADHLKTQSVTHTKERAYKCELCDKTYAQASKLLIHKRSHTGDKPYKCSVCAFAAYSSTELKTHMIKHTGEKAYKCDICDKSFTYASLYSHKRVHSEEKPYKCTECSFVCKRPNNLKEHMRTHTGEKPYKCEVCEKAFTQSAHLRTHMTVHTGVKPFKCSECPYSSNCQRDIRNHSSVHAREKAVRTDTENNSNNCTLCSYVGKNLHDLKHHMSFKHEVEKAFQCETCDKTFACPYYLNQHKLIHTGEKPFLCTECGYACYQAINLKVHMKIHTGEKEYKCDVCEKQFTQSTHLKTHKRTHTGEKPFQCTLCEFAIMETEFVLCADDTEFVFCADDADVKQLMQYKVEEEVCDTGDETDRQSQSADWNQECDLVVKQEIIEVVEEMKAEMDEGTNSDVKDLKPCDLLGTSLSSSNCRVKQEKASPEAVHPGVAGENQDSQNIEKTEDAQRKLPERVVNKIHKLYKCSKCSYLSKSVCGIKNHLRIHNAVRVYRCELCNTLFTQSESLEQHKRVHRVGDDSRSLEDTGAQRKTYGIQGKTDEIQRKTDNILRKPYGTQGKSYGIQRKTDEIQRKTDNIQRKQITF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-