Eonu009229.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Empoasca onukii
Gene Symbol
-
Assembly
GCA_018831715.1
Location
CM032059.1:51672113-51681981[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.00035 0.035 15.8 1.2 1 23 27 49 27 49 0.98
2 23 0.0014 0.13 13.9 7.9 1 23 55 78 55 78 0.96
3 23 0.016 1.6 10.6 2.0 1 23 84 106 84 106 0.96
4 23 0.00021 0.021 16.5 4.0 1 23 112 134 112 134 0.98
5 23 0.027 2.7 9.8 1.0 1 23 140 163 140 163 0.96
6 23 0.00018 0.018 16.7 2.2 1 23 168 190 168 190 0.98
7 23 0.0033 0.33 12.7 1.8 1 23 208 230 208 230 0.99
8 23 0.00041 0.041 15.6 4.0 1 23 236 258 236 258 0.99
9 23 1e-05 0.001 20.6 4.0 1 23 264 286 264 286 0.98
10 23 0.00015 0.015 16.9 2.1 1 23 292 314 292 314 0.98
11 23 3.5e-05 0.0035 18.9 1.8 1 23 320 342 320 342 0.98
12 23 0.0022 0.21 13.3 2.0 1 20 348 367 348 370 0.94
13 23 9e-05 0.009 17.6 0.7 3 23 378 398 376 398 0.97
14 23 1.7e-05 0.0016 20.0 3.0 1 23 424 446 424 446 0.98
15 23 0.0052 0.52 12.1 4.0 1 23 452 474 452 474 0.97
16 23 0.00016 0.015 16.9 1.6 1 23 480 504 480 504 0.98
17 23 0.0057 0.57 12.0 3.7 1 23 510 532 510 532 0.98
18 23 2.8e-05 0.0027 19.3 3.6 1 23 538 560 538 560 0.98
19 23 0.00013 0.013 17.2 2.6 1 23 566 588 566 588 0.98
20 23 0.00021 0.02 16.5 5.4 1 23 594 616 594 616 0.98
21 23 0.022 2.2 10.2 8.1 1 23 622 644 622 644 0.95
22 23 4.4e-05 0.0044 18.6 4.9 1 23 650 672 650 672 0.99
23 23 0.00093 0.092 14.5 1.9 1 23 678 701 678 701 0.96

Sequence Information

Coding Sequence
ATGGCGTCCGATTTTATCATCAAAAGAACAAACAATAAGGAAGTAAGCAAAGTGAATGGGAAATTGCGTTACCGAAATTTTGAGTGTTCCATCTGTGGATATCGAACCAATCAGCAACGGGCATTGTTAGAGCACATTCACAAGCACACTGGAGATAAAATTCACCACTGCCTCCACTGTAATAAGAGCTTCAGGTACAGAAACACTCtgataaaacatttgaaagtgCTGCACACAGACTCTGCAAAGTTCTCGTGCAAGGTTTGTCAGAGGAAGTTCAGCCAGGAGGGGGAATGTGCGAGGCACGAGCAGATACACACAGGAGCTAGACCGTTCTCGTGTCACCACTGCGCGTACACGTCCAAGACGAAGGGAGCTCTGAAGGAACACATGCGCATACACAGTGGGGAGAAGCCATACGCGTGCGACCAGTGTACGTACAAGACTGCATACAGCACACTGCTGCGACAACACCGAGAGCGACTGCACCTGCAGCAAACATTCTCCTGCCAACTGTGCGACTACACCTCCAACGTCAGCAGGAACCTGAAGAAGCATCTGAAAACCCACCAGTTGGACCAGATATTCAGTTGTAGCCAGTGTGATTATTCAGGTAACCTGTACAGCTGTGACCATTGTGAATACAAGACTAGCGAGCTGTCTAGATGGAGAGCGCACATTCGCACTCACAACACAGACCACTGTTACAAATGCAACGAATGCACTTTCAGCTGTGGAACCAGGAGCGGTTTCACGAAGCACTTGCGTGTTCACTCCGGAGAAACTCCGTACGAGTGTTCAGTGTGCAAGAAAAGGTTCAAGCAGTCCGGACACCTCAAGGAGCACAGTCGCTCTCACACGGGGGAGAAGCCGTACTCTTGTCCCGTCTGTGACTACCGATGTGCTTACAGCAGTCTCATCAAGAAGCACATGACCACTCATTCTGAGGAGAAGCCTTACGCGTGCAGTGAGTGCGAGTTCCAGACCAAGTCTCGCTACAACCTCAACACGCACATGCGTACACATACGGGTCACAAGCTGTTCTACTGTGACGACTGTGACTTCTCCTGCAACTCTTCCTCCACACTCAGGGATCACTTGTGGGTCCACACCGGACGCAAACCGTTCGGCTGCCACATATGTGACGAAGAGTTTCCCAGAGAAAGGCTGTTAAAAAGACATCTGATATCACATGAGAATAGTAAAGACGGGGTGCGATCTGCAGCTCTAAAGGAGCACATTTGCAGGAAGCACACAGGAGAAAAAAACTATGCGTGCAAACTGTGTCCTCGGAAATTTGTAAAATCACACGAGTTAAAAACTCACATGAGGCAACACACTGGGGAAAAACCATTTGCGTGTACGCTGTGTGACTATAAATGTGCCCACCCAAGATCTCTAGTCGACCACATGTGTGTGCATACCGGCCAGTTGCCGTACAAGTGTCAGGTAGACGGATGTGAGTACAAGTGTGTGAACCCGAGCACACTAAAGAAGCACGTGAGGATGCACACAGGAGACTTGCCATATCCGTGTCAGTTGTGCAGCTACAAGGCGATGCACTCGGGTCACCTACGAACCCACATGCGCTCGCACACTGGCGAGAAGCCCTTCACTTGCACGTACTGTGACTTTGCCTGTGCACGCAGGAGCTATCTCAAGCAACACCTGCGTGTCCACACACAGGAGAAACCTTACATGTGCACTGTCTGTGGGTACAAGTGCAACCAGTCCAAGGTGCTCAAAGAGCACATACGCACGCACACTAACGAGAAACCGTATCACTGCAGTGTGTGTGAATACCGGTGTGCACAGAACAGTACACTGAAGCAACACATGCGCTCACACACAGGGCACAAACCACACGCTTGCCGCTACTGTCACACACACTTCTCTAGGCTGGAACACTTGCGCAGTCACGAGCTGATACACAGTGGTGAGAAACCGTACCAATGTGAACTGTGTAGCTACCGCTGCCGCAAGTCCTACAACCTCAAGTCCCACATGCGGGTTCACACCGGAGAGAAGCCTTACGTCTGCGGCCTCTGTGATTTCAAGTGTTCCCAACCCAAGTCCTTACAGAATCATATCTCAAATTTTCATGGTGACAAGTTATGTCCCAACATTGATGTCGACcagttttag
Protein Sequence
MASDFIIKRTNNKEVSKVNGKLRYRNFECSICGYRTNQQRALLEHIHKHTGDKIHHCLHCNKSFRYRNTLIKHLKVLHTDSAKFSCKVCQRKFSQEGECARHEQIHTGARPFSCHHCAYTSKTKGALKEHMRIHSGEKPYACDQCTYKTAYSTLLRQHRERLHLQQTFSCQLCDYTSNVSRNLKKHLKTHQLDQIFSCSQCDYSGNLYSCDHCEYKTSELSRWRAHIRTHNTDHCYKCNECTFSCGTRSGFTKHLRVHSGETPYECSVCKKRFKQSGHLKEHSRSHTGEKPYSCPVCDYRCAYSSLIKKHMTTHSEEKPYACSECEFQTKSRYNLNTHMRTHTGHKLFYCDDCDFSCNSSSTLRDHLWVHTGRKPFGCHICDEEFPRERLLKRHLISHENSKDGVRSAALKEHICRKHTGEKNYACKLCPRKFVKSHELKTHMRQHTGEKPFACTLCDYKCAHPRSLVDHMCVHTGQLPYKCQVDGCEYKCVNPSTLKKHVRMHTGDLPYPCQLCSYKAMHSGHLRTHMRSHTGEKPFTCTYCDFACARRSYLKQHLRVHTQEKPYMCTVCGYKCNQSKVLKEHIRTHTNEKPYHCSVCEYRCAQNSTLKQHMRSHTGHKPHACRYCHTHFSRLEHLRSHELIHSGEKPYQCELCSYRCRKSYNLKSHMRVHTGEKPYVCGLCDFKCSQPKSLQNHISNFHGDKLCPNIDVDQF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-