Eonu028685.1
Basic Information
- Insect
- Empoasca onukii
- Gene Symbol
- -
- Assembly
- GCA_018831715.1
- Location
- CM032063.1:45730536-45733719[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1e-05 0.0011 20.5 0.3 1 23 139 162 139 162 0.95 2 14 1.6e-06 0.00016 23.1 1.7 1 23 167 189 167 189 0.97 3 14 2.3e-06 0.00023 22.6 2.0 1 23 195 217 195 217 0.98 4 14 2.1e-05 0.0021 19.6 3.2 1 23 223 245 223 245 0.97 5 14 6.1e-06 0.00061 21.3 3.6 1 23 251 273 251 273 0.98 6 14 9.9e-07 9.9e-05 23.8 2.1 1 23 279 301 279 301 0.99 7 14 0.00018 0.018 16.7 0.6 4 23 311 330 311 330 0.97 8 14 4.6e-07 4.6e-05 24.9 1.5 1 23 336 358 336 358 0.98 9 14 7.9e-06 0.00078 21.0 0.9 3 23 366 386 364 386 0.98 10 14 2.9e-05 0.0029 19.2 8.4 1 23 392 414 392 414 0.98 11 14 1.1e-06 0.00011 23.7 1.6 1 23 420 442 420 442 0.99 12 14 6e-05 0.006 18.2 4.1 1 23 448 470 448 470 0.97 13 14 4.2e-05 0.0042 18.7 0.5 1 20 476 495 476 498 0.94 14 14 1.5e-06 0.00015 23.2 2.0 1 23 503 525 503 525 0.98
Sequence Information
- Coding Sequence
- ATGAAGGAGGAGTTCATTCAGGAACTGGTGGGTTTCAAAAGTGAAGAAGACGGTCAAATCTTCGCTGCAAAGgtTACGAAAAAAGAACTCAAATTGGATACTTCTGGTCATCCTAAAGAAGAGTGGAAAGAACTCCTCAAACAAGATGAAGCGTCAGCTGTTAAGATCGACAGTTTTAACAATCAAAGTGAAACACAGTTATCAAGTCTTGCTTCTACAAGCAACTTCTCTGAGACTCCAGCCTGCGGCTTGGTTGAGAGTAGAGTATCTGAGGAAGCCAATCGAGAAAAAGATACTTTGAATCAACCAAGTAATGCATTTGTAAACCACAACGTAGATTCTCGTTCACCTGAAGGAAGCGTTTCAGGCGACGTCCAGGATGAAAACGTCTGTTCATCTCTGGAGGCGGAGACTTTCACCTGTAACTTGTGTGGTAAATCCTTCCCCAAGCGTAACGCGTTGATGACGCACCTACTGTTGATACACTCAGGGCGATCCTTCACCTGCCACGACTGTGGGCGATCCTTCACTCAGAGAGGATCTTTGGTGTTGCACACCAAAGCGCATTTAGGGATCAAGCCTTTCAGCTGTCATTTATGCGACAAGTTCTTCCCTCGAAGAGCAAATTTACGTCTTCATCTCGCGACCCATTCGAAGGAAAGACTGCACATTTGTCACCTTTGCAACAAGAGTTTTGTACAGAGATCCACTTTGTTGGGTCATCTCCGTATTCACTCCGGCGTGAAACCGCACAGATGTGAATATTGTGGTTATCGCTTCTTTGAAAGTTCAGCTTTGACCAGACATCTCAGAAAGCACACAGGAGAGACACCTTTTAAATGCAGTGAATGCAGTAAAAGCTTTCGTCGAAGAGCTTCACTAGTACAGCATCTCAAGAGCCACCGAGGGGTGCCAAAACCCAAACCCTTCCACGAATGTGGCAAAAGCTTCTTTGCCAAAAACAACTTGACCGCACATCTTCGCGTACACACTGGGGAGAGACCTTTCAAATGCAAAGAGTGCGGGAAGCGCTTCTCCGAGCAATCCAGCCTGAGCTCACATCTCCTGTCGCACTCGGGGGAGAGAGCATTCGGCTGTGATCAATGTGGCAAGTATTTCGTTCAGAAGTCAACTCTGGAGAAGCACTTTCGTATACACACTGGTGTCAAACCTTACCGGTGTGACCAGTGTCAGAAGTGTTTCACGTACAAGTCGACACTGAACAGACACCTCCACTCGCACTCAGGGGAGAAGCCCTACCAGTGCTCTCAGTGTGGTCAGGCGTTCGGCCACAAGTCAACTCTGGTCAACCATATCAAAACCCACTCCGACGTCAGAGCCCACCGCTGCTCAATCTGCGATCAGTCGTTCCATCGAGAATCATACTTGAAAATCCATGTCCGTTTACACTCTGGGGAGAGGCCTTACAAATGTGAGTTCTGCGGGATGTCGTTCGCTCAAAAGCAGAGTTTGACTTCTCACCTTCCTATACACACGGGGAAAAAATTCACCTGTGACTTGTGTCAGAAGTCTTTTgctacaaaaaattatttgaagagtcATATGCTGTCACATTCTAAAGACTAA
- Protein Sequence
- MKEEFIQELVGFKSEEDGQIFAAKVTKKELKLDTSGHPKEEWKELLKQDEASAVKIDSFNNQSETQLSSLASTSNFSETPACGLVESRVSEEANREKDTLNQPSNAFVNHNVDSRSPEGSVSGDVQDENVCSSLEAETFTCNLCGKSFPKRNALMTHLLLIHSGRSFTCHDCGRSFTQRGSLVLHTKAHLGIKPFSCHLCDKFFPRRANLRLHLATHSKERLHICHLCNKSFVQRSTLLGHLRIHSGVKPHRCEYCGYRFFESSALTRHLRKHTGETPFKCSECSKSFRRRASLVQHLKSHRGVPKPKPFHECGKSFFAKNNLTAHLRVHTGERPFKCKECGKRFSEQSSLSSHLLSHSGERAFGCDQCGKYFVQKSTLEKHFRIHTGVKPYRCDQCQKCFTYKSTLNRHLHSHSGEKPYQCSQCGQAFGHKSTLVNHIKTHSDVRAHRCSICDQSFHRESYLKIHVRLHSGERPYKCEFCGMSFAQKQSLTSHLPIHTGKKFTCDLCQKSFATKNYLKSHMLSHSKD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -