Eonu012512.1
Basic Information
- Insect
- Empoasca onukii
- Gene Symbol
- -
- Assembly
- GCA_018831715.1
- Location
- CM032060.1:5505858-5518012[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00066 0.066 14.9 3.3 1 23 317 339 317 339 0.97 2 18 2.5e-05 0.0025 19.4 1.1 1 23 345 368 345 368 0.96 3 18 0.00017 0.017 16.8 0.5 2 23 375 396 374 396 0.97 4 18 0.0093 0.92 11.3 6.0 1 21 402 422 402 424 0.94 5 18 1.1e-06 0.00011 23.6 5.0 1 23 430 452 430 452 0.99 6 18 9.7e-05 0.0096 17.6 2.1 2 23 459 480 459 480 0.96 7 18 2e-05 0.002 19.7 5.8 1 23 486 508 486 508 0.98 8 18 4.4e-06 0.00043 21.8 2.6 1 23 514 536 514 536 0.98 9 18 6.6e-05 0.0065 18.1 7.1 1 23 542 564 542 564 0.98 10 18 2e-05 0.002 19.7 6.6 1 23 570 592 570 592 0.98 11 18 4.3e-07 4.2e-05 25.0 2.8 1 23 598 620 598 620 0.98 12 18 2.8e-06 0.00028 22.4 7.9 1 23 626 648 626 648 0.98 13 18 4.7e-06 0.00046 21.7 7.3 1 23 654 676 654 676 0.98 14 18 7.6e-06 0.00076 21.0 7.8 1 23 682 704 682 704 0.98 15 18 3.3e-06 0.00033 22.2 1.2 1 23 710 732 710 732 0.98 16 18 0.00024 0.024 16.3 0.3 1 23 738 760 738 760 0.97 17 18 0.013 1.2 10.9 5.4 1 23 769 791 769 791 0.98 18 18 0.00015 0.015 16.9 0.3 2 23 797 818 797 818 0.96
Sequence Information
- Coding Sequence
- ATGAATCCGTCAGATCCTCTGGCAACATCAGTTGTCACAACGTCTTCAATGCCGAACGCTGAAGTCGTTCCAGTGCCGGTGACGCAGGGCGCTGACATGTGTCAAGGCACGACGGTGGCGCTTTCCAGTGTCGCCAAGTACTGGGTCCTCACCAATCTCTTCCCCGGACCCATTCCTCAGGTGTCGTTCGTGCAGACGCCAGGCAAGGACGGAGGACAACCTTGTCTCACTCCCGTCAACGTCGGCGTGGAGACCATGACTCTCATCCAACAACATCAAGCTCAGTCGATGCCGGTGAATGTGGGCGGGATGACAGCGCTGACGCTGCCGATGGCTCTGCCCTCGCCCACTCACGCCTCCACACAGACTCTACAGCTTCACGACAAGTCCACAGTGGTGACAGAGCAGTGCGGCAACAACCAGGTGCATTGCCAGGTGCAATGTGACTTGACGCTGGTACAGCCGCAGACCCTGCAGATCCCAACGTCGCAGAGTATCACACTCACTCCCGAGCAACACCAGCAGCTGCAACAACAGGTGCTACAACATCAAGCACTCAGTCAGTCCCAGGAGCCACAGCAGATAGAGCTGGTGGTACAGGAGGTGAAGGTGGAGGACAACAAGATCAAGAATGAACAAGGAGGTGTGCTCACAAGCTATCACAACGACGGCAAACATCACCAACTGTCACAGCAGAACCACCAAGCCATACTCGTGGACAAGTCTGCTCTTGGCGAAAATATTATCTATAAACCAGTGAATGTGGACGAGCTGAACCAACTGCTGGCGTACCACGAAGTGTTCGGCAAGTTACAGACAGGCCAGGTGTCGGTGGGTGTGGAGACTACGGGGGAAGGTAGCACAGCCACAGCGGGGGTGACAGTGGCGGGGGCCTCAGCGGTGGTGAAGAGTGTAGAGGAGGAGGGACCCAACTCACCCCCCGGCTCCCATCCCTGCGACCTCTGTCACAAGGTGTTCCCCTACAGATACCAGATGATAGTGCATCGGCGCTACCATACTGAGCGCAAGCCTTACCAGTGTCAGGTTTGCGGCAGGTCCTTTGAGAGCAGTGAAGACTTGGTTCAACACGGCAAAAGTTGTCACAACGAGAGCTCCATGCTCACATGTCAGATATGTTTCCACGTGTTTGCGTCCGCGGGCAGTCTAGAGCGGCACGCGCGCAGTCACTGTCTAGACAAGCCGTACCAGTGCAACGTCTGTGCCAAGGCATTCCACCGTAAGGAACACCTGGAGAACCACTCTCGCTGCCATTCTGGGGAGACTCCCTTCCGCTGCCAGTACTGCGACAAGACCTTCAGCCGCAAGGAACACATGGTCAACCACATCCGCAAACACACCGGTGACACGCCGAACCGATGTGATATATGTAAGAAAGCGTTCACACGCAAGGAGCACTTTCTGAACCACGTGCTGTGGCACACAGGGGAGACGCCGCACACGTGCACACTCTGCGGGAAGAAGTATACGCGCAAGGAACACCTAGCTAATCACACGCGCAGTCACACCAACGACACACCGTTCCGCTGCGAGGTGTGCAGCAAAGCCTTTACGCGCAAGGAACACTTCACTAACCACATCATGTGGCACACCGGCGAGACTCCACACAGGTGTGACTTCTGCTCGAAGACGTTCACCCGAAAAGAGCACCTGTTGAACCACTTGAGACAACACACCGGCGAGTCTCCTCATCGCTGTTCCTACTGTACCAAGAGCTTCACTCGCAAGGAGCACCTGGTGAATCACGTGAGGCAGCACACCGGTGAGACACCGTTCCAATGTAACTTCTGTCCGAAAGCTTTCACACGCAAGGATCACCTGGTGAATCACATCAGACAGCACACGGGAGAGAGTCCTCACAAGTGTACATACTGCACTAAGAGTTTCACCCGCAAGGAACACCTCACTAACCACATCAGACAGCACACAGGGGAATCGCCGCACAAGTGTTCATACTGCTCCAAGTTCTTCACACGCAAAGAGCACCTGACCAACCACATCCGCATCCACACGGGAGAGTCACCACACCGCTGCGAGTTCTGTCAGAAGACGTTCACGCGCAAGGAACACTTGACCTCGCACTTGCGTACGCACGCGGGAGATACTGAGCATGTCTGCAATGTGTGCTCCAAGCCCTTCACCAAGAAGGAGGCTTTGGTAAACCACATGCGCAGTCACACGGGCGAGAGCCCTTACGCATGCCAGGAGTGCGGCAAGAGCTTCCCACTCAAGGGTAACCTGCTGTTCCACCAGCGGTTGCACAACAAGGGCACAGGTGAACGTCCGTTCCGCTGTGACCAGTGTCCCAAGGACTTCACCTGCAAGGGGCACTTGGTGTCTCACAAGCGCAGCCACGCTGGACCCCCTCCCAAGTGTGAGCCTTGCGACAAGGGATTCACCACCAAGGAGGAGTTGGAGGAACATGTCAAGACTCATGAGCAGATGAAACAAGACGTCTCAACACAGCTCATGTCGTCCCCCACCCCACCTCCACCCCACCCCTTCCCCTACACACTCCCTCCCTCCACCTCCCACCCCCCTGTGCTCGCCACTTACTAG
- Protein Sequence
- MNPSDPLATSVVTTSSMPNAEVVPVPVTQGADMCQGTTVALSSVAKYWVLTNLFPGPIPQVSFVQTPGKDGGQPCLTPVNVGVETMTLIQQHQAQSMPVNVGGMTALTLPMALPSPTHASTQTLQLHDKSTVVTEQCGNNQVHCQVQCDLTLVQPQTLQIPTSQSITLTPEQHQQLQQQVLQHQALSQSQEPQQIELVVQEVKVEDNKIKNEQGGVLTSYHNDGKHHQLSQQNHQAILVDKSALGENIIYKPVNVDELNQLLAYHEVFGKLQTGQVSVGVETTGEGSTATAGVTVAGASAVVKSVEEEGPNSPPGSHPCDLCHKVFPYRYQMIVHRRYHTERKPYQCQVCGRSFESSEDLVQHGKSCHNESSMLTCQICFHVFASAGSLERHARSHCLDKPYQCNVCAKAFHRKEHLENHSRCHSGETPFRCQYCDKTFSRKEHMVNHIRKHTGDTPNRCDICKKAFTRKEHFLNHVLWHTGETPHTCTLCGKKYTRKEHLANHTRSHTNDTPFRCEVCSKAFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHLRQHTGESPHRCSYCTKSFTRKEHLVNHVRQHTGETPFQCNFCPKAFTRKDHLVNHIRQHTGESPHKCTYCTKSFTRKEHLTNHIRQHTGESPHKCSYCSKFFTRKEHLTNHIRIHTGESPHRCEFCQKTFTRKEHLTSHLRTHAGDTEHVCNVCSKPFTKKEALVNHMRSHTGESPYACQECGKSFPLKGNLLFHQRLHNKGTGERPFRCDQCPKDFTCKGHLVSHKRSHAGPPPKCEPCDKGFTTKEELEEHVKTHEQMKQDVSTQLMSSPTPPPPHPFPYTLPPSTSHPPVLATY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -