Eonu012731.1
Basic Information
- Insect
- Empoasca onukii
- Gene Symbol
- -
- Assembly
- GCA_018831715.1
- Location
- CM032060.1:8317061-8320932[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.0045 0.45 12.3 0.3 1 23 22 44 22 44 0.97 2 31 0.00087 0.086 14.6 0.2 1 23 50 72 50 72 0.97 3 31 2 2e+02 4.0 10.4 1 20 78 97 78 100 0.95 4 31 0.00028 0.028 16.1 5.5 1 23 106 128 106 128 0.97 5 31 1.4e-06 0.00014 23.3 0.3 1 23 134 156 134 156 0.98 6 31 0.0061 0.61 11.9 3.3 1 23 162 184 162 184 0.95 7 31 0.0003 0.03 16.0 2.4 2 23 196 217 196 217 0.97 8 31 0.00047 0.047 15.4 7.8 1 23 223 245 223 245 0.97 9 31 5.3e-06 0.00053 21.5 1.1 1 23 251 273 251 273 0.97 10 31 2.2e-06 0.00022 22.7 0.3 1 23 279 301 279 301 0.97 11 31 3.9e-07 3.9e-05 25.1 2.0 1 23 307 329 307 329 0.98 12 31 1e-05 0.001 20.6 3.8 1 23 335 357 335 357 0.98 13 31 2.7e-07 2.7e-05 25.6 2.1 1 23 363 385 363 385 0.98 14 31 1.2e-06 0.00012 23.6 0.5 1 23 397 419 397 419 0.97 15 31 1.4e-05 0.0014 20.2 3.2 1 23 425 447 425 447 0.98 16 31 3.9e-05 0.0038 18.8 2.2 1 23 453 475 453 475 0.97 17 31 1.1e-07 1.1e-05 26.8 1.0 1 23 481 503 481 503 0.98 18 31 0.00028 0.028 16.1 3.1 1 23 509 531 509 531 0.97 19 31 1.4e-05 0.0014 20.2 2.5 1 23 537 559 537 559 0.98 20 31 0.0017 0.17 13.7 0.2 1 23 565 587 565 587 0.97 21 31 4e-05 0.004 18.8 1.6 1 23 593 615 593 615 0.96 22 31 1.3e-05 0.0013 20.3 0.5 3 23 623 643 621 643 0.98 23 31 9e-05 0.009 17.7 0.5 1 23 649 671 649 671 0.97 24 31 0.00025 0.025 16.2 0.9 1 23 677 699 677 699 0.98 25 31 1.7e-05 0.0017 19.9 3.9 1 23 705 727 705 727 0.97 26 31 1.1e-05 0.0011 20.5 0.3 1 23 733 755 733 755 0.96 27 31 0.0021 0.21 13.3 3.5 1 23 761 783 761 783 0.98 28 31 5.6e-07 5.6e-05 24.6 0.2 1 23 789 811 789 811 0.98 29 31 8.6e-06 0.00085 20.9 2.2 1 23 817 839 817 839 0.98 30 31 0.013 1.3 10.9 0.0 8 23 843 858 843 858 0.96 31 31 1.1 1.1e+02 4.7 5.8 1 23 894 916 894 916 0.94
Sequence Information
- Coding Sequence
- ATGAAGTTTGCACAGAAAGGAACACTTGTAGGCCACTACACAATTCACAGCAACAGAGACACATTTCCTTGTGACGTTTGTGATTTTGTCAGTGACAACAAAACTGACTACAAGGCTCACCTGACCAAACATCTGGATATCCCACTGTACAACTGCCACATTTGTGATTTGAGGCTTGCCAGTCAAGACAACTTAGATGTTCATATTATACAACACAAGTCGGAGAAACCATTCAAGTGTGAACACTGCTGTAAAAGGTTTTTCTCACGTAAAGACCTCCGCTCTCACATGACTTGTCATAATCAGTCAAAGCAGTTTTCTTGCAGCAAATGCGGAAAAGCCTTCACTCACCGTTGTTACCTCAAGAGTCACGAGCTGATCCATTCCAACAATCGCCCGTTTGTCTGCGGCACCTGTGGCAAAGGTTTTACTCAGCAAGCTTATTTAAAGGCTCACCAACTAAGTCATACCAGCCAGAAGAACTACTTCTGTAAGCATTGCCCCAAATCTTTCTCTTTGAAATCGATCCTGAAGAGCCACGAATTGAACCACTCTGGTGCTACACACAAGAAGAGGGTTTTTCCTTCCTGTGACGTGTGCAAGAGAACATTCCAGAACAAGACTAAACTGCTGATTCACATGAAGAGGCACAACGTGCCGACACCTCATGAATGTGAGGAGTGTGGGAAGAAATTCACTCATTTGTGCTACTTGAAAAGTCACCAGCTGAAACATTCCGGAGAGAAACCCTTTGCGTGTGATCTATGTGATAAGAGGTTCTCGATGAAGTCGTACCTACGAAACCACCAGCTGGTACATTCTTCCATCAAGCCGTACATTTGTGACGTATGTGACAAAGCCTTTACTCAGAAAGCAACATTGAAAAGTCATCAACTGCTGCACACAGGGGAGAAACCTTTCCAATGTGACATGTGTGACAAATCCTTCACGCAGAAAGGATATCTGAAGACCCACCAGCTGTCACATACAGGGGAGAAACCTTTCCAGTGTGATATGTGTGACAAGGCTTTCACTCAAAAGTGTTACTTGAAAGCACACAAACTCACCCATTCAGACGACAAACCATTTACTTGCAAAATTTGTGACAAGTCCTTTACTCAGAAAAGCTATTTGAAAAGTCACGAAATGATCCACAACGATGACAGGCCTTATCCTTATGAGAAACCTTTTGCGTGTGACATCTGTGAAAAGCGCTTCAGTCAGAAGGGATATTTGAAAAGTCACATGCTTATTCACAGTGGAGAACGGCCATTTGTCTGTAATATTTGTGAGAAGTCTTTTACACAGAAATGCTACTTGAAAGCTCATGAGTCAACTCACTCAGACGAAAAGCCATTCATCTGCTTAGAATGTGGCAAGGGTTTTACTCAAAGATGTTACTTGAAAACCCATCAGTTGGTTCACTCGGAAAACAAACCTTACGAATGTACTGTGTGCGGAAAGAAATTCAAACAGAAAAGCAATCTTAAAATTCATGAGCAGATCCACTCTGGTGAAAAACCTTTTGCTTGCCATTTGTGTGACAAACGATTCCTTCAGAATAGCacacttaaaactcacctcCTCACGCACACTGATGATTCTCCTTTCTCCTGTACAATGTGTGAGAAGAAGTTTTCTCTCAAGACCTCCTTGACCAACCACATGTTGACCCACTCGGGTGACAAGCCGTTTGCCTGCACAATTTGCCCCAAACGTTTCCTCCTAAAAGGAAGTTTGGACAGCCACATGAGAATTCACACTGGTGAAAAGCCGTTTGAATGTGAGATATGCCATAAAAAGTTCACTTTGAAAGGAAACTTGAAGATCCACTCTTTGATACATTCTGAAGAGCGGCCTTACGGTTGTACCGAGTGCGAGAAGAGGTTTGTTCTCAAAAGCAGTCTTGAAAGTCACATGAGAATCCATACCGGAGAGAAACCTTTCGCTTGTTCCGTTTGCCAGAAAGCATTCAGCTTCAAATCCATGCTCGATGCTCACTTCCGGATACACACTGGCGAAAAACCGTTTTCATGTTCAGAATGTGCCAAAAGTTTCCGACTGAAGAGCACTCTGGACGCTCACTTCAGAATCCACACGGGAGAGAAGCCCTTCTCTTGTCCCCACTGCAACAAGTGTTTCTCACTGAAAGGAAACCTATCTAGTCACATTCTGCTGCACACTGGAGAGAAACCGTACGCTTGCGATGTTTGTGGCAAGAAATTCACTCTGAAATCTAGTTTGAACACTCATGCACTGATTCACAGTGGGGAGAAACCATACGTGTGTACCATCTGCAACAAAGGCTTTCGTCTCAAATGCAGCTTGGATTCTCACTTCCGCTCCCACACTGGGGAGATGCCGTACGAGTGTAACGTTTGCGACAAGAAATTCAGCCTGAGAGGAAACCTCAACGCTCACATGTTGATACACTCTGGTGAAAAACCTTACGAATGTACACAATGTGACAAGAAGTTCCGGTTGAAGAGCAGCTTGGAGAGTCACACACGTCTGCACACCGGGATAAAACCTTTCCCTCAGAAGGGCAACTTGAAGAACCACATGAAAATCCACACCAGAGACGAAAACTTGATTTACAACACAAGAATGAGATCGTTCAACAACATCATGGAGAATATGTTCAACGGCAACCACTTCCTGTTTCCTCAAGCGGAAGAATACTCTTGTAAACTGTGCGGCTGCAAGTTTAAGGAGAAGTGTGAGTTGATGTTTCACGAGATGATGCACGGAAAGCAACTGCCGATTCCCTCCGTGCTTCTGAACACTCCACCCAAACCGTACCCTATGATGATGATGCATCCACGACCTCCACCGGAACCCTTCTGCATCGACCTAACTCTGCCGTCAAGTCATAACTGA
- Protein Sequence
- MKFAQKGTLVGHYTIHSNRDTFPCDVCDFVSDNKTDYKAHLTKHLDIPLYNCHICDLRLASQDNLDVHIIQHKSEKPFKCEHCCKRFFSRKDLRSHMTCHNQSKQFSCSKCGKAFTHRCYLKSHELIHSNNRPFVCGTCGKGFTQQAYLKAHQLSHTSQKNYFCKHCPKSFSLKSILKSHELNHSGATHKKRVFPSCDVCKRTFQNKTKLLIHMKRHNVPTPHECEECGKKFTHLCYLKSHQLKHSGEKPFACDLCDKRFSMKSYLRNHQLVHSSIKPYICDVCDKAFTQKATLKSHQLLHTGEKPFQCDMCDKSFTQKGYLKTHQLSHTGEKPFQCDMCDKAFTQKCYLKAHKLTHSDDKPFTCKICDKSFTQKSYLKSHEMIHNDDRPYPYEKPFACDICEKRFSQKGYLKSHMLIHSGERPFVCNICEKSFTQKCYLKAHESTHSDEKPFICLECGKGFTQRCYLKTHQLVHSENKPYECTVCGKKFKQKSNLKIHEQIHSGEKPFACHLCDKRFLQNSTLKTHLLTHTDDSPFSCTMCEKKFSLKTSLTNHMLTHSGDKPFACTICPKRFLLKGSLDSHMRIHTGEKPFECEICHKKFTLKGNLKIHSLIHSEERPYGCTECEKRFVLKSSLESHMRIHTGEKPFACSVCQKAFSFKSMLDAHFRIHTGEKPFSCSECAKSFRLKSTLDAHFRIHTGEKPFSCPHCNKCFSLKGNLSSHILLHTGEKPYACDVCGKKFTLKSSLNTHALIHSGEKPYVCTICNKGFRLKCSLDSHFRSHTGEMPYECNVCDKKFSLRGNLNAHMLIHSGEKPYECTQCDKKFRLKSSLESHTRLHTGIKPFPQKGNLKNHMKIHTRDENLIYNTRMRSFNNIMENMFNGNHFLFPQAEEYSCKLCGCKFKEKCELMFHEMMHGKQLPIPSVLLNTPPKPYPMMMMHPRPPPEPFCIDLTLPSSHN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -