Eonu028032.1
Basic Information
- Insect
- Empoasca onukii
- Gene Symbol
- bab1
- Assembly
- GCA_018831715.1
- Location
- CM032063.1:36195039-36213369[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3e-16 7.8e-13 49.2 0.0 1 43 55 98 55 100 0.95 2 3 0.33 8.5e+02 1.0 0.0 2 24 349 372 349 373 0.80 3 3 2.5 6.5e+03 -1.8 0.2 2 12 405 415 404 422 0.82
Sequence Information
- Coding Sequence
- ATGCTTGAGTCATCTCATGCATGGCTCGGTGCCTCTACCTCTTCTTTGGCCGCAGACAGCTACCAGTACCAGTTGCAGAGCATGTGGCAGAAGTGTTGGAACACCAATCAGAGTCTGGTGCACAACCTTCGCTTCCGAGAGCGTGGACCTCTCAAGTCCTGGAGACCCGAGACCATGGCGGAGGCGATCCTCTCCGTGCTCAAGGAGGGACTGAGTCTCTCCCAGGCCGCTCGCAAGTACGACATCCCATACCCGACCTTCGTCCTCTACGCCAACCGTGTGCACAACATGCTCGGACCCTCTGCTGACGGAGGCACTGATCTGAGACCCAAGGGACGAGGCCGACCACAGCGCATCCTGCTGGGCATCTGGCCGGAGGCTCACATCCAGGGTGTTATCCGGGCAGTTGTGTTCAGGGACCCGCAGCACATCAAGGAGGACCCAATGAGCTTGGGTTATCAGCGACTACAGGTGCTCTCCCCTCTCAACCAGCTCCAACAAGCCAACCTGGAGAGCAAAAGAcagcagcagcaacaacagcagcaacaacaacagcagcagcagcagcaacagcaacaacaacagcaaGAACAACAGTCAGCTCTGTACGGCTCCAACGCCTGCTTGGAAGCGGGCGGAGTGTCTCCCAGCTCTGCGGCGTCTGCTGTGTTTGCGGTTGCGCAGAATCTACGCCAGCAAATGTTAGCGGCTGCGCACCACGGTGGAGACGCTGCCAGCCAGGCTCAGTTTAACAACCTGCTCGCAGCTCACTGCGGCAACGGCATGGGTCTCGGCATCCACTCGCCTCTGCCCAGCCCTGTCAACAGCTCTCCCCGCTCCTCCCCTCTCTCTGCTGCCGCCAACAACAACCTGGAGattgGTTTTGGCCTGGGATATAAACCGTTCAAGTATGAGAACATGAACTTGGGTCGAACGGAACACCTCTTACAAAATGAGATAGAAGATCTTGTGAAAAGACCTCAGCCCTCAAATACCCCCAAAGTAAAAAGTCCTCTGGAGTTGGGATACAAGCCACCGGTCGTGAACGAAAACATGAACAACAGTCTGGACATGACCCGAGTGAGCGAAGCTATCAGCATTCAACGTGCCGGCAACGAAAACGTAAACAACATGAATCTAGCACGAGCAGTCGACAGCATGAACAACATCGCGCGAGCTGCCGACAGTGTGAACAACATGGCACGCTCTACAGAGAGCAACATGGCGCGCGCCGCCGAGAGCATAAACAGTCTAGCGAGGGCTGCGGAGAACATGCAGAACCGAACAACAGAATCTATGAACATGCGCACTGGAGAGATGAACATCGGCCGATCTGCAGAGATGAATGCCATGAACATGAGCCGAGCAAACGATATGAACATTGCACGAGGTGGTCATCTCTTCCAAGATGACATGGAAGATATGGTTAAGCGGCCACAGCCTTCCGACACCCCCAAAGTCAAAGTGGGCATCGGTGTGAGCGGAATGCCGTTCCCCATCAAGACAGAGAACTTTGTGACACCAGCAAGGCCCGAGACTCTGTTCCCAGCTGACATGGACGACCTGGTGAAGAGTCCTCAGCAGACGACGCCCAAGGAGCAACCTCTCTGCTTGCAGGTCGACCAACGCGACTAG
- Protein Sequence
- MLESSHAWLGASTSSLAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGTDLRPKGRGRPQRILLGIWPEAHIQGVIRAVVFRDPQHIKEDPMSLGYQRLQVLSPLNQLQQANLESKRQQQQQQQQQQQQQQQQQQQQQQEQQSALYGSNACLEAGGVSPSSAASAVFAVAQNLRQQMLAAAHHGGDAASQAQFNNLLAAHCGNGMGLGIHSPLPSPVNSSPRSSPLSAAANNNLEIGFGLGYKPFKYENMNLGRTEHLLQNEIEDLVKRPQPSNTPKVKSPLELGYKPPVVNENMNNSLDMTRVSEAISIQRAGNENVNNMNLARAVDSMNNIARAADSVNNMARSTESNMARAAESINSLARAAENMQNRTTESMNMRTGEMNIGRSAEMNAMNMSRANDMNIARGGHLFQDDMEDMVKRPQPSDTPKVKVGIGVSGMPFPIKTENFVTPARPETLFPADMDDLVKSPQQTTPKEQPLCLQVDQRD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -