Este015230.1
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- -
- Assembly
- GCA_949752835.1
- Location
- OX457086.1:65520043-65525304[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2 1.2e+02 4.2 1.2 1 23 1142 1165 1142 1165 0.91 2 12 5.6 5.7e+02 2.1 2.0 1 23 1305 1327 1305 1327 0.92 3 12 0.00093 0.094 14.0 3.1 2 23 1330 1351 1330 1351 0.97 4 12 8e-05 0.0081 17.4 0.3 3 23 1359 1379 1357 1379 0.98 5 12 2.5e-05 0.0025 18.9 5.8 2 23 1386 1408 1385 1408 0.96 6 12 0.037 3.7 9.0 3.4 3 23 1446 1467 1444 1467 0.95 7 12 0.0033 0.33 12.3 0.3 2 23 1478 1498 1477 1498 0.97 8 12 8.1e-06 0.00081 20.5 0.8 1 19 1504 1522 1504 1526 0.95 9 12 1.3e-05 0.0013 19.8 1.3 1 23 1534 1556 1534 1556 0.99 10 12 0.00011 0.011 17.0 7.6 1 23 1562 1584 1562 1585 0.96 11 12 0.028 2.8 9.3 5.4 1 23 1590 1612 1590 1612 0.98 12 12 0.014 1.4 10.3 5.6 1 23 1618 1640 1618 1641 0.93
Sequence Information
- Coding Sequence
- atgtctgaaCTAACACCATGTCCAGTCTGTACTTTATTCCTTCACAAAGGAATGAGTTTAGCTGAACATTTAGATACGCATCCCAAAGAACAAGTTATTAGAGCTTTAGTATCATTAGCTACAATACCATCAACATTAACAGAACAACCGTCAACAGCCACAACagtaacatcatcatcatctacgTCGTCTATGACGGTTGCTACTGGTACAACTTCTTTAAGTAAGACATCAACATTATTACCGCCACCATTAATATCACCATTACCCGTTTTACAATCACTAACATCTGTGACAACAACTGAAAATTGTAATACAATTGCGGTAACATCAGGTACAACATCATCAATAACAGCATTATCTGTAACTATAGCTGCTAATAATTCAGCTTTTGGAAAATGTACCAATgctaatataaaaattggtggtgaccatcaacaacaacagcaacaaaactTTCCAGTTACTAACATACagaatgaattaaattataaagttgctactgataattataataataacaatcagCATTTGAATAGCCAACAACAAACGCATTTACAAgATTTCTTTAATTATCAGAATAAAGCTACTAAAAaattaccaccaccaccaaccTATGGTACGGCAATAAGTCAACTTCGATCTCAAAATAACCAAAGTAATTATGGACGGACACAATCAATGActttatcattaaataattatggAGTAggaagtttttgtaatagtcatAATAATATTCGGCATAATTCAGAAACGTTAGATTATTCTTTACCAAAATCGCAACAGCAGCATGCAtctacaaattcaaatttattattatcacctcgtcataaaaaattacaaaatacaaatactTCAACAACACAATCAACatcatttacatatttttcttcATCAACACCATCATCATCTCCAATAAAAAAACAATCGCACCGCACACCGTCACCTACAATATCTTTAATGCCACAAAATCtttcatcatcaacatcatcaccACCACGACAAGCATCGTCACCATCAGTTTTACGTTATGCTGAAAGCCCAGTATCCGTACAATATATTGAACGTGATAATGGTGATTTTTTGGTACAAGAATCACCCCGACATATTGTACAATGTTTTGAAAAAGATGATGGACAATTTTCGGTTATTGAAAAAGTTATTAGATCACCACCTGCTCTTGTTCAAATAGATGAATTTGTGGAAAATTATAGTGAATCATTagaaacaaatgaaaataataatattatagtagaaaatgacaataaaataaaaacaacagaaaaattaaaagatgaaaataataaaactccTAAAAATGAAGATAATAGTAATTTGCAGCCATGTAcatcaaaatcaacaaaacaacagaatgaaaaaaataatattaaaattgattatgatgatgacgatgataTAATTCTTATTAATGATGAAATACCGCCGAGAAAAAATAATCCAAATGGAATTAAAGTATTAAGTAATGTTAAATTAGATCCCAACGAATCATTAGATATAATggagaatattaataaaattggtgTTCGCTATGGTTCAGAACATTTTTTCCAATCAATTGTTCAATCAATCAAAAAAGAggaagatttaaaaataataactaataatatCATTAACACAACAATCAATGATACTGAAAAAACGATAAATacacaaaatcataatttagatttagataatttaaataaatttaaaaagactacTAATGCTGACGAAATACCATGTTCAAGTACAATAAATACCAGTTGTTCTTCTGGGACAACAAGTGTAATCCGTTTAGCTGGACAAaaagaagatttaaataaaatttcaaataatattgtaCCAACATGTACTGTTGATTTAACAATTAACAAACCATCAACACCTTGTCGTAGTAATGACAATATTAAACCATTtaaaaaacaaccaaaaaagcttgttgttaaatttaaaaatccaattataccgaaaataaatgaaattaatcaaaattctaataatacgacggttgataataatattacagaaattataaatttagatgaacCAGAAGTAATTTTGCCAGATGATAcaccaaataataatttattaaatacaaatattgtaaatgaaataattaaaaaatctgaagggaataataataataacgacgatgataaaataaatattattttagatattaatGAATCAGTATTTTCAGTAACTGAAATAACTGAAAATGATAACGTTGAATGTAAAATGGACATTGGATGTTATAAAATAATAGATCAAAATGAAACTGAAAATGATTCTATGGAAATCGagactgaattaaaaaattgtactaataataaaaatgataaattaataaaaaatttaaataaaattgaaactgTAGCAGTGGTTATAGAATTACCAGAAGATAATTGTAAAACTACAGAATCAGCATTAGGCAATTCTGACAAAAATGATAGACAatcattaaattcatttatattaaattcttcaTCTACATCATTGTCCTCTAAACCATCTACAAGTTCATTTTCATCACAGACTGAGCTACAACGACAAaatccacaacaacaacaaccagtaataaataattataatgattatCCATTTAGTTTTTTGTATACATCAACTGCTACAGggatacaaaataataataatgctattggttctaataatattatagaatcATCACTACAACACAATAGTAATAATACTAATCATAATCAAATATgtacaaataatttaacatcATTAGGTTATCATCAAAATAGTGAAGCAGCAACAACTGATTTATTTCAACaccattataataataatggtgatGCAGCAATATTTCAATCGAATTCACATTTAAATGATTTGGAAGATGAAAAAAGTAGTTACTTAGATTTAGATGCATGTAGTAGCAAACCAATTACTAGCTGTTCAACAACAAGTAATTGTAGTATTGGTGTTGGTGGTATTTTAGATAATCACGATCGTATACCATTAACTGATGCATTAAATATTAGAACAGATGAGAAAATGCCAGCTAAAGGTGAAATATCAGAACAGGAAAGTAATGGTGATATTGAAAATTCATGGAGTCAACCattGTTCAATGAATTAGCCTATAGATTTCCAAATCCTTATGATCATTTTGTGAGCCGTGAGAGTTGGAGTTTAAGTCATGATGAATTCTTTGTACCACACGATTTAACCACATCTGGACGTTCAAAATTCATTCCAGAGAAATCACAACAACAACCTGTTCAAACAATTTCAGAAATAACAAGTACAATTAGTAGTACATCGGGAATAAAAAAGAAATCCCATAAAAAATCTACTGTTACTACATCTACAACTATAGTTGCTAGTACTGCTGCTACACCAGAATCTTCTAATCAACAGCAATCATCATCAGTAGTCTCTGTtaaacgaaaaatatttaaatgtgaaCATTGTGTTTCAATATTTATTCGACTTAGAGACCGTAACAGTCATTTAATTGATCAACATCAATATAAACGTGTGAATCGTCGATTAGTGCGTGAATTACCATCATCAACTGTAACATCAGtatctataaataataatcaaatattaacTGAACCAAAATTAGAACCAATTGattcaacaacaataacaacaaatatatttggtgatggtaatattataaaaacagaACAATCAGAAGATTTAATGGAATTACAAACAATAACATCACCAACATTTGATAATCCAGATACTACTGAAgataaaaaaccaattttacCAGTAGTGTCTACAAAATTAGAACCAACAAATTTTCcacgtactaaatatgattcAATTCGTGCAAATGTTTATCGTAtgctaattaattttaatttatcagttTTACAACAAAAAGGTGGTATAGATGttgaagagaaaaaaatatttgaatcgAAATCATTTTGTTGTTATACATGTAAACGTGATTTTATTAGTGTAAAATTATACGATGAACATTTAGCTGAACATGCTGCTGAATGTTTtacatgtaataaaaaattttcacgtTGGACATATTTTTCATTACATTTAAAACGTCATTTAGGTTGGAAAGATTTTTGGTGTACACAATgtgataaaaaatttgtaatacgTAGTGCACTAATTGAACATATTCGTACACATACTGGTATTGCAccattaaaatgtaatatttgttcaaaatcatttaaacgttattcaaatttaacacaacataaaaaaatgtgtcATAGTAAAAAACCAATACGAACAAAAGAATATGTTTGTTACTGCGGTGAAGTATTACCATCAAAAGCACGTTATTTATGGCACAAAGAAATTCATGATCCAAAACCAAAATGTTGCCCATGGTGTCGGGATCGTTTTGTACATGCAAACAGTTTACGTCGTCATATACGTTTAATGCATTccgataaattttcatattctgAACCAGTTGAATGTACAATTTGTAATCAAGTTTATGCTAAATCTAGTCTAAAAAGTCATATGACGACACATTCAATGGATACCCAACATGAATGTCCAATATGTAATAAATCATTTAGTACtaaatggaatttaaaaatacatagcTGGGTACATGCTAGTCGAACAGCAAAACCATTTAAATGTGAATATTGTACAAAAGCATTTGTACGagaaattgattataaaaatcataTGAATTCACATAAACAAATACGTCCGTATACATGTGAATATTGTGGTTGTAAATTTATacgtaaatataattatatgcgTCATCGCCGTGAACATCATGGTCAAAAGAAATTTAGTTGTGATTTGTGTAGTAAATTATTTCATcgtcattattatttaattgaacatCGTCGTATACATACTGGTGAAAGACcatttttatgtacaatttgTGGTAAAagttcaacaacaaaaacaaatcataataaacatttaaaaattcatcattCAAGGGATCCATTTACATCAGAATCATAa
- Protein Sequence
- MSELTPCPVCTLFLHKGMSLAEHLDTHPKEQVIRALVSLATIPSTLTEQPSTATTVTSSSSTSSMTVATGTTSLSKTSTLLPPPLISPLPVLQSLTSVTTTENCNTIAVTSGTTSSITALSVTIAANNSAFGKCTNANIKIGGDHQQQQQQNFPVTNIQNELNYKVATDNYNNNNQHLNSQQQTHLQDFFNYQNKATKKLPPPPTYGTAISQLRSQNNQSNYGRTQSMTLSLNNYGVGSFCNSHNNIRHNSETLDYSLPKSQQQHASTNSNLLLSPRHKKLQNTNTSTTQSTSFTYFSSSTPSSSPIKKQSHRTPSPTISLMPQNLSSSTSSPPRQASSPSVLRYAESPVSVQYIERDNGDFLVQESPRHIVQCFEKDDGQFSVIEKVIRSPPALVQIDEFVENYSESLETNENNNIIVENDNKIKTTEKLKDENNKTPKNEDNSNLQPCTSKSTKQQNEKNNIKIDYDDDDDIILINDEIPPRKNNPNGIKVLSNVKLDPNESLDIMENINKIGVRYGSEHFFQSIVQSIKKEEDLKIITNNIINTTINDTEKTINTQNHNLDLDNLNKFKKTTNADEIPCSSTINTSCSSGTTSVIRLAGQKEDLNKISNNIVPTCTVDLTINKPSTPCRSNDNIKPFKKQPKKLVVKFKNPIIPKINEINQNSNNTTVDNNITEIINLDEPEVILPDDTPNNNLLNTNIVNEIIKKSEGNNNNNDDDKINIILDINESVFSVTEITENDNVECKMDIGCYKIIDQNETENDSMEIETELKNCTNNKNDKLIKNLNKIETVAVVIELPEDNCKTTESALGNSDKNDRQSLNSFILNSSSTSLSSKPSTSSFSSQTELQRQNPQQQQPVINNYNDYPFSFLYTSTATGIQNNNNAIGSNNIIESSLQHNSNNTNHNQICTNNLTSLGYHQNSEAATTDLFQHHYNNNGDAAIFQSNSHLNDLEDEKSSYLDLDACSSKPITSCSTTSNCSIGVGGILDNHDRIPLTDALNIRTDEKMPAKGEISEQESNGDIENSWSQPLFNELAYRFPNPYDHFVSRESWSLSHDEFFVPHDLTTSGRSKFIPEKSQQQPVQTISEITSTISSTSGIKKKSHKKSTVTTSTTIVASTAATPESSNQQQSSSVVSVKRKIFKCEHCVSIFIRLRDRNSHLIDQHQYKRVNRRLVRELPSSTVTSVSINNNQILTEPKLEPIDSTTITTNIFGDGNIIKTEQSEDLMELQTITSPTFDNPDTTEDKKPILPVVSTKLEPTNFPRTKYDSIRANVYRMLINFNLSVLQQKGGIDVEEKKIFESKSFCCYTCKRDFISVKLYDEHLAEHAAECFTCNKKFSRWTYFSLHLKRHLGWKDFWCTQCDKKFVIRSALIEHIRTHTGIAPLKCNICSKSFKRYSNLTQHKKMCHSKKPIRTKEYVCYCGEVLPSKARYLWHKEIHDPKPKCCPWCRDRFVHANSLRRHIRLMHSDKFSYSEPVECTICNQVYAKSSLKSHMTTHSMDTQHECPICNKSFSTKWNLKIHSWVHASRTAKPFKCEYCTKAFVREIDYKNHMNSHKQIRPYTCEYCGCKFIRKYNYMRHRREHHGQKKFSCDLCSKLFHRHYYLIEHRRIHTGERPFLCTICGKSSTTKTNHNKHLKIHHSRDPFTSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -