Basic Information

Insect: Empis stercorea
Gene Symbol: RREB1
Assembly: GCA_949752835.1
Location: OX457087.1:48099812-48106243[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0074 0.74 11.2 0.6 1 21 257 277 257 279 0.96

2 14 0.00042 0.042 15.1 0.2 1 23 289 311 289 311 0.98

3 14 2.9e-05 0.003 18.7 7.5 1 23 317 339 317 339 0.98

4 14 0.13 13 7.2 3.4 2 20 536 554 536 555 0.94

5 14 0.84 85 4.7 0.1 1 21 618 638 618 639 0.88

6 14 0.011 1.1 10.6 0.1 1 23 862 884 862 884 0.97

7 14 0.00021 0.022 16.0 0.9 1 23 894 916 894 916 0.99

8 14 0.001 0.11 13.8 2.0 1 23 922 945 922 945 0.97

9 14 0.0012 0.12 13.7 2.1 1 23 1287 1310 1287 1310 0.95

10 14 0.00011 0.011 16.9 0.3 2 23 1610 1631 1609 1631 0.97

11 14 0.18 18 6.8 6.3 1 23 1637 1660 1637 1660 0.97

12 14 0.53 53 5.3 4.8 1 23 1740 1763 1740 1763 0.97

13 14 0.011 1.1 10.7 0.5 3 23 1813 1833 1811 1833 0.96

14 14 0.0017 0.17 13.2 4.8 1 23 1839 1861 1839 1861 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0074	0.74	11.2	0.6	1	21	257	277	257	279	0.96
2	14	0.00042	0.042	15.1	0.2	1	23	289	311	289	311	0.98
3	14	2.9e-05	0.003	18.7	7.5	1	23	317	339	317	339	0.98
4	14	0.13	13	7.2	3.4	2	20	536	554	536	555	0.94
5	14	0.84	85	4.7	0.1	1	21	618	638	618	639	0.88
6	14	0.011	1.1	10.6	0.1	1	23	862	884	862	884	0.97
7	14	0.00021	0.022	16.0	0.9	1	23	894	916	894	916	0.99
8	14	0.001	0.11	13.8	2.0	1	23	922	945	922	945	0.97
9	14	0.0012	0.12	13.7	2.1	1	23	1287	1310	1287	1310	0.95
10	14	0.00011	0.011	16.9	0.3	2	23	1610	1631	1609	1631	0.97
11	14	0.18	18	6.8	6.3	1	23	1637	1660	1637	1660	0.97
12	14	0.53	53	5.3	4.8	1	23	1740	1763	1740	1763	0.97
13	14	0.011	1.1	10.7	0.5	3	23	1813	1833	1811	1833	0.96
14	14	0.0017	0.17	13.2	4.8	1	23	1839	1861	1839	1861	0.99

Sequence Information

Coding Sequence: atgacatcAGTAACAACTCCaacaactaaaattaaattagaaatggaTCGTCGTCCATCAACAGCATCATCAGAATCATCAGTAGAACCAATGGATTTAGGTAGAACACCAacaccaaaaaagaaaatacaaaccaaagataataatgatgaatcaataaataataataataataaatcattaaataatattgattcaGAAGAAAATACATATGATTCTGAGGAAcatgaaaatgaatatttacaaaatcaacaacagaaaaataataataatataacaacaaatttaaaattatcaaataataataataagaaattacaTCGTCAACGaagtaacaataataataataataataataatcatcatcatcatcatcatcgagAAAAACGTATTGTACAAATTGAAGAAAATGATAATCCACATTCGCTACGTAAAAAATTTCGAATCAGTACTCCGaatcgaaataataataatttaataaatcataaaaataataataataataatttaatattaacaaaatgtaataataataataataacaataatgaagaagatcaacaaaaaattgataatatgtCAAAATCTGAACAACAAACAACAAcgacaataacaaaaaatgatgGTGGTTGTATTGGTAGTGGTGATGAAGATCGTACAAATAATGAATCTGGTTTTGTTGATACAAGTGGCCATAATATTAATTCATCACCAACATCAACATCATCTAGTCCAGAGTCTGGTATTGGTGAACGTGATGATGTTAAATATGTTTGTCCAATATGTGAAGTTGTATCAGCAACACCACATGAATTTACCAATCATATACGATGTCATAATTATTCATCTGGTGATTCAGAGAATTTTACATGTCGAATTTGCTCAAAGGTCCTTTCGTCAGCATCATCTCTAGATCGTCATGTATTAGTACATACAGGTGAACGTCCATTTAATTGTAAGTATTGTCATTTAACATTTACAACAAATGGTAATATGCATCGACATATGCGCACCCAtaaacaacatcaacaacaacatcaacgtaataataataataataataataataacagctCAACAGTAACAACAAATGGAAGTGACAGTGGAGGAGacaataaaactaataataataataataataaaataaatagtggcaacaccaataataataataataataataattcggGTGGTAGTGGCAATAGCAGTAGTAATGGTGGCGAAAGTTATGAAAGTGATGGTTGCTCAACAGATTCAAGTATATCAGCTGGAtcaaattttatagttaaaacaaaaaatgttaataatatcattaatactaataataatattattataaataattataataaacgtaAAAGTAcagatgatgataatgatggtGAAAATATATTAGGTGGTATTATAAAACGTcgtttaaaaacaaatattaataataatataattaatgacaatgatattattaatgcaaataataataataataataatgataatcatacattaatatcaaaattttgttgtCCAGTTTGTAATCGtaatgattttataaatatgcTAACATTAGGTACACATATGGATTGTGAACATTCAGATATACCAGCTAAATGTCGTGAATGTGATGTTGTATTTAAAACACATAAACAATTAAATGGTCATCGTTGttgtacaacaacaacaacatcaattgcaaataataataataataataataaattaaatattccacATGGTTTTCGAGATTTAACAGTTGTGGATTTCTCAAGTGAGAAATTTCCATTAATTGCTAAATCTTTATGTGAACAAACATTACGTacatcaataaatattaataataataataatccaaaaTTTGATTGTTCAAAATGTTATAGAGAATTTACTAGTGAAAATGCAATTGATATACATATTAAAGAATGTtattataatgataaaaatacatcatcattatcatcaacaaataataataaattaattgcatCATTACCAACAACAATATTACCACATGATTTTTCAAtgcgtaaaaaaaatataagaaaacgTACACAATCAGAAGGTAGTGAAAGTTCAATAGACggtgatgatgataataataataataataataataataatgatgatgatgttaaTGTAGTAAGTCGTAATCGTGATGAATTTTTTGCCCATTtagatttacaaaataaatcagCCAGTAGCTTAATGTCATCACCACGTACAGAGAAATCAGATTATAAATCTGATTTGGATAAAACACCGAAAACAACAGCAACAGAAATATCAAATCATCActtgaataataataacaatattaatagTTATCTTAATCATCATCAGAATAAtcaattatcatcatcattttcattGTTACAACAGCAACAAGttttacaacaacaacagcatgATTCAAAAGATTTAGCTGATATTCAGTCAATTTTAAATGTTACATCATCATCAAATAATTTCTtacgaaattttgaaaataatgttaatacaCCGAGCAGTGAATGTGGTTATGGTAAGGATGAAGAAGAAGCACAAGATGCATTTACATCAGAATTTCGTAAAATGAAATTACGTGGTGAATTTCCATGTAAATTATGTACTGCTGTATTTCCAAATTTACGTGCTTTAAAGGGTCATAATCGTATTCATATTAGTGCTGCTGGTGCATCAGGACCATTTCGTTGTAATATGTGTCCATATTCGATACATGATAAAGCAGCATTGGTACGACATATGCGTTCACATAATGGTGATCGTCCTTATGAATGTGCTGTTTGTAATTATGCATTTACAACAAAGGCAAATTGTGAACGTCATTTAAGGAATCGTCATGCTAAAACAACACGTGAAGATGTTAAACGTGCCATTATTTATCATCCATCAGAAGATTCAAGTTGTGATGATCCaactaaaaaattacatttattttcatCACCGGAATTTGATAGTGATGACGTTGTTGAAATAAATCCACCACCAAAAGATCGATCAACTCCAGTTTCACATCTTAAAGAAATGCTACAAAATGATAATAAGTCAAtgaaaatacaagtaaaaagctTAGAGAAACTTATTGATAAAAGCTCAATGTCCAGTTATGGAAATTATGATGATAGAGAAGAAAAAGAATTGGACCATGAATCACCAAGCGATATATCACATCCAATAGATCTGAGTATGGACGTTTTAGATTTgagtaaaaaatcaacaaaagtAGCAGAAGAAAAACTTTctgaaaatgataatataacAGAGCATCAAAAAATTGATATGGATTTGTTGCAGAAAAATCATCAAATACTACTTGCTCAACAACAATTCCTTAGTGAGAATTTCCCAAAAATTGATTCGGCTCAGTATTTACAATTTTCGCAGCTATGCAGTAATTTAGTATTTCCACAATTTCATCCAGCATTCTTCTTGCAAAATACATTCCTTCCAAATAATCTTgctgattttaataaatttgcgCCCTTATTAGGTGCTGGAATATTTGGTAATCCACCAGCTTTTAACATACCGTCAACTTTGAATGGTAATATTCAAAATCAACAGTTTCAACAGTCACAGGAGCCACAGtcaccaacaaaaatttttgaaaatcccATTCAAAAATTAACATCACCTTCACCAGCACAGTTGTTGCCAAAATCATTAACACCTACACAACATAATATATCACATCATTTGTCACCATCAGAACAATCAACACCAAGTCAACAACACCAGCAACAACCACAGACCCAGCCAATATCCCAAccaacacaaaataataatggacCAGTTAAAATGGTAATTAAAAATGGTGTCCTTATGccaaaacaaaaacaacgtCGCTATAGAACTGAACGTCCATTTGCTTGTGAACATTGCTCAGCTCGTTTTACACTTCGTTCAAATATGGAACGTCATATTAAACAACAACATCCCCAACAGTGGGCACAACGTCAACGTACTGGGCAACATGTTATCCGAGGACGAGGCAACAGTTCTAATGTAATGTCACAAATTTCATCACCTCATTTGAGAAATTCATCAATAccagttaataataataatggtagtaatACTTTGTCACCATCAAATCACTTTAGTGGTATTTCTGATCAAGTTAAATATGCAATTCTTGCTCAACAGTTAAAAGCCCGTAAAGATACTGATATCCTTCAACAAGCTCTTTCACAAGGTTCAAATGTTAATAATTCTTTTAGCAATacaataaaaagtaataataataacaatagtaCTAGTGTCGAAGATGATgatccaaaattaattattgacgAAGATGATGAAGATTATGAAGAAGAACAGGATGATGATGAAGTTGTCTTTGAAGAATCAAAACCACAAGATCTTTCAAATATAACAGAAATAACTGCAAATAAAACAGCAGCTAAAAAAGTAGCTGAAACCATATTAGAGCAAGCTATAAAAGCAggtaataatttatcaaaaaaatgtttaaatattgaAGATCGTAATGCAAGTAAagattttgaattgaaaatagCAAATACTATGATTGCAAGAGCTGAATCGgttggtaaatatttaaaagaagtTGCTAGCTCTCCGTTTAAAGATGATCAACCAGATTTAGTTTCAGTTTCAAAATTAGTTGATAATGCTACAATTCCACtatcttttaataattatttccggcCAAGTGATGTTGCCAACCAAATGGAACAAAGTGACGAAGAAGGATTAGTTGCATCTGGTAGTGCATCTGATAATAATTCTGGTCCAGAAGAAGCTTTAAATAACGCCAATCCAGATCAAAAGAAAAAATCTGCATATAGTTTAGCACCAAATCGTGTATCATGTCCATATTGCCAACGTATGTTTCCTTGGTCAAGTTCATTGCGTCGACATATACTCACACATACAGGTCAAAAGCCATTTAAATGTTCACATTGTCCATTATTATTTACAACGAAGAGTAATTGTGATCGTCATTTGTTACGGAAGCATGGCAATGTTGAATCAGCTGTATCATTATATGTTCCAATTGAAGATATCCCAGATCCAATTCCAAAACCAAAAGCTATTGCAGAAGCAAACGCTGCTGCTGCTGCAGCAGCAATGATTACAAATGAAGAAATTGAAATGccaaaaacaaattcaattaatttgccTATTGCACCAATAAATCCAAATATTCAAAAATCTATTGTTGAACCACAAATCATATCATCTGCAGATTTACCATATAAATGTCATTTGTGCGATAGTTCGTTTAGTGAACGTAATCAATGTTTGGATCATATAAAAATGTCACATGTACAGGAATTTGCTCTACTATTGGCTAAAGGAGCAATTGATACAGAAGCTGAACACAATAATCAAATACAATCTAATGAAGATGATGAACGTCGGGCTGATGATGGTCGTGGTAAATATCCAGATTATGCTAATCGTAAAGTAATTTGTGCATTTTGTGTAAGAAGATTTTGGTCTACTGAAGATTTAAGACGTCATATGAGAACACATTCTGGTGAACGGCCATTTCAATGTGAAATCTGTTTAAGgaaatttacattaaaacatagcATGTTACGTCATATGAAAAAACATAATGGTAATCATCATAATAATATGCAAACATTTACAAATAGTGGTTCAGATATATCAGATGATGAACAAATACCAGGCAATGGACAAATAAATAACACAACTGgttcaacaaataataatactaatattaataatatgatGGTATCAAATTCATTACGTAATCATAAAATTCATGATATATTAAGTAAAGCAAATGTTGGATGGCGTAATCAAATGGGACGTTATGGTTTAATTGGTGAACATCAAAAAGAAAACATTGCATTACAACAACAAATTAAAACGGAACTAAATtgtgatgataataatattggACAAGTAAATGGTGGTATTACATCAACACCAAATTCAGATTTAATTGGTAATTTATTAGGTATAAGTGATCaaggaattttaaataaattattatcatcagCTGATGAGGCTGCTAAATTTTTGGgtattgataaataa
Protein Sequence: MTSVTTPTTKIKLEMDRRPSTASSESSVEPMDLGRTPTPKKKIQTKDNNDESINNNNNKSLNNIDSEENTYDSEEHENEYLQNQQQKNNNNITTNLKLSNNNNKKLHRQRSNNNNNNNNNHHHHHHREKRIVQIEENDNPHSLRKKFRISTPNRNNNNLINHKNNNNNNLILTKCNNNNNNNNEEDQQKIDNMSKSEQQTTTTITKNDGGCIGSGDEDRTNNESGFVDTSGHNINSSPTSTSSSPESGIGERDDVKYVCPICEVVSATPHEFTNHIRCHNYSSGDSENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQQQHQRNNNNNNNNNSSTVTTNGSDSGGDNKTNNNNNNKINSGNTNNNNNNNNSGGSGNSSSNGGESYESDGCSTDSSISAGSNFIVKTKNVNNIINTNNNIIINNYNKRKSTDDDNDGENILGGIIKRRLKTNINNNIINDNDIINANNNNNNNDNHTLISKFCCPVCNRNDFINMLTLGTHMDCEHSDIPAKCRECDVVFKTHKQLNGHRCCTTTTTSIANNNNNNNKLNIPHGFRDLTVVDFSSEKFPLIAKSLCEQTLRTSININNNNNPKFDCSKCYREFTSENAIDIHIKECYYNDKNTSSLSSTNNNKLIASLPTTILPHDFSMRKKNIRKRTQSEGSESSIDGDDDNNNNNNNNNDDDVNVVSRNRDEFFAHLDLQNKSASSLMSSPRTEKSDYKSDLDKTPKTTATEISNHHLNNNNNINSYLNHHQNNQLSSSFSLLQQQQVLQQQQHDSKDLADIQSILNVTSSSNNFLRNFENNVNTPSSECGYGKDEEEAQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHISAAGASGPFRCNMCPYSIHDKAALVRHMRSHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTREDVKRAIIYHPSEDSSCDDPTKKLHLFSSPEFDSDDVVEINPPPKDRSTPVSHLKEMLQNDNKSMKIQVKSLEKLIDKSSMSSYGNYDDREEKELDHESPSDISHPIDLSMDVLDLSKKSTKVAEEKLSENDNITEHQKIDMDLLQKNHQILLAQQQFLSENFPKIDSAQYLQFSQLCSNLVFPQFHPAFFLQNTFLPNNLADFNKFAPLLGAGIFGNPPAFNIPSTLNGNIQNQQFQQSQEPQSPTKIFENPIQKLTSPSPAQLLPKSLTPTQHNISHHLSPSEQSTPSQQHQQQPQTQPISQPTQNNNGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQQWAQRQRTGQHVIRGRGNSSNVMSQISSPHLRNSSIPVNNNNGSNTLSPSNHFSGISDQVKYAILAQQLKARKDTDILQQALSQGSNVNNSFSNTIKSNNNNNSTSVEDDDPKLIIDEDDEDYEEEQDDDEVVFEESKPQDLSNITEITANKTAAKKVAETILEQAIKAGNNLSKKCLNIEDRNASKDFELKIANTMIARAESVGKYLKEVASSPFKDDQPDLVSVSKLVDNATIPLSFNNYFRPSDVANQMEQSDEEGLVASGSASDNNSGPEEALNNANPDQKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSLYVPIEDIPDPIPKPKAIAEANAAAAAAAMITNEEIEMPKTNSINLPIAPINPNIQKSIVEPQIISSADLPYKCHLCDSSFSERNQCLDHIKMSHVQEFALLLAKGAIDTEAEHNNQIQSNEDDERRADDGRGKYPDYANRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHNGNHHNNMQTFTNSGSDISDDEQIPGNGQINNTTGSTNNNTNINNMMVSNSLRNHKIHDILSKANVGWRNQMGRYGLIGEHQKENIALQQQIKTELNCDDNNIGQVNGGITSTPNSDLIGNLLGISDQGILNKLLSSADEAAKFLGIDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00643542;
90% Identity: -
80% Identity: -