Este008862.1
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- -
- Assembly
- GCA_949752835.1
- Location
- OX457085.1:79231639-79233551[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00079 0.08 14.2 0.5 2 23 197 219 196 219 0.95 2 10 0.16 16 7.0 0.4 6 23 228 245 228 245 0.99 3 10 0.00071 0.071 14.4 0.8 1 23 251 274 251 275 0.95 4 10 0.0023 0.24 12.7 0.7 1 23 282 305 282 305 0.97 5 10 0.00097 0.098 14.0 0.6 2 23 313 335 312 335 0.94 6 10 0.056 5.7 8.4 1.1 3 23 343 363 342 363 0.96 7 10 0.14 14 7.1 0.1 2 23 372 393 371 393 0.94 8 10 6.3e-05 0.0063 17.7 2.9 1 23 400 423 400 423 0.96 9 10 3.3e-06 0.00033 21.7 0.9 1 23 428 450 428 450 0.99 10 10 1.3e-05 0.0013 19.9 0.6 1 23 456 479 456 479 0.97
Sequence Information
- Coding Sequence
- atgatttgCCGGCTGTGTTTAAAtaattctgaaaaatatttagaatttttcgaTGAACACGGATTATTGCTAAATTTGTCTTCAATTGTatcgaaatatttttggtttgagccACAAAAAAATGATCCAATTTCAAATACAATTTGTACTGAGTGTTGGAGTTATGTTGaaaatttccacaaattttatatatcaattgaAGAagcacaaaataatataaacattattgcATTCAATGAAGATGAAGACAATAAAGATTCGATATTAAAATTTGACAACtctaaagtttttaataatactGAGAATGAGGATATAAGTTTATTATTGAACAAGAATAATTCTAATAGTTCATCACattgtaatattaatatgaatttaGAATTAGAATCTAAGCATATTATTATagACTCATTATTAGATCCATTAGAAAATGAagcacaaaaattatttgatgtCGAAATTCGTGAAAATCATCCAAAGAAATCAAAGTTATCAGAAAACAATAAAACTGTTAAACAAtgtaaaataactaaaaaagcAAATTTAGATATTGATCACGATGAAAAGATTTCatcatttatgaaattaatCTGTGATGAATGTAAAGAAGAATTTCCTagatttacattattaaaaaaacatggACAAACAAAACATAATCATACTGGATATGCGACATGttgtaataagaaattttataaaagaatttttttattagaacatATAAATGTACATTTAAATCCGAATTATTTTAGgtGTGAAGAATGTAATAAATCATTTGGTTCAAGAAGGGGTATTGAAAATCATAATCTAACCCGTCATCAAACAAATGaaacaaaattctataaatgTGATTTATGTCCTcgaaaatatgttataaaatatttattagatcaACATTACAAAATAAGTCATACAGATATTGAGAAGAAATGGAAATGTGATATCTGCGATAAAggaTTTGTTACGAAAAATCGTATGATCACCCATAAAAACTATTTGCATAAAAATGCATATTCAAAAATATGTGATATTTGTGCAAAAGTTTGTCGTAGTAAATCAATTTTTGATAAACATATGCTAGAACATAATGGTATTATGCAACCAAAACTACAATGTGAAAAATGTGAAGCATGGCTTAAGAATCCATTAAGTTTAAAAAGACATATGATAGGACATAAAGAAGAAAATGTTAAACATACATGTAATATATGTGGTAAATGTGCTGCATCTAAATTTGCATTAAAAAATCATCTTCGATATGTTCATACAGAAGCCATTTTTAAATGTGCTGTTTGTGATAAATCATTTAAGAAACCAATAAGACTAAaggaaCATATGTCTACACATACTGGTGAAATATTATACACTTGCACTTTATGCCCGAAAACTTTTATTTCAAATGCAAATATGTGGTCGCATAAGAAAAAAGCTCACCGAGATCAATGGGAAACTGATAGAAAAAATCGAAAAGCACCACCCGAATcgaatttaaaacaaaatatttaa
- Protein Sequence
- MICRLCLNNSEKYLEFFDEHGLLLNLSSIVSKYFWFEPQKNDPISNTICTECWSYVENFHKFYISIEEAQNNINIIAFNEDEDNKDSILKFDNSKVFNNTENEDISLLLNKNNSNSSSHCNINMNLELESKHIIIDSLLDPLENEAQKLFDVEIRENHPKKSKLSENNKTVKQCKITKKANLDIDHDEKISSFMKLICDECKEEFPRFTLLKKHGQTKHNHTGYATCCNKKFYKRIFLLEHINVHLNPNYFRCEECNKSFGSRRGIENHNLTRHQTNETKFYKCDLCPRKYVIKYLLDQHYKISHTDIEKKWKCDICDKGFVTKNRMITHKNYLHKNAYSKICDICAKVCRSKSIFDKHMLEHNGIMQPKLQCEKCEAWLKNPLSLKRHMIGHKEENVKHTCNICGKCAASKFALKNHLRYVHTEAIFKCAVCDKSFKKPIRLKEHMSTHTGEILYTCTLCPKTFISNANMWSHKKKAHRDQWETDRKNRKAPPESNLKQNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -