Este001295.1
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- -
- Assembly
- GCA_949752835.1
- Location
- OX457085.1:15898680-15902753[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.073 7.3 8.0 0.3 1 23 35 58 35 58 0.92 2 21 0.0037 0.38 12.1 3.4 1 23 210 232 210 232 0.98 3 21 0.00026 0.027 15.7 1.6 1 23 240 265 240 265 0.97 4 21 0.21 21 6.6 2.8 1 23 271 294 271 294 0.96 5 21 0.0089 0.9 10.9 2.9 1 23 351 373 351 373 0.98 6 21 0.0058 0.59 11.5 1.3 1 23 381 406 381 406 0.97 7 21 0.052 5.2 8.5 3.2 1 23 412 435 412 435 0.96 8 21 0.0011 0.11 13.8 3.4 2 23 442 463 441 463 0.96 9 21 0.00073 0.073 14.3 4.5 1 20 468 487 468 490 0.94 10 21 0.073 7.3 8.0 0.3 1 23 522 545 522 545 0.92 11 21 0.0037 0.38 12.1 3.4 1 23 697 719 697 719 0.98 12 21 0.00026 0.027 15.7 1.6 1 23 727 752 727 752 0.97 13 21 0.05 5 8.6 4.1 1 23 758 781 758 781 0.97 14 21 6.3 6.3e+02 2.0 1.3 2 20 814 835 813 837 0.88 15 21 0.055 5.6 8.4 1.8 1 23 838 860 838 860 0.97 16 21 0.022 2.2 9.7 2.4 1 23 868 893 868 893 0.96 17 21 0.052 5.2 8.5 3.2 1 23 899 922 899 922 0.96 18 21 0.0013 0.13 13.6 3.4 2 23 929 950 928 950 0.96 19 21 0.00073 0.073 14.3 4.5 1 20 955 974 955 977 0.94 20 21 0.00025 0.026 15.8 0.3 1 23 983 1005 983 1005 0.98 21 21 0.0031 0.32 12.3 0.4 1 23 1011 1034 1011 1034 0.98
Sequence Information
- Coding Sequence
- ATGGAGATAGAATTTTGCCTGGTAAATAAAAATCTTCCAATGCAGCAAGAACGTTGTATAAAATTTGGTGAAATAATATTATCTGATgatggtaaatttaaatttgcctGTAATTTATGTGAACAGGTATTTTCAAAAAGCTTATTATTCATTGGTCATGCAAATAAAAATCATGTAAATGTAGAAATAGAATCCATAAAAGAGGCTTTTTTAACAAATCTTAATGATTTCGAGTCAATTGAagattattcattaaaaaaattagatgtTAAAATTGAAACATCCTCAAATTACGATAATGAAGATGTTTTAAGTACGAATATATATAATGAAGAAGATAATGAAGATGTTTTAAGTACGGATATTGAAGACACTAGGAATTCccaaattgaagaaaaaatatcaaCTTCGACTTTACCACAAAGTACTAAAGTTAAACAtggaaaaaacaaattaataaagaatATATCACAAAATTCTTGTTCTActaatgaaaaacaaataataaaaaagaataaaattcgTTTATTAAATGGTAAAGCAAGTTGGCAATGTCCATTatgtaatgtaatattaaactGTAATTCTAAATATGGTCACTTAAATAGGCACAATGGTAAAGTAACATTTAAATGTAGGCATTGTGGTGAAGAATTTGGTACAAAATCTCGTAGACGAAATCATGAAAGAATTCATACTGGTGAATCTGATCGTACATTTAAATGTACAGAACCAGattgttcaaaatattttaaatcaaaggATACAGTAAGAACTCATATAAAACGTGATCATTTAGGTATACGTGAACATAAATGTGATTATTGTGAacaacgattttttttaaaagctgaAAAAATTAATCACGAACGATCAAATCATACAAAGGAGAAACCAGACACTAAGATGGTTGAAGACACCAGGAATTCccaaattgaagaaaaaatatcaaCTTCGACTTTACCACAAGATAGTTGGAAATGTCCATTatgtaatgtaatattaaaatgtaaatctAAATATGATCACATAAATAGGCACAAAGGTACATTTAAATGTAGGCATTGTGGTGAAGAATTTGGTACAAAATATCGTAGAGAAAATCATGAAAGAATTCATACTGGTGAATCTGATCGTACATTTAAATGTACAGAACCAGAttgttcaaaatattataaatcaaaggATATATTAAGAACTCATATAAAACGTGATCATTTAGGTATACGTAAACATAAATGTGATTATTGtgaaaaacgattttttttaaaagctgaAAAAATTAATCACGAACGATCAAATCATACAAAAGAGAGACCATGTATTTGCGAAATATGTGGTTTAAGTTTTCAtgttcaacaaaaattaaaacaacatATGCAAAATCATAATGAACTAAAATTTCCATGTGATAAAtgtgataaaaaattttatgttaaaaaaaatttaaaacaacatCAAATTTGTCATAGTAATTTAAAACCATATTCATGTGAAATATGTTCACAAGAACGTTGTATAAAATTTGGTGAAATAATATTATCTGATgatggtaaatttaaatttgcctGTAATTTATGTGAACAGGTATTTTCAAAAAGCTTATTATTCATTGGTCATGCAAATAAAAATCATGTAAATGTAGAAATAGAATCCATAAAAGAGGCTTTTTTAACAAATCTTAATGATTTCGAGTCAATTGAagattattcattaaaaaaattagatgtTAAAATTGAAACATCCTCAAATTACGATAATGAAGATGTTTTAAGTACGAATATATATAATGAAGAAGATAATGAAGATGTTTTAAGTACGGATATTGAAGACACTAGGAATTCccaaattgaagaaaaaatatcaaCTTCGACTTTACCACAAAGTACTAAAGTTAAACAtggaaaaaacaaattaataaagaatATATCACAAAATTCTTGTTCTActaatgaaaaacaaataataaaaaagaaaaaaattcgtTTATTAAATGGTAAAGCAAGTTGGCAATGTCCATTatgtaatgtaatattaaactGTAATTCTAAATATGGTCACTTAAATAGGCACAATGGTAACGTAACATTTAAATGTAGGCATTGTGGTGAAGAATTTGGTACAAAATCTCGTAGACGAAATCATGAAAGAATTCATACTGGTGAATCTGATCGTCCATTTAAATGTACAGAACCAGattgttcaaaatattttaaatcaaaggATACAGTAAGAACTCATATAAAACGTGATCATTTAGGTATACGTGAACATAAATGTGATTATtgtgaaaaacaatttttttttaacgctGAAAAAATTAGACACGAACGATCAAAACATACAGAAGAGAAACCAGACACTAGGATGGTTGAAGACAGCAGGAATTCccaaattgaagaaaaaatatcaaCTTCGACTTTACCACAAGATAGTTGGAAATGTCCATTatgtaatgtaatattaaaatgtacATCTAAATATGATCACATAAATAGGCACAAAGGTACATTTAAATGTAGGCATTGTGGTGAAGAATTTGGTACAATATATCGTAGAGAAAATCATGAAAGAATTCATACTGGTGAATCTGATCGTACACATAAATGTACAGAACCAGAttgttcaaaatattataaatcaaaggATATATTAAGAACTCATATAAAACGTGATCATTTAGGTATACGTAAACATAAATGTGATTATTGtgaaaaacgattttttttaaaagctgaAAAAATTAATCACGAACGATCAAATCATACAAAAGAGAGACCATGTATTTGCGAAATATGTGGTTTAAGTTTTCAtgttcaacaaaaattaaaaacacatATGCAAAATCATAATGAACTAAAATTTCCATGTGATAAAtgtgataaaaaattttatgttaagaaaaatttaaaacaacatCAAATTTGTCATAGTAATTTAAAACCATATTCATGTGAAATATGTTCAGTAAATTTTCCACGTTTAAGTgcatataaaatacatttaaaatcacattcagatattaaaaaatatgtttgtaGAATTTGCAGTaaagattattataatatatctGGAATAAGAAATCATATGAAATCTgcacataaaataaaatataataaaataaatgttataagGAGAACAGAAAATGAAACTAAAGAAAATGATTAA
- Protein Sequence
- MEIEFCLVNKNLPMQQERCIKFGEIILSDDGKFKFACNLCEQVFSKSLLFIGHANKNHVNVEIESIKEAFLTNLNDFESIEDYSLKKLDVKIETSSNYDNEDVLSTNIYNEEDNEDVLSTDIEDTRNSQIEEKISTSTLPQSTKVKHGKNKLIKNISQNSCSTNEKQIIKKNKIRLLNGKASWQCPLCNVILNCNSKYGHLNRHNGKVTFKCRHCGEEFGTKSRRRNHERIHTGESDRTFKCTEPDCSKYFKSKDTVRTHIKRDHLGIREHKCDYCEQRFFLKAEKINHERSNHTKEKPDTKMVEDTRNSQIEEKISTSTLPQDSWKCPLCNVILKCKSKYDHINRHKGTFKCRHCGEEFGTKYRRENHERIHTGESDRTFKCTEPDCSKYYKSKDILRTHIKRDHLGIRKHKCDYCEKRFFLKAEKINHERSNHTKERPCICEICGLSFHVQQKLKQHMQNHNELKFPCDKCDKKFYVKKNLKQHQICHSNLKPYSCEICSQERCIKFGEIILSDDGKFKFACNLCEQVFSKSLLFIGHANKNHVNVEIESIKEAFLTNLNDFESIEDYSLKKLDVKIETSSNYDNEDVLSTNIYNEEDNEDVLSTDIEDTRNSQIEEKISTSTLPQSTKVKHGKNKLIKNISQNSCSTNEKQIIKKKKIRLLNGKASWQCPLCNVILNCNSKYGHLNRHNGNVTFKCRHCGEEFGTKSRRRNHERIHTGESDRPFKCTEPDCSKYFKSKDTVRTHIKRDHLGIREHKCDYCEKQFFFNAEKIRHERSKHTEEKPDTRMVEDSRNSQIEEKISTSTLPQDSWKCPLCNVILKCTSKYDHINRHKGTFKCRHCGEEFGTIYRRENHERIHTGESDRTHKCTEPDCSKYYKSKDILRTHIKRDHLGIRKHKCDYCEKRFFLKAEKINHERSNHTKERPCICEICGLSFHVQQKLKTHMQNHNELKFPCDKCDKKFYVKKNLKQHQICHSNLKPYSCEICSVNFPRLSAYKIHLKSHSDIKKYVCRICSKDYYNISGIRNHMKSAHKIKYNKINVIRRTENETKEND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -