Este008968.1
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- zfy1
- Assembly
- GCA_949752835.1
- Location
- OX457085.1:81343236-81344669[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.031 3.1 9.2 2.1 1 23 34 59 34 59 0.94 2 11 0.00013 0.013 16.7 5.2 1 23 179 201 179 201 0.99 3 11 0.018 1.8 10.0 0.8 2 19 207 224 207 227 0.90 4 11 8.7e-05 0.0088 17.2 2.0 2 23 247 268 246 268 0.96 5 11 0.0089 0.9 10.9 3.1 1 23 273 295 273 295 0.99 6 11 4.2e-06 0.00043 21.4 0.2 1 23 301 323 301 323 0.97 7 11 0.4 40 5.7 0.2 1 23 329 352 329 352 0.85 8 11 0.00091 0.092 14.0 3.3 1 23 358 381 358 381 0.97 9 11 9.5e-05 0.0096 17.1 1.8 1 23 389 411 389 411 0.96 10 11 0.00074 0.075 14.3 1.1 1 23 417 439 417 439 0.97 11 11 3.7e-06 0.00037 21.6 0.7 1 23 445 467 445 467 0.97
Sequence Information
- Coding Sequence
- ATGACAACAAGCataaaagaagaatatttaTGTGACGAATTATCAGAAAATAATCAATCTGATAAATGTGGTGAAGTTTATGTCTCAAAAACTGgaatattttcatgtttttgtattgtttgtaaacaaaaatttgaagaaattgaaaattttacaaaacatattttaaCATTACATCTTGGATTAGTTACTTCAAAAACTGAATATTTATCAAATACTGAAAatcttaataataatgatgtacTTGTGCATTTagatataacaaataatttagaaattaaaatggatcaaaatgaaaatatgactCTAGATACAACAAAatctttagaaaaaaaatgcGATCTATTAGCAAAGAAATATACTGCGTCATCTGATCCACTTGATTTAGAACAAAATGAGAGTAATTTTGAATCAGAATCTGATgaaaaatttgaagaatttcGTGAATGTGATGATTTAAATGAATATAGAGTGAGTACCGATAGCAGTGAAAATTCTGATTCaaatgataatgataaatttgaattactTCCATTCAAATGTGATTTATGTAAAAGATCGTTTCAAAGAAAACATGCATTTCTTGCACATCAAAAACGCCATGAGAAATTAATGCCTAGTTGTGAACATTGTGGGAAATATTTTCGAGAAACAACTGCATATAAGAGTCATAATCAAATATTATGCGCACAAAGAATAAAACGTGGACAAAAATTGAAATCAGAGCTACcagatataaaatgtaaatattgcGAGAAGATTTTTAAGAAAAGTGCATTTTTAAAGAAACATGAAGAAAGACACGAAGATTCACCATTTAAATGCAGTTCTTGTCCTAAACAATTTATGGCAAAACATTTAATGAGAGATCATGAAAGAACGCATACGGGTGAGAAACCATATAAATGTGCATACTGCCCTGTAGCATTTTCTAATGCCACTAACTTAAAACGACATAGTTTAATACATGTTGGTGAACGAACTTATTTATGTACTTTTGGTTGTGGGAAAGCATTTTATGCAGAACGAGAGCGTGCCGGGCATGAACGTAGCCATACAGGTGAAAAACCATTTGTATGTGAATTATGCGGTAGATATTTTGCATTTCAGCATCAATTAAGTTTGCATAAAAAACGTTTCCATATGGATAAGAAAAATTGGCCACATAAATGTAAGCAATGTGATAAAGCTTTTATAATGCCAAATCAATTAAGGGAACATACATTTGTTCATACTGGTGAAAAACCATTTGCTTGTAATTTATGTTCTGGTCGTTTTAGTAAAAAGAGTGGATTAAGAGAACATAGAAAATTACATTCTGGAATTAAAAAGCATATCTGTACTATTTGTAACAAAGCATTTGCTCAAAATGCTGGTTTATACAGTCATATGAAATCCCACTGTGTTCTTAAAGAAGGTgctgaaataaattaa
- Protein Sequence
- MTTSIKEEYLCDELSENNQSDKCGEVYVSKTGIFSCFCIVCKQKFEEIENFTKHILTLHLGLVTSKTEYLSNTENLNNNDVLVHLDITNNLEIKMDQNENMTLDTTKSLEKKCDLLAKKYTASSDPLDLEQNESNFESESDEKFEEFRECDDLNEYRVSTDSSENSDSNDNDKFELLPFKCDLCKRSFQRKHAFLAHQKRHEKLMPSCEHCGKYFRETTAYKSHNQILCAQRIKRGQKLKSELPDIKCKYCEKIFKKSAFLKKHEERHEDSPFKCSSCPKQFMAKHLMRDHERTHTGEKPYKCAYCPVAFSNATNLKRHSLIHVGERTYLCTFGCGKAFYAERERAGHERSHTGEKPFVCELCGRYFAFQHQLSLHKKRFHMDKKNWPHKCKQCDKAFIMPNQLREHTFVHTGEKPFACNLCSGRFSKKSGLREHRKLHSGIKKHICTICNKAFAQNAGLYSHMKSHCVLKEGAEIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00644495;
- 90% Identity
- -
- 80% Identity
- -