Basic Information

Insect: Empis stercorea
Gene Symbol: Clamp
Assembly: GCA_949752835.1
Location: OX457089.1:13758188-13760801[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.6e-05 0.0027 18.9 3.7 1 23 129 151 129 151 0.99

2 8 9.3 9.4e+02 1.4 0.3 2 9 234 241 234 242 0.88

3 8 9.8e-06 0.00099 20.2 0.6 1 23 407 429 407 429 0.97

4 8 2.3e-06 0.00023 22.2 0.2 1 23 435 457 435 457 0.99

5 8 8.5e-06 0.00085 20.4 2.8 1 23 463 485 463 485 0.99

6 8 2.1e-06 0.00021 22.3 0.4 1 23 491 513 491 513 0.98

7 8 5.3e-06 0.00054 21.1 0.7 1 23 519 541 519 541 0.98

8 8 0.0001 0.01 17.0 0.2 1 23 547 569 547 569 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.6e-05	0.0027	18.9	3.7	1	23	129	151	129	151	0.99
2	8	9.3	9.4e+02	1.4	0.3	2	9	234	241	234	242	0.88
3	8	9.8e-06	0.00099	20.2	0.6	1	23	407	429	407	429	0.97
4	8	2.3e-06	0.00023	22.2	0.2	1	23	435	457	435	457	0.99
5	8	8.5e-06	0.00085	20.4	2.8	1	23	463	485	463	485	0.99
6	8	2.1e-06	0.00021	22.3	0.4	1	23	491	513	491	513	0.98
7	8	5.3e-06	0.00054	21.1	0.7	1	23	519	541	519	541	0.98
8	8	0.0001	0.01	17.0	0.2	1	23	547	569	547	569	0.96

Sequence Information

Coding Sequence: ATGGaagatttaacaaaaacaattatGTTTACTACAAATACAATACAAAATGGTCAACCAACAACAATACAATATCAAACAGCTGATGGTACAATATTAAAACAACCAAAAATTGAAGGACAAAAAACAAATCAACAAGAATATCCAACATTTTGTTATACAactggcAATGGTACAACAGTAAATTTAGTAACAACAGGTACTGGTGATGATAATAAAACATGTTATATTGCTCAACCTCTTGGTCCATATAATTATGCACTTGTTAATCAAATGCAATTAACACAAAATGGTCAAGTTGCTGGTATAGCAACTGTAGACAATCAAGGTAGATTACAAGTTGTTAATAAACCAATTACAACAaatacCATATCAAATATTAGTTTTAAATGTGATGTTTGCGGCCTAATGTTTTcccatttaacattattaaatcATCATAAACGTATACATAATCAAAATGGTAATACAGATAATAATCAAGATGGTCAAATAACAGTTGTTACCCAAAGTGGTGGACAAAATGTATTACAAGGTCAAACATTAGTATCAGAAACTGGACAAACATTAGGACAAATACAAATTGTTGCTACAGAATCATTAGAACCAGCATTAACAACACAAATGCAACaaggtggtggtggtggtacaCAAGAAATACAAGTAAATAACGGTAAAACATTAACATTAGAAAAAGGTAAATGTTCAATATGTGGTACATCTGTATTACATAGTGGTGGTAAACGTAAGAATGCTAAAATACGTtgtgaaaattgtttaaatagtGATAatgttacaaataataataataatcaattaaatgtAACACGATCAACACAAATATTTGTTGCACCAGATGGTGatgttaaatttgaaatgaGTGAATTACCAGAAAGTGATACATCAATGGATTCATTAACTGAACAACAAATAATTCAAGTACAAGGTGGACAACAAATTGTACATATTCAacaaccacaacaacaacatatgCAACAAGAAGacgaacaacaacaacatcagcagcagcaacaacaacaacatcatcatacaaataaaaatcaaattgcaCAAAGTAGTTCATCTGGTGGTGTACATCATCcagttaaaaaaagaaatttagcATCAGTTACGAAATGCCAAAAATGTAATGGATCAGGTGTGATTTTTGTTGGCGgcaatacaaataaattaatgaaaattgaacaaCCAAAACCATTTGTATGTAATATTTGTGGTGGTACATTTTCACGATATTCCAGTTTGTGGtcacataaaaaattacatagtggtgaaaaaaattataaatgtgaaATATGTGGTTTAGCATTTGCAAAAgctgtttatttaaaaaatcatcgTAGAATTCATACTGGCGAAAAACCATacaaATGTCTAACATGTGGTATGCAATTTTCACAATCACCACATTTAAAAAATCATGAACGTACACATAGTGGTGAAAAACCGTATGTATGTGAAGTATGCGATAAAGGATTTGCTCGACATGCAACTTTATGGAATCATCGTCGAATTCATACTGGTGAGAAACCATATAAATGTGAAACATGTGGTTCAGCATTTAGTCAAGCAGCACATTTAAAAAATCATGCTAAAGTACATTCGGGTGAAAAACCATTTAAATGTGATATTTGTTCAGCAGCATTTGCTGATCGTTTTGCATTAAAACGACATAGAGGAATACATGAAAAATATGgacAAACAGCACCACGACAACCACAAGTTAAAACTGATATTGATACTGATCCATTATTAATACATAAAGAAGAAATACCAGATATGGATGATGAACCACAAGCAACTGaagttataatataa
Protein Sequence: MEDLTKTIMFTTNTIQNGQPTTIQYQTADGTILKQPKIEGQKTNQQEYPTFCYTTGNGTTVNLVTTGTGDDNKTCYIAQPLGPYNYALVNQMQLTQNGQVAGIATVDNQGRLQVVNKPITTNTISNISFKCDVCGLMFSHLTLLNHHKRIHNQNGNTDNNQDGQITVVTQSGGQNVLQGQTLVSETGQTLGQIQIVATESLEPALTTQMQQGGGGGTQEIQVNNGKTLTLEKGKCSICGTSVLHSGGKRKNAKIRCENCLNSDNVTNNNNNQLNVTRSTQIFVAPDGDVKFEMSELPESDTSMDSLTEQQIIQVQGGQQIVHIQQPQQQHMQQEDEQQQHQQQQQQQHHHTNKNQIAQSSSSGGVHHPVKKRNLASVTKCQKCNGSGVIFVGGNTNKLMKIEQPKPFVCNICGGTFSRYSSLWSHKKLHSGEKNYKCEICGLAFAKAVYLKNHRRIHTGEKPYKCLTCGMQFSQSPHLKNHERTHSGEKPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCETCGSAFSQAAHLKNHAKVHSGEKPFKCDICSAAFADRFALKRHRGIHEKYGQTAPRQPQVKTDIDTDPLLIHKEEIPDMDDEPQATEVII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01297824;
90% Identity: -
80% Identity: -