Este021276.1
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- -
- Assembly
- GCA_949752835.1
- Location
- OX457088.1:13691597-13693786[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.64 65 5.1 1.2 2 23 56 78 55 78 0.91 2 15 3.7e-05 0.0037 18.4 1.4 2 23 217 239 216 239 0.96 3 15 0.00029 0.029 15.6 1.2 2 23 261 281 260 281 0.97 4 15 0.0075 0.75 11.2 1.5 1 23 288 311 288 311 0.95 5 15 0.00013 0.013 16.7 0.5 1 23 317 341 317 341 0.97 6 15 0.0062 0.63 11.4 5.7 1 23 347 369 347 370 0.95 7 15 0.00022 0.023 16.0 0.4 1 20 376 395 376 396 0.95 8 15 3.5e-05 0.0035 18.5 0.7 1 23 465 488 465 488 0.98 9 15 0.4 40 5.7 0.8 3 23 518 537 517 537 0.95 10 15 0.00027 0.028 15.7 1.3 1 23 544 567 544 567 0.97 11 15 0.00014 0.014 16.6 0.4 1 23 573 597 573 597 0.97 12 15 0.24 24 6.4 3.5 1 23 603 626 603 626 0.85 13 15 0.00032 0.033 15.4 2.4 1 20 632 651 632 654 0.95 14 15 0.00093 0.094 14.0 0.5 1 23 660 682 660 682 0.97 15 15 0.026 2.7 9.4 1.5 1 23 688 710 688 710 0.98
Sequence Information
- Coding Sequence
- atggatCCGTTTAAAGATGAAAATCtagaaaaattagattttaaaacAGAGTTTGATAATGAATCAGCAGAATCAAAAAAAGATAGTACTGGAAATTTTAGTTTTCCAAGTTTTAAATGTGGTGAAGTTTTTGTATCGAATTCAGCTAGTGGACAATTTGagttaaaatgtattttatgtagtaaacaatttcaaaaaattaaacaatttgctaaacatattttaaaagatCATTTAAATTCCGATTTAGAACATTCCATTGATGATTTAGTTAAAGATATTGAATTTGCAGCTACATCAATTATAGATACTGATTCAAATGGTGATGAAATTCAAGCATCTGAGGAACAACTAACATGTGAAGTAAATGTATCTACTTTTCTTGATATTAATGAATTTGAGGATGAGAAAGATGAAACTGATGATATTAATGAAAGTAGTGACGAGGAAGAAAATGTTGAAGTTAGTCAGAgtgaagaaaataatgaaaattccgAAGATGAAGAACGAAATTCTGAGAATTGGAACGAGAGTGAGagatcaaaacaaaaatataatggaTCTAGTAATGTTAGTGATGATTCAGTTACAAATGAAATTTTAGTGccaaaattaacagaaaaactgaaaaatgtaattaaaaagttACAATGTAAATATTGCAAAGCAAAATATGTAGTACAATCAAATTTAACTAAGCATATTAATCGTAAACATCGAATATTAGTAGAACGTGATCGTAAAAATAAATCAccaataaataaactaatagaaaaaattaaatgtaatatttgCGGGAAAGAAAcaactaaatataaattaatgcaACATTTACGATCGCATGATGATAGTCGTTATACACATAAATGTGAAACATGTGGTAAACTTTTTATATCTGAACGTAGCTTAGATTTACATAATcgtaatttacatttaaaagaACGTCCATATGCCTGTAAATTTGATAAATGTGATCGAGCATTTGTAACAGAACATGGTTTAATTGCACATCAAAAAATTCATACAAATGATAGACCATTTATGTGTCCAATTTGTCATAAGGGTTTCTTTCGAAAAACGAAATTAGATTATCATTTTGAGACACATCATATTAATAGACAAGTATTCACTTGTGATGAATGTGGCAAACAATTTATGAATACAAAAACATTAGAAAGACATAAAATTTGTAGTCATTTTGATGATAGATTAGAtggcaaaataataaaaaattgtactgATAATGATGTAAATAGtattccaaataaaataaatagtgaTTTTACTAATTCTTTGAATgatgaagaaaatgaaaatgatggaAATAATCACACGTATACATCAGCCACAACTACGAATATACAACAAACTATTACAAATAAACGTGGTAATTATGAATGTACATTTTgtccattaaaatttatttataaagcaAATTTAACTGAACATATTATGCGTAAACATAGTTCACAAATTgatcaaacaaaattattagCAGAAAAAGCTGAAATTGATAAACGTAATGCATCCAAACCACAATCAACAGCGATTTGTGATATTTGTGGTAAGGAGACATTAAAAACTCGTATGCGTCAACATTTAAGATCACATGATAATAGTCGTTATACACATAAATGTGATACTtgtggtaaattatttatatcagaGAAAAGTATGAATATACATATAcgtaatttacatttaaaagaTCGTCCCTATCCATGTAAATTtgataattgtaataaaaaatttgctacAGAAAATGCATTAAATGCCCATTATCAAATTCATACATGTGAAAGacaatttaaatgtaatatatgtgaAAAAGGTTTTTTTACACAAGCAAAacatgattatcatgttaaaaCATATCATATAAATGGTAGAATTTATAAATGTGATGAATGTGATAAAAGATTTTATGAAAATGGTAGTTTACAAGCACATAAAATATGTCATAGTAATGAAAAACCATATGCATGTGATGAATGTCCAGCTAGATTTCCAAGAGAAAGATCATTGCATATTCATAAACAATCTCATTCCGGTATTAAagcatatttttgtaaaatgtgtAATAAAGAATATGCATTATATAATGGAATATATACTCATATGAAAACTCATGGTATTTCTTATTCAGCTGCAATGGAAAAAGGTTTAGCTGGTCAGCGATCTagtttataa
- Protein Sequence
- MDPFKDENLEKLDFKTEFDNESAESKKDSTGNFSFPSFKCGEVFVSNSASGQFELKCILCSKQFQKIKQFAKHILKDHLNSDLEHSIDDLVKDIEFAATSIIDTDSNGDEIQASEEQLTCEVNVSTFLDINEFEDEKDETDDINESSDEEENVEVSQSEENNENSEDEERNSENWNESERSKQKYNGSSNVSDDSVTNEILVPKLTEKLKNVIKKLQCKYCKAKYVVQSNLTKHINRKHRILVERDRKNKSPINKLIEKIKCNICGKETTKYKLMQHLRSHDDSRYTHKCETCGKLFISERSLDLHNRNLHLKERPYACKFDKCDRAFVTEHGLIAHQKIHTNDRPFMCPICHKGFFRKTKLDYHFETHHINRQVFTCDECGKQFMNTKTLERHKICSHFDDRLDGKIIKNCTDNDVNSIPNKINSDFTNSLNDEENENDGNNHTYTSATTTNIQQTITNKRGNYECTFCPLKFIYKANLTEHIMRKHSSQIDQTKLLAEKAEIDKRNASKPQSTAICDICGKETLKTRMRQHLRSHDNSRYTHKCDTCGKLFISEKSMNIHIRNLHLKDRPYPCKFDNCNKKFATENALNAHYQIHTCERQFKCNICEKGFFTQAKHDYHVKTYHINGRIYKCDECDKRFYENGSLQAHKICHSNEKPYACDECPARFPRERSLHIHKQSHSGIKAYFCKMCNKEYALYNGIYTHMKTHGISYSAAMEKGLAGQRSSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -