Basic Information

Insect: Empis stercorea
Gene Symbol: -
Assembly: GCA_949752835.1
Location: OX457085.1:81309271-81312527[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.3 2.3e+02 3.3 2.1 2 23 211 233 210 233 0.89

2 15 3.7e-05 0.0037 18.4 3.3 1 23 523 545 523 545 0.99

3 15 0.0069 0.7 11.3 3.8 1 23 551 573 551 573 0.97

4 15 4.5e-05 0.0045 18.1 0.7 1 23 579 601 579 601 0.95

5 15 0.017 1.7 10.1 2.6 1 23 608 630 608 630 0.98

6 15 0.0003 0.03 15.6 1.1 1 23 649 671 649 671 0.99

7 15 4.8 4.9e+02 2.3 0.4 1 13 677 689 677 691 0.91

8 15 0.004 0.41 12.0 1.2 1 23 706 728 706 728 0.95

9 15 2.7e-05 0.0027 18.9 1.4 1 23 734 756 734 756 0.99

10 15 0.00021 0.021 16.0 0.6 1 23 783 805 783 805 0.99

11 15 0.00076 0.077 14.3 2.4 1 23 811 833 811 833 0.98

12 15 2.2e-05 0.0022 19.1 1.0 1 23 839 861 839 861 0.99

13 15 0.00075 0.075 14.3 6.1 1 23 867 889 867 889 0.98

14 15 0.00027 0.027 15.7 0.5 2 23 910 931 909 931 0.97

15 15 0.0021 0.21 12.9 0.9 1 23 937 959 937 959 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.3	2.3e+02	3.3	2.1	2	23	211	233	210	233	0.89
2	15	3.7e-05	0.0037	18.4	3.3	1	23	523	545	523	545	0.99
3	15	0.0069	0.7	11.3	3.8	1	23	551	573	551	573	0.97
4	15	4.5e-05	0.0045	18.1	0.7	1	23	579	601	579	601	0.95
5	15	0.017	1.7	10.1	2.6	1	23	608	630	608	630	0.98
6	15	0.0003	0.03	15.6	1.1	1	23	649	671	649	671	0.99
7	15	4.8	4.9e+02	2.3	0.4	1	13	677	689	677	691	0.91
8	15	0.004	0.41	12.0	1.2	1	23	706	728	706	728	0.95
9	15	2.7e-05	0.0027	18.9	1.4	1	23	734	756	734	756	0.99
10	15	0.00021	0.021	16.0	0.6	1	23	783	805	783	805	0.99
11	15	0.00076	0.077	14.3	2.4	1	23	811	833	811	833	0.98
12	15	2.2e-05	0.0022	19.1	1.0	1	23	839	861	839	861	0.99
13	15	0.00075	0.075	14.3	6.1	1	23	867	889	867	889	0.98
14	15	0.00027	0.027	15.7	0.5	2	23	910	931	909	931	0.97
15	15	0.0021	0.21	12.9	0.9	1	23	937	959	937	959	0.98

Sequence Information

Coding Sequence: ATGTCTTCAGTAAATAAATCTAAACGTGCACGATATTGTGTAGCACCAGGATGTACAAATTATGAATGTGCCCTTAAAAAAGTTGAAGATGACAATGCAACAAGAAATCAACAAAATTCTGCAGTAACATATCATAATTTTCCGACAAAGTTAAGTTTACGAAATAAATGGTTTAAATTTGTTGGTTATCATAAAAAAGGTGTTAGCAGTTTAACCTGGCGTACATGGACAATATGTTCAGAACATTTTGAAGATTCTgaatttgaagaaaattgtCATTTACAATGTATTGATGGTGTATATAAacgtttaaatataaaacttaaaaatggTGcggTGCCaacaaaatctaaattattacCACCAACAACGCCGCAATCATCAGAAAATGATGTTAATAAAAGTCATAttgatataaatacaaattctaTTGATTTTACAACGCCAACACCATCAAATACtacagaaataataaataataataatgatgatataaatagtaatataaatcttaaaaatgaatataatgaaattgattttgataatgaaacaatttatacagaaaTTGATGAagattttcattcaaaatgtGGTGAAGTATTTGTAACACGTAaaggaatatttttatatttttgtatattttgtaatgaaaatttagaaaattcacatcaatttataaaacatatttataaagaaCATTTATCATTAGATAATGATATTgaagaagaaataaataataaaaatattaacgataataataatattaatattaaaaatgaagaaataattaaattatcaccaagtaaaaaaaatactattaaagTACCATTACCATTACAACATTGTGAAATTGTTGAAAATGAATCTGGTAATTTTGAAACAATTAGTTTTTTTGATTATGATGATGaggataaaaataattctgatcaaaatattgataatgaaattaatcaaaatttatatgctgaaatacaagcaaaaaaaatggattcagaattatttaaaaagccAAAagttgaattacaaaaaaataatatgaattcaTCATTATTAccaacaaataataatgatgatattaatgattttattgatttaactgatgataatattgaaaataatatggattttattgattataatattgaaaataatatggaaaataatattgataatgatattgaaattattaatgatgatgataaaatttcaattaaaaatgaagCTATTATTGATAATCGTAATGTtgatatatcaaatttaaaaattaataacgacaaaacaatttttacagaattaaataatgatatcattaataatgataattataataattctactataaataatataatatcgaAAAATTGTCTAATAAAAAATACCAATCCAAATCATTTAGATTTAgatgataataatgaaataccaaattgtagtagtaataataatgaaatattaccAGCTGCATATAATGATAAAGAATTTGTTGAagcagatgatgatgatgatgatgatattggtAATGAActtgatgaagatgatgatgattggTATCCAGTTAGTCGTAaacaatttaaatgtaaatattgtccaaaaatattaaaatcccAATGTAGTTTAACAATTCATATACGAAGTCATACTGGTGAAAGACCATTTAAATGTCATACATGTTCGCGTACTTTTAAATCACAaggaattttatataatcatgAGAAAATACATACTGgtgttaaaatgtttttatgCAATATATGTGGTTTATatttttcaacacaatatactttaaatattcATGCAAAACGTCATGAAACTCaacaaaatcaatataaatGTGCATATTGTGATAAAATGTTTctacgattaaaaaaaaaagtacttcaTCAACGGACACATAATGTTGATATTAAACATGAACCAGATGAAGAAACaaacatattaacaaaaaattttaaatgtgaatTTTGTTTGAAAGTATTAAAATCACAATATTCATTAATTGAACATCGACGTATACATACTGGTGAAAAACCATATCCATGTAAATTTTGTCCATCTGCATTTCGttcaaaattagtaaaaatatgCCATGAACGTAGTAATCATACTGGTGAAAGACCATTTAGTTGTATATATTGTGATAaagcATTTGTAACAAAAAGTACACGCGATAATCATGAACGAACACATACTAAAGAGAGACCATTTAAATGTGATTTATGCGATAAGACATATCGTCAAGCAAGTGCTAAATATATTCATATGAAAACACATTTTCAACCTAAAATCGAAAAAAGAAGGAAAAGATCAAATTCAGCTAATGGTTCATGTGTtggtgataataataaaatatatcaatgTGAATATTGTCAAAAGATATTATCATCACAAAATGTATTAAATGAACATCGTCGTATACATACTGGTGAAAAACCATTTTCATGTAATCACTGTCCAATGAAATTTCGTgcaaaatcattattattttatcatgtACAAATTCATACTGGTGAAAAACGCTTTGAAtgtaaatattgttataaaagatTTCGACTTGCTGGCAACATGGTCGCACATCTTCGTACCCATACTGGTGAAAAACCATTCCGTTGTACTTATTGTGATAAGAGTTTTTGTCAAAAACAAAGTAAAATGATACATGAAAAAACCCATATACCAGGTTATAAAAAAGTATCAGAAGATAAAGAGAAAGAAAATAAAGAACGTGTATGGAAATGTGATATGTgtggaaaaattttattaaataaatatacattaacAAATCATATACGTACACATACTGGTGAACGTCCATATAAATGTTCATATTGTCCATCAGCATTTAAATCATTATCAGAACAATACCAACATGAAAGAATTCATTCTGGTGTTAAACCATATAAATGCATTGAATGTGAAAAAggtattgtaaaaaattttgtttga
Protein Sequence: MSSVNKSKRARYCVAPGCTNYECALKKVEDDNATRNQQNSAVTYHNFPTKLSLRNKWFKFVGYHKKGVSSLTWRTWTICSEHFEDSEFEENCHLQCIDGVYKRLNIKLKNGAVPTKSKLLPPTTPQSSENDVNKSHIDINTNSIDFTTPTPSNTTEIINNNNDDINSNINLKNEYNEIDFDNETIYTEIDEDFHSKCGEVFVTRKGIFLYFCIFCNENLENSHQFIKHIYKEHLSLDNDIEEEINNKNINDNNNINIKNEEIIKLSPSKKNTIKVPLPLQHCEIVENESGNFETISFFDYDDEDKNNSDQNIDNEINQNLYAEIQAKKMDSELFKKPKVELQKNNMNSSLLPTNNNDDINDFIDLTDDNIENNMDFIDYNIENNMENNIDNDIEIINDDDKISIKNEAIIDNRNVDISNLKINNDKTIFTELNNDIINNDNYNNSTINNIISKNCLIKNTNPNHLDLDDNNEIPNCSSNNNEILPAAYNDKEFVEADDDDDDDIGNELDEDDDDWYPVSRKQFKCKYCPKILKSQCSLTIHIRSHTGERPFKCHTCSRTFKSQGILYNHEKIHTGVKMFLCNICGLYFSTQYTLNIHAKRHETQQNQYKCAYCDKMFLRLKKKVLHQRTHNVDIKHEPDEETNILTKNFKCEFCLKVLKSQYSLIEHRRIHTGEKPYPCKFCPSAFRSKLVKICHERSNHTGERPFSCIYCDKAFVTKSTRDNHERTHTKERPFKCDLCDKTYRQASAKYIHMKTHFQPKIEKRRKRSNSANGSCVGDNNKIYQCEYCQKILSSQNVLNEHRRIHTGEKPFSCNHCPMKFRAKSLLFYHVQIHTGEKRFECKYCYKRFRLAGNMVAHLRTHTGEKPFRCTYCDKSFCQKQSKMIHEKTHIPGYKKVSEDKEKENKERVWKCDMCGKILLNKYTLTNHIRTHTGERPYKCSYCPSAFKSLSEQYQHERIHSGVKPYKCIECEKGIVKNFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00644158;
90% Identity: iTF_00644158;
80% Identity: iTF_00644158;