Este025362.1
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- -
- Assembly
- GCA_949752835.1
- Location
- OX457089.1:13147495-13151305[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.022 2.2 9.7 0.3 2 21 37 56 37 57 0.93 2 15 0.0044 0.44 11.9 0.6 1 23 132 155 132 155 0.94 3 15 0.00026 0.026 15.8 1.0 3 22 165 184 164 184 0.94 4 15 3.1e-05 0.0031 18.7 1.0 1 23 192 214 192 214 0.96 5 15 0.65 65 5.1 1.8 1 23 220 242 220 242 0.96 6 15 4e-05 0.004 18.3 1.5 1 23 248 270 248 270 0.98 7 15 1.3 1.3e+02 4.1 1.8 8 23 591 607 582 607 0.83 8 15 9.9e-07 0.0001 23.4 1.2 1 23 628 650 628 650 0.98 9 15 0.0029 0.29 12.5 0.4 2 23 659 681 658 681 0.94 10 15 0.00024 0.024 15.9 0.1 2 23 686 708 685 708 0.95 11 15 0.0016 0.16 13.2 0.1 1 20 724 743 724 745 0.93 12 15 7.3e-07 7.3e-05 23.8 0.2 1 23 753 775 753 775 0.99 13 15 7.2e-05 0.0073 17.5 1.0 1 23 781 803 781 803 0.96 14 15 1.7e-06 0.00017 22.6 1.7 1 23 809 831 809 831 0.99 15 15 0.039 3.9 8.9 3.0 1 23 837 859 837 859 0.98
Sequence Information
- Coding Sequence
- atgtctactagaaaaagaaaatatgaagaaaTTGATTGGTCTGATTCTGGTGGATCGGAACCCGAAGAAGTAATTACTGAGGAGAATAGTATTAAAATTTCCGATAGAAGATGTCCTTATTGCAttcaAGTATTTAAAACATCTTTGGATTTaacaaaacatgaaaaaaacTGTAAAATAGCGAAAACTTGTAATGCAAAACGAGTTACTTGTAAAGATGGTAGTAAAAAGTTTATATGCCATATTTGTTGTAGaacatacaaatatttaaatataatccaAAACCATGAAAAGAAACATGAGCCACCAGGTGGTTTcttttgtaaatattgtaattttcagTGTTGTCTTGATGTAAAATTGGAAAAACATAAAGAGGAGGCACATAaaGAATTCCTTTGCCGATTGTGTAATATAACATTTGAAACAAGAGAAACATACATTgaacatattaaaataaagcATGATGGTCGtgataaagaatataaaatatgtgaAGATTGTGGACGTCAATTTAGATATTCTgaacatttaaattatcataaaaagaCAAATTGCCAAACAATATTTCCATTTAAATGTAATGAATGTGGAAAGAGTTTTCGATCAAAAGgAATTTTAAAAACCCATAGCCTCATTCATAGCGGTGAGAAAAAGTTCTTTTGTTCATTTTGTCCCATGAGTTTTATATGTAAGGCTCAAGTAGTTGTTCATGAAAGAAAGCATACGGGTGAAAAACCATATAAATGTGatatttgttCAAAAGCATTTGCACATCGTGAAAGTTTAGTAACCCATTCATCTACACACACTGGAATGAAACCATATTTATGTGAATGTTGTAATGCCAGATTTTCATGTGTTTCTAGTATTTTAGCTCATCGAAGAACACGACCAAATAATTGTGGTTTACCAGAATATTGTACAAAATTAGCAAAAGCTTGTCCACGACCAAGTGTTCGCGCAAAACCAAacattgaattattaaatattaagcCTGTTAGAGTGATAAGAACTagtgaaaaagaaaaacttttggaGAAACGGAAAATTGAGAAAAAGTCAGGAGAAAATTctaaaaccataaaatttaaaagaaaaacagaTATTGTGGATCCAGAAGCTAtaaTAGAATCAAATAAAGTGTCAATTTTTACAAACAAAAGacctaaaaaaagtaaaaataaaggAAATCAATATTCTgaagaaaataaagaagaaattgaaaatactTATCAACCAGATCCATTACTAAATGAAAGTAATTTAGTGAACCATATACCAGAAATTGAAGGAAATAATTCTGAAATTAAATCCCAACTTTTAccagaacaaaataaaatttcaatttcagcAAGAGAAAGAACTAAAAGAagcaatatgaaaattataaattatgctGATTACAATAAAAAAGGAATTAATATTACACATAAATATAGTTCAACTACAAAACAAACACCAAAATCGAAGAATCatggttttaatattaaaaatcagcATTTGGTAGAAGCAACTAAAGCTTCAATTTTTACTACCAAAAGGCCGAATAAAACTTGTAACAGTATTTCAGACAAAAACTTAGAATCGGATCAGGATAGTGAAAGATTTATAGATAGTTCAACTAAGAAATTTACTACATCTGATTCGGAAGATGAACCACTTATTAGAAGTACGAAcaaaattgttaacaaaaatattaataataaatgtaagaaattaaagcaaaaaagaGAAGAAATATTTGAATGTATGGAATGTATTCATAAGCAACCATTTCGTCGCAAAATTAGCTATGAAAAACATTTACGTAATCGCcataaaaaaactgataatgaaatatttgaaatattgagTCTAAAAAATCATAAACCATCAAGTTATTCCTGTAAAATATGTGGAAAATCATTTACCTATTCAAAACCACTTAATCAACATATAAAATTACATGGTATTGAcggtaaattaattataaagtgtaaaacttgtttaaaatattttgctaCAAAAGAGGATTTATTAGCCCATGctgaaaaaaatcataaaaatcaaattacttgtttaatatgtaataaaatgtaCCCAGATAGAGGTGCGTTACAGGCTCACAAACGTTATGCACACACAGAAcgtgtaaaaaataatatctcAACCAAAAAGAAAGATActtatatttgtaataaatgtGGTAAAATTTTATCTAGTAATAATTCATTAATAAGTCATGAATTATCAAAATGTAGTactgaatatttatataaatgtgatGAATGTGGTAAATCTTTATCTTCGCCATCAGTATTAAAAACTCATATGATGATTCATACTGGAGAATTACCATTTTTATGTCCACATTGTTCTAAAGGTTTCCGTACAAAAGCACCAATGATTGTACATCAACGTATGCATACTGGGGAAAAACCTTTTCAATGCACAtaTTGTGATAAAACATTTGCATATCGTGAAagtttatttattcatttatcaACGCATACGGGTATAAAACGATTTATGTGCACATCATGTAGTGAACGTTTTTCATGTATTTCTGGATTAACAAAACATTGGAGAACTCATTCTGATACATGTGGTGCAGATCCAAATCGAACAACCAAATCTGTTGGTGAATTTGTTGGATATCGTAAAGGACAATTAgagaataagaaaaaaacgatataa
- Protein Sequence
- MSTRKRKYEEIDWSDSGGSEPEEVITEENSIKISDRRCPYCIQVFKTSLDLTKHEKNCKIAKTCNAKRVTCKDGSKKFICHICCRTYKYLNIIQNHEKKHEPPGGFFCKYCNFQCCLDVKLEKHKEEAHKEFLCRLCNITFETRETYIEHIKIKHDGRDKEYKICEDCGRQFRYSEHLNYHKKTNCQTIFPFKCNECGKSFRSKGILKTHSLIHSGEKKFFCSFCPMSFICKAQVVVHERKHTGEKPYKCDICSKAFAHRESLVTHSSTHTGMKPYLCECCNARFSCVSSILAHRRTRPNNCGLPEYCTKLAKACPRPSVRAKPNIELLNIKPVRVIRTSEKEKLLEKRKIEKKSGENSKTIKFKRKTDIVDPEAIIESNKVSIFTNKRPKKSKNKGNQYSEENKEEIENTYQPDPLLNESNLVNHIPEIEGNNSEIKSQLLPEQNKISISARERTKRSNMKIINYADYNKKGINITHKYSSTTKQTPKSKNHGFNIKNQHLVEATKASIFTTKRPNKTCNSISDKNLESDQDSERFIDSSTKKFTTSDSEDEPLIRSTNKIVNKNINNKCKKLKQKREEIFECMECIHKQPFRRKISYEKHLRNRHKKTDNEIFEILSLKNHKPSSYSCKICGKSFTYSKPLNQHIKLHGIDGKLIIKCKTCLKYFATKEDLLAHAEKNHKNQITCLICNKMYPDRGALQAHKRYAHTERVKNNISTKKKDTYICNKCGKILSSNNSLISHELSKCSTEYLYKCDECGKSLSSPSVLKTHMMIHTGELPFLCPHCSKGFRTKAPMIVHQRMHTGEKPFQCTYCDKTFAYRESLFIHLSTHTGIKRFMCTSCSERFSCISGLTKHWRTHSDTCGADPNRTTKSVGEFVGYRKGQLENKKKTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -