Este025364.1
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- -
- Assembly
- GCA_949752835.1
- Location
- OX457089.1:13156820-13160176[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.7 4.7e+02 2.3 0.1 2 12 31 41 31 50 0.74 2 17 9.6 9.7e+02 1.4 2.7 1 23 72 94 72 94 0.91 3 17 0.0012 0.12 13.7 0.9 1 23 100 123 100 123 0.92 4 17 9.4e-06 0.00095 20.3 0.3 1 23 126 149 126 149 0.98 5 17 0.22 22 6.5 0.4 2 13 158 169 157 170 0.90 6 17 1.7e-06 0.00017 22.6 1.1 1 23 186 208 186 208 0.98 7 17 7.8e-05 0.0079 17.4 3.6 1 23 214 236 214 236 0.98 8 17 3e-05 0.003 18.7 3.8 1 23 242 264 242 264 0.98 9 17 7.1 7.1e+02 1.8 4.0 1 22 270 291 270 291 0.93 10 17 9.5 9.6e+02 1.4 4.1 1 23 544 568 544 568 0.95 11 17 7.1e-05 0.0072 17.5 2.2 1 23 589 611 589 611 0.98 12 17 0.00011 0.011 17.0 3.0 1 23 619 642 619 642 0.97 13 17 0.00073 0.074 14.3 0.3 2 23 647 669 646 669 0.96 14 17 0.00026 0.027 15.7 0.1 1 21 699 719 699 720 0.94 15 17 0.00016 0.016 16.4 0.1 1 23 728 750 728 750 0.98 16 17 0.044 4.4 8.7 7.3 1 23 756 778 756 778 0.97 17 17 2.4e-05 0.0025 19.0 0.2 1 23 784 806 784 806 0.98
Sequence Information
- Coding Sequence
- ATGGCTTTAACTACAACAGAAACTAAGGAAAAGATTACATGGTCTGATACCGATGATTCTTGGGATGAATTTGAAAAAGCCAAGGACCGTAAATGCACTTATTgcacGAAAACTTTACAATTTGCCCAAGATATATTAGTGCATgaacaaaattgtaatatagCTAAAACATGTTCAGCTAGTAAAGTTACATGTAAAGATggtacacaaaaatttatatgtgaTATTTGTTGCTCAACATATAAATATCTATTTAAATTGGCTGAACATGAAAAACGTCATGACCCACCAGGTggatttatatgtaaatattgtgATACACCATATTGTACAGAGGTTCAATTAGAACAGCATACAGAAGAGGAACATAAAGTATTTAAATGTCAAATATGTAAGGAAACTTTTGAAACGGCTGATTCATATATTTCCCATATACGAATTCTTCATAACGGTCATGATAAAGAATATAAGTCATGTGAAGAATGTGGACGACATTTTAAAtcacaattaatattaaaatttcataaggAGACAAATTGTGGTACAAATAAACGTTATAAATGTGATGAATGTGGTAAAACATTTCAAACAAATGGAACATTAAAAACACATAAATTAATTCATAGTGGTGAAAAGAGATTTTGTTGTAGTTTTTGTGGTATGAAATTTACAGTTAAAGGATTATTAACTAGACATGAAAGAACACATACTGGTGAAAAACCTTATACTTGTAAtTTGTGCCAAAAATCATTTTCCCATCGAGACAGTTTAATTACACATTCAACTACACATACGGGTATAAAACCATATATATGTGAATGTTGTGGATCAAGATTTTCATGTACTTCAAATCTAATTCAACATCGTAGAAAACGACCAGAAACATGCGGTCGaccagaaaattgtaaaaaactaACTAAAGCTTGTCCAAGACCTGGAGTTAATAatCCTCAATATCTAACATCACATGAACCAGTTCGATTATTTAAATCTCATCGTGTAATTAAATCAACTGAAAAGGAAAAACTTAAAGAGAAAATTAAAGCTGCTCGTGAAGAAAAGAAATTAGAATCAACAAAACCAAAACGAcggagaagaaaaaaaattaatattgAGCAAAATACTGAAGATGAAAGTACtgatattattacaaaaatggTTAATATAGCTGATacaattaaaatggaaattgaaCCAGAATTTAAACGATGGAATTTTACAGGAAGTGAATTAGAATCCAATAATGATGATATTAAGTCTGAAATTTGTATTGAACCAGAAATTACCTTAAAAGATTCACCAACAAGTTCGAATAttcccagtaataattttaatataaaaaatgaagataATGATATCGATTGTAATGATTATCTAAATGATAATATATCTAATGATAGTTCTTCAGGAAAAGAATTTGAAGATAGTTTTAAATCGAAATCTCAAATAAAAAAGACTGATTCAATAACAATAgtAACTGAAAAATCTGCTCGTATTAAACGTCCTAGGaaacaatgtaaaaaaaattataaagaaaatgaatttagTGATGATAATATTCAAGAAGATGATAAAAATCAAAGTGATGAttgtaaaaatgaattaaaatcatCAATTAAAAAACAATCCTATGAATGTTATGAATGTACAGATAAATTATATACTAGAAAAAATAGTTATCATATGCATTTATTAAAGTtccataataaaaatgaaaatgaaattaaacatattttcgATGTACTCAATGAAAGTTTATCTGAATATTCTTGTAATATTTGtggtaaattttattcaatGCACAAAGCCTTAAGAAGTCATATTGACCGTCATGGACCAGATGGATCACTTGTACATAAATGTAAAAcatgtacaaaatattttgcatctaaagatgatttaaaaatacattatcAAATTGATCATAAAGATAAAATAACTTGtacaatttgtaataaaacttaTAAAGATTCAGAAATTTTAGCTGCACATAAACGTAAAGCACATttaaatcatttgaaaattgaaCCAAAACATAATGTATTagatattgataaaaaatgtataaaaaaatcacaacaaataaaacaaacatttatttgtaatatttgtggtaaaatattgaaaagtcGAAGTTCACTTAGTATACATGAACGTTCTGATTGTGGTAAAAAtccaatatttaaatgtaatgtTTGTGGTAAAGCATTAACAACAGCTGGTATTTTAAAATCACATATGTTAATACATTCTGGTGAATTACCACATCAGTGTTCATTTTGTGAAAAACGTTTTCGCCAGCGCCAGCAATTGACTTGTCATGAGCGAATACATACTGGAGAAAAACCATATCCATGCACGtatTGTGATAAAGCATTTgcttttgttgaaaatttatatattcatttatcAACTCATACTGGTATAAAACGTTTTATGTGTATTACTTGTGGTGATCGATTTTCATGTATTTCGGGTTTAAAAAATCATTGGCGTACTAATGCAACAACATGCGGATCAGATCCAAATAGGTCGACAAAAGCAGTTGGTGAATATATGGGATTCCAAAAAGGTCAATTAGTTCATAAGAAAAatacagaataa
- Protein Sequence
- MALTTTETKEKITWSDTDDSWDEFEKAKDRKCTYCTKTLQFAQDILVHEQNCNIAKTCSASKVTCKDGTQKFICDICCSTYKYLFKLAEHEKRHDPPGGFICKYCDTPYCTEVQLEQHTEEEHKVFKCQICKETFETADSYISHIRILHNGHDKEYKSCEECGRHFKSQLILKFHKETNCGTNKRYKCDECGKTFQTNGTLKTHKLIHSGEKRFCCSFCGMKFTVKGLLTRHERTHTGEKPYTCNLCQKSFSHRDSLITHSTTHTGIKPYICECCGSRFSCTSNLIQHRRKRPETCGRPENCKKLTKACPRPGVNNPQYLTSHEPVRLFKSHRVIKSTEKEKLKEKIKAAREEKKLESTKPKRRRRKKINIEQNTEDESTDIITKMVNIADTIKMEIEPEFKRWNFTGSELESNNDDIKSEICIEPEITLKDSPTSSNIPSNNFNIKNEDNDIDCNDYLNDNISNDSSSGKEFEDSFKSKSQIKKTDSITIVTEKSARIKRPRKQCKKNYKENEFSDDNIQEDDKNQSDDCKNELKSSIKKQSYECYECTDKLYTRKNSYHMHLLKFHNKNENEIKHIFDVLNESLSEYSCNICGKFYSMHKALRSHIDRHGPDGSLVHKCKTCTKYFASKDDLKIHYQIDHKDKITCTICNKTYKDSEILAAHKRKAHLNHLKIEPKHNVLDIDKKCIKKSQQIKQTFICNICGKILKSRSSLSIHERSDCGKNPIFKCNVCGKALTTAGILKSHMLIHSGELPHQCSFCEKRFRQRQQLTCHERIHTGEKPYPCTYCDKAFAFVENLYIHLSTHTGIKRFMCITCGDRFSCISGLKNHWRTNATTCGSDPNRSTKAVGEYMGFQKGQLVHKKNTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -