Este025365.1
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- -
- Assembly
- GCA_949752835.1
- Location
- OX457089.1:13161239-13165271[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.61 62 5.1 0.2 2 21 33 52 33 53 0.91 2 20 0.45 45 5.6 5.0 1 23 74 96 74 96 0.97 3 20 0.009 0.91 10.9 3.5 1 23 102 125 102 125 0.90 4 20 6.3e-05 0.0063 17.7 0.2 1 23 128 151 128 151 0.97 5 20 0.9 91 4.6 0.3 2 20 160 178 159 180 0.84 6 20 3.8e-05 0.0039 18.4 2.6 1 23 188 210 188 210 0.98 7 20 0.0047 0.47 11.8 7.5 1 23 216 238 216 238 0.95 8 20 3.1e-05 0.0032 18.6 3.6 1 23 244 266 244 266 0.98 9 20 6.3 6.4e+02 1.9 1.8 2 23 401 424 400 425 0.84 10 20 0.025 2.5 9.5 2.6 2 22 490 511 489 514 0.90 11 20 0.00022 0.022 16.0 0.3 2 23 536 557 535 557 0.95 12 20 2.8 2.8e+02 3.0 4.4 2 23 587 610 586 611 0.91 13 20 3e-06 0.0003 21.9 0.8 2 23 633 654 632 654 0.97 14 20 0.6 61 5.2 0.8 1 23 660 683 660 683 0.92 15 20 0.00022 0.022 16.0 0.6 2 23 688 710 687 710 0.89 16 20 0.18 18 6.8 0.1 1 20 718 737 718 739 0.88 17 20 0.00035 0.035 15.3 0.1 1 23 747 769 747 769 0.98 18 20 1.9e-07 1.9e-05 25.6 2.1 1 23 775 797 775 797 0.99 19 20 2.7e-06 0.00028 22.0 1.5 1 23 803 825 803 825 0.98 20 20 0.26 27 6.3 2.1 1 23 831 853 831 853 0.98
Sequence Information
- Coding Sequence
- ATGGCAGATCATGCAGCAAATATTAACTGGTCTGATGATTCTACAGAAGAATCAGATGATATAGAACAAGATTCTAATAATAAGTTAGATAATAGACGTTGTACTTATTGTTttaaaatattaaaaagttccTCAGATATTccaaaacatattaaaatttgtgaaattgcaattaaaaGTTCGGCTCGTTTAGTAACATGTAAAAATGGATCAAAGAAATTTATTTGTGATATTTGCTGTCGTACATTTAAGCATTTACGTTTTTTAGCTGAACATGAAAAACGTCATGATCCACCAGGTGGTTTCTTATGTAAATattgtgataaaaaattttgtactgAAGCAGAAAGGGAAAAACATACAGAAGAAAAGcataagGTCTTTAAATGCCAAATttgtaaagaaatttttgaaactGCTGACAATTATGTtgatcatattaaaatattacataatggACAAAATCGCGAGTATAAATCATGTAATAATTGTGATCGATTATTTAGTTCACCATTGATACTTAAATATCACCAGGATACAAATTGTGgtcaaaattgtaaatttaaatgtgATCAATGTGATAAAACATTTCAAACAAAAGGCagattaaaaatacataaattaactCATAGTGGCgaaaagaatttttgttgtaGTTATTGTGGTCAAACATTTCgtcattttatgaatttacaaTCACATGAATTTAAACATACTGGAAAAAAACCATACCAATgcaatGTTTGTCAGAAATCATTTTCACATCGTGCTAGTTTATCAACACATTCAACAACTCATACAGGTTTAAAACCATATTTATGTGAATGCTGTGGTTCACGGTTTTCATGTGCATCAAATATTATTCAGCATCGTAAAAAACGACCTGATACATGTGGTTTACCAAAATACTGTATGAAATTAGCTAAAGCTTGTCCAATTGCTAATttgaaaaATCTAGAAGTTGAACAGAAACTGAAAGaagaacaaataaaattaaatacaaatgaAAAGGAAAATGAAGGAAATCTGTTAACTTGTTTCAGTAAAGAGTATTATGATAAGGAAAAACAATTAGATTCAAAGAGCTTTGAAACTGAAATATCGAACCCCATTCCCAATgACTCTCCAAAACAatgcttaaaaaaatttaataacatgaAAATTCATTCTGAAAACCTAACAACtggaaagaaaataataaaatgttataaatgtGTTGatgagattttttattttaaaagtgttTATATTAGACATTTACGAAGTCGCCATCATAATAAATCATcagatgaaattgaaaaaatattatctgAATTAAAAGAAGATCAATTAAATGAACCGAAAATTCAACAACGTAATGATAtagaaaatgAAATTTCCTCAGATAATAAAATTCAGTCTAAAttagaaattgaaaatgatgacattttggaagaaaattctaatatatctgCAAATAAATCAATTCGTTGTTACGAGTGCAACAATCAATCTTTTTCTCAAAAAAGTGAATATATAAGGCATTTACGTGGACGATGTCATAATAAATCAgaagaagaaattgaaaaattaattgagaATTTGTATAGTAcaaaaccaaatttaaaatgtaatatttgtGGTAAATTATACACAATTCAATATTATCTTCAAAAACATCTTGAAGCTCATgATAATccgaaagaagaaaaaatttccaataagtCTGATGATTTACAACCAAATGTAGAAAGTAGTAAAGATGGAAAGAAATTAATTCGATGTTATAAATGTACAGATCAAGTATTTAATCAGAAATGTTTATACATTAGACATTTACGGGGTAGGCATCACAATAAATCTGAagaagaaatagaaaaattattacaaataataaatagaaatggatctaatttgaaatgtaaaatatgtggaaaaatttattcaattccatattatttaaaaaaacatttaaaaaccCATGgAATTGAGGCCACTCACAAATGTAAATTATgtgatgaatattttttaacaccAATTGAAGTTTTAACACACACCCAATCAGAACATAAAGATCAATTAACATGTTCAATTTGtagtaaaaaattttcagaTTTAGATTCACTTGTACGTCATAATCAGTTTGTCCATTCGAATAAAgagaaaaaacaatttatttgtattaaatgTGGTAAAAAGACGTCAAGTAAAATAGCATTAAATGATCATGAATTATCAAATTGTGGTCAAAATCCAATTTATCGATGTCATGTATGTGGTAAAGGATTAAGTACAGCTGGTATATTAAAAGCTCATATGATATTGCATACAAATGAATTTCCATATAAATGTTCATATTGTGATAAAGGATTTCGTTCCAATGACAAACTAAAAGTTCATTTAAGATCACATACAGGAGAAAAACCATTTAAGTGCccaTACTGTGATAAAGCGTTCGGACATTCATCCACTTTATATATCCATGTATCAACTCATACGGGTATAAAACGATATATGTGTACAACATGTAGTGATAGATTTTCTTGTATTTCTGGGTTAAAAGCACATTGGAGAACACATCCAACAACTTGTGGAGTTGATCCGAATCGAACAACAAAACCACAACTATTTATGGGATATCGTAAAGGgaaattagttaataaaaaagatattataGAATGA
- Protein Sequence
- MADHAANINWSDDSTEESDDIEQDSNNKLDNRRCTYCFKILKSSSDIPKHIKICEIAIKSSARLVTCKNGSKKFICDICCRTFKHLRFLAEHEKRHDPPGGFLCKYCDKKFCTEAEREKHTEEKHKVFKCQICKEIFETADNYVDHIKILHNGQNREYKSCNNCDRLFSSPLILKYHQDTNCGQNCKFKCDQCDKTFQTKGRLKIHKLTHSGEKNFCCSYCGQTFRHFMNLQSHEFKHTGKKPYQCNVCQKSFSHRASLSTHSTTHTGLKPYLCECCGSRFSCASNIIQHRKKRPDTCGLPKYCMKLAKACPIANLKNLEVEQKLKEEQIKLNTNEKENEGNLLTCFSKEYYDKEKQLDSKSFETEISNPIPNDSPKQCLKKFNNMKIHSENLTTGKKIIKCYKCVDEIFYFKSVYIRHLRSRHHNKSSDEIEKILSELKEDQLNEPKIQQRNDIENEISSDNKIQSKLEIENDDILEENSNISANKSIRCYECNNQSFSQKSEYIRHLRGRCHNKSEEEIEKLIENLYSTKPNLKCNICGKLYTIQYYLQKHLEAHDNPKEEKISNKSDDLQPNVESSKDGKKLIRCYKCTDQVFNQKCLYIRHLRGRHHNKSEEEIEKLLQIINRNGSNLKCKICGKIYSIPYYLKKHLKTHGIEATHKCKLCDEYFLTPIEVLTHTQSEHKDQLTCSICSKKFSDLDSLVRHNQFVHSNKEKKQFICIKCGKKTSSKIALNDHELSNCGQNPIYRCHVCGKGLSTAGILKAHMILHTNEFPYKCSYCDKGFRSNDKLKVHLRSHTGEKPFKCPYCDKAFGHSSTLYIHVSTHTGIKRYMCTTCSDRFSCISGLKAHWRTHPTTCGVDPNRTTKPQLFMGYRKGKLVNKKDIIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -