Este014718.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Empis stercorea
Gene Symbol
su(Hw)
Assembly
GCA_949752835.1
Location
OX457086.1:57136782-57142411[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.11 11 7.5 0.3 1 10 14 23 14 31 0.79
2 14 0.0025 0.26 12.6 1.3 1 20 100 119 100 119 0.95
3 14 5e-06 0.00051 21.1 0.4 2 23 172 194 171 194 0.90
4 14 2.7 2.7e+02 3.1 2.4 1 23 200 222 200 223 0.91
5 14 8e-05 0.008 17.4 2.1 1 21 229 249 229 250 0.94
6 14 4.7e-07 4.8e-05 24.4 1.0 1 23 262 284 262 284 0.99
7 14 3.3e-07 3.3e-05 24.9 0.8 1 23 294 316 294 316 0.99
8 14 3.9e-06 0.00039 21.5 0.5 1 23 322 344 322 344 0.98
9 14 2.1e-05 0.0021 19.2 0.6 1 23 350 372 350 372 0.99
10 14 1.7e-06 0.00017 22.7 2.7 1 23 378 400 378 400 0.98
11 14 6.9e-06 0.0007 20.7 0.7 1 23 408 431 408 431 0.94
12 14 0.001 0.1 13.9 0.7 1 23 438 461 438 461 0.96
13 14 0.0012 0.12 13.7 0.1 2 23 467 488 466 488 0.95
14 14 0.0014 0.15 13.4 1.3 2 23 503 525 502 525 0.97

Sequence Information

Coding Sequence
ATGACAACTAAAAAAACGGAAATAAAGCCTGTTGTAGAGCATGTTTGTAAAAAATGCGATAAAACATTTTTGGATCTTAATCAATTAAAGATGACAACTAAATCGGAAAATAAAGTATTTCGCGTTGTTATCAATGACAATGATGAAATTGATGTTTCCTATGATGATGAAAATAGCCAGGATGGTGGAACTAATAAGGATGATGGAATGATAGAAATGGTACTTGTGGATGAAAATGACGAATATGGTTCTGAAAAAGAAGAAGTAGAAGAAGAGGAGGAGGAAGAAGTTGTAGAGCATGTTTGTAAAAAATGCGATAAAACATTTTTGGATCTTAatgatTTAAAGAGGCATTTACCATTCTGTCGCCAAAATAGTGCTGCTCATATTTTAAAACAACAAATGTACgcgaaaattaatgaaattgaagaagaatgcattcaaattgaaaatgaggataaaatttgttattgttGTGAAGAGAATTATGATTCTTgtcatgcTGGTCATATTCGTTGTCCTGAATGtccaaaatcatttaaaaattctgCTAGCTTCCAACGTCACGTATTTCTTATACATTCCGATATGGAACAATATCCATGTGAAATATGTAATGCCCGTTGTCCATCTGAGCAGATACTTAAAATACATACAGAACATCATCATAGACGTGGTAAACCATTTGCATGTAAAAAATGTGGTAAAGAGTTTACTCGCCGTTATCATGtacttCGGCATGTAAAATTTTCGGGATGTGATGCCGGACATGCGAAAAAAGAATTTGAATGTAATGTTTGTAGTAAAGTATTTTATCGTGTTGATAATTTACGTAGCCATTTAAGAACGCATTTAGGTGAAGATACTAAAACACGTGATTATCAATGTCCATATTGTGAGAAAAGTTTTTATGGAACTTCAactttaaacatTCATATTCGAACACATACGGGGGAACGTCCATTTTCATGTGATTTGTGTGAAAAGgtaTTCCCATCAAATGCCGCTTTGAGAAAGCACCGTCGTTACCATACGGGAGAGAAACCATATGAATGTTCTATaTGTTCTCGATCATTTACTGCCAAAGAAGTTTTAAATCGTCATGTAAAAACTCACACAgGTGAACGTCCACATACCTGTACAATTTGTGGAAAAAGTTTTATTCAAGCTACACAgctaaaaaatcataataaaactCATACTGGCGAAGGATCTGCTTCATTTGAATGTCCTTTATGCGatcaaaaatttaacagaaaatcaaagcTATCAAAACATTTGGTTGTTGATCATTCATCAACAGATGTTGAATTTCAATGTAAACAATGTGATGATAAATTTGTTAGTGCAGCAGGTTTAAAACGTCATGTAACTAGAAAACATACACcaaAGTGGTTGATTTGTCCCATTTGTGATGAAGAGTTTAGTGATCAGGGAAGTTTCAATTTTCATCGTCTAACTCATACAGATGATGAACCAGAAACTCTACCTGTTATTACATTAAATCAATGTAcaatttgttatgaaaatttttcaacTAGTTTGAGATTGAAACGACATGTCAAACGAATTCATAAagatgaagaaaaaattgataCCGAGAAACGTATTCTAAATGGTGTTTCATTACAACAAAACCAAATAACTGAAAAGGTAACAAAAACAACACATAAAGGTGAAATAATTGAAGAATATGTTATTGAAGAATTACAAGAAGATTTGAatgatattgatgatgatgatgacgataaACGTTTAGTCATATATGAAGAGTATAGTAATAATGAAttagaacaaaaaaataaaataaaacaaaaaaattcagaCGATGATTTAGAAATTATTGAATATGATTCAacatatgataaaaatattgacaAAAAGACCGAACTTCAAAATGAGAAAGATGATAATGAAAAAGAATACAATGAAGATGAAGAGGAAGGTGAAGTTTTAATGGTGTTAGAAACCGATAATGTTAAAATGGAAATGGATGATAAATATGAAAGCACACTGGATGATGATGAAAAATTCGATGATAAAATTCGAAAACTTTTAGATTTTCTAGTAGATTCAAAGACTTTGAAAAAATTTGGTTGGCCAAGGTCATCTGCTGAAGATgtaCTTCGTAAAGTCATTCTTAACTGTGGTCATAAATTTACCCATGTTGACAATTCTAATGAATATATTACAAGAATGAGACAATATGTAAAATTACTATTTACAGTTGTTGTTGATAATGATTCAATTAaggaattgttaaataatttaactattgACGAAGTTATTGATCAAGTACTTTCAATGGCAGATGatgattaa
Protein Sequence
MTTKKTEIKPVVEHVCKKCDKTFLDLNQLKMTTKSENKVFRVVINDNDEIDVSYDDENSQDGGTNKDDGMIEMVLVDENDEYGSEKEEVEEEEEEEVVEHVCKKCDKTFLDLNDLKRHLPFCRQNSAAHILKQQMYAKINEIEEECIQIENEDKICYCCEENYDSCHAGHIRCPECPKSFKNSASFQRHVFLIHSDMEQYPCEICNARCPSEQILKIHTEHHHRRGKPFACKKCGKEFTRRYHVLRHVKFSGCDAGHAKKEFECNVCSKVFYRVDNLRSHLRTHLGEDTKTRDYQCPYCEKSFYGTSTLNIHIRTHTGERPFSCDLCEKVFPSNAALRKHRRYHTGEKPYECSICSRSFTAKEVLNRHVKTHTGERPHTCTICGKSFIQATQLKNHNKTHTGEGSASFECPLCDQKFNRKSKLSKHLVVDHSSTDVEFQCKQCDDKFVSAAGLKRHVTRKHTPKWLICPICDEEFSDQGSFNFHRLTHTDDEPETLPVITLNQCTICYENFSTSLRLKRHVKRIHKDEEKIDTEKRILNGVSLQQNQITEKVTKTTHKGEIIEEYVIEELQEDLNDIDDDDDDKRLVIYEEYSNNELEQKNKIKQKNSDDDLEIIEYDSTYDKNIDKKTELQNEKDDNEKEYNEDEEEGEVLMVLETDNVKMEMDDKYESTLDDDEKFDDKIRKLLDFLVDSKTLKKFGWPRSSAEDVLRKVILNCGHKFTHVDNSNEYITRMRQYVKLLFTVVVDNDSIKELLNNLTIDEVIDQVLSMADDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00643437;
90% Identity
-
80% Identity
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