Basic Information

Insect: Empis stercorea
Gene Symbol: -
Assembly: GCA_949752835.1
Location: OX457089.1:11778153-11781385[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0029 0.29 12.5 2.0 1 23 54 77 54 77 0.97

2 20 0.044 4.4 8.7 1.8 1 23 84 106 84 106 0.98

3 20 0.19 20 6.7 1.3 2 23 112 133 111 133 0.97

4 20 0.054 5.4 8.5 0.6 1 21 139 159 139 160 0.94

5 20 5.5e-05 0.0055 17.9 2.4 1 23 191 213 191 213 0.97

6 20 0.00069 0.07 14.4 1.4 1 23 219 241 219 241 0.97

7 20 0.005 0.51 11.7 0.5 1 19 247 265 247 270 0.93

8 20 0.0023 0.23 12.8 2.3 1 23 280 303 280 303 0.95

9 20 6e-05 0.0061 17.7 0.7 1 23 421 443 421 443 0.96

10 20 0.014 1.4 10.3 1.3 1 23 449 471 449 471 0.97

11 20 0.012 1.2 10.5 2.3 1 23 477 499 477 499 0.97

12 20 5.3e-07 5.4e-05 24.2 1.1 1 23 505 527 505 527 0.95

13 20 1.4 1.5e+02 4.0 1.6 1 23 565 587 565 587 0.93

14 20 2.7e-06 0.00027 22.0 1.6 1 23 593 615 593 615 0.98

15 20 0.001 0.1 13.9 0.6 2 23 622 643 621 643 0.92

16 20 0.012 1.2 10.5 3.1 1 23 649 671 649 671 0.95

17 20 4.6e-07 4.7e-05 24.4 0.8 1 23 831 853 831 853 0.98

18 20 8.3e-05 0.0084 17.3 2.0 1 23 859 881 859 881 0.98

19 20 0.00013 0.013 16.7 0.8 1 23 888 910 888 910 0.98

20 20 0.0052 0.53 11.6 2.3 1 21 916 936 916 937 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0029	0.29	12.5	2.0	1	23	54	77	54	77	0.97
2	20	0.044	4.4	8.7	1.8	1	23	84	106	84	106	0.98
3	20	0.19	20	6.7	1.3	2	23	112	133	111	133	0.97
4	20	0.054	5.4	8.5	0.6	1	21	139	159	139	160	0.94
5	20	5.5e-05	0.0055	17.9	2.4	1	23	191	213	191	213	0.97
6	20	0.00069	0.07	14.4	1.4	1	23	219	241	219	241	0.97
7	20	0.005	0.51	11.7	0.5	1	19	247	265	247	270	0.93
8	20	0.0023	0.23	12.8	2.3	1	23	280	303	280	303	0.95
9	20	6e-05	0.0061	17.7	0.7	1	23	421	443	421	443	0.96
10	20	0.014	1.4	10.3	1.3	1	23	449	471	449	471	0.97
11	20	0.012	1.2	10.5	2.3	1	23	477	499	477	499	0.97
12	20	5.3e-07	5.4e-05	24.2	1.1	1	23	505	527	505	527	0.95
13	20	1.4	1.5e+02	4.0	1.6	1	23	565	587	565	587	0.93
14	20	2.7e-06	0.00027	22.0	1.6	1	23	593	615	593	615	0.98
15	20	0.001	0.1	13.9	0.6	2	23	622	643	621	643	0.92
16	20	0.012	1.2	10.5	3.1	1	23	649	671	649	671	0.95
17	20	4.6e-07	4.7e-05	24.4	0.8	1	23	831	853	831	853	0.98
18	20	8.3e-05	0.0084	17.3	2.0	1	23	859	881	859	881	0.98
19	20	0.00013	0.013	16.7	0.8	1	23	888	910	888	910	0.98
20	20	0.0052	0.53	11.6	2.3	1	21	916	936	916	937	0.96

Sequence Information

Coding Sequence: ATgaattcaaatgaatttttcatattacaaCCAGAACGATCAGATTacaatataaatcaaaatacaTCAGATAATAATATTCCCGAAATcgaaatggaaaatataaattctaaaaaaattaaaccaccAGCAtcaataataaatgtaaaaccTAAAATATATTCATGCGATTTATGTAATTGCATTTATGAACGATCAATTGAATTAAAACAACATAAACGTTCAGAACATAAAATCTTAACGAAAACCTATAAATGTGCTAAATGTAGTGatagttttaattttgaaaataattataaaattcatatatatagtcatttaaaaatatgtaaacaaTGTCCAGTatgtttacaaaatttcaaaagaacaacaatatttttaaaacatttaaaaattcatcaaaataatGATTGTTATCAATGTGATAAATGTAAAATGGAATTCGAATTTAAAGAATATTATGATTGgcatttaaatgataataataaatataaaaattgtaatatttcggCAAAAATGGTGAAGaATAAGGAATCgaaagaatataataaaaagataatatcaaaaaaacatgtatgccaaatttgtggaaaaaaatttcaaaaaccaTTCTATTTGAAAAGGCATGAAAATattcatttcaatattaaacCATTTGAGTGTCAAGTATGTTCTAGTAAGTTTAATCAGAAAAACTCATTGGAGCGACATAAATTAGTGCACACTAAAGAGAAACCATATGAATGTCTAAAGTGTAATATGagattttcacAACGTCCAAATTTATTACTTCACGATAAAAATGTACATTCATCTAGTCCAAATGATACAACAAAATATCCATGTCCAAAATGTtcatgtatttttaataaaacaaatagtTTAAATCGTCATATTtctgaaaaacataaattatcattaaatgaTGAATATTCAGTTGAAAATGTAATggaacaattaaaaaattttctaaatcaacaaaattctcaaaatacaaataataataataatgatgaaaatactattaaaaatgAAGTAAAATCTCAatcaatagaaattaaattaccaaaaaataatccaattaataataatataaatttagaaaatataaaaaattctgaaaatattaaacaatCAACTGGAAGAGATGATAATAAAAgtagtattataaaatttgtaagaaTTATTGATACATTAAATCCGaataaagatattaaatataaaatggttcaacaaattattcaaaatgaTCGGAAATGGTTTGCATGTAATGTTTgtgaaaagaaatttaaattatcttatGATTTATTaagACATTTAACTGTTCATACTAAGGAACGAGCTTTTATTTGTGGAATTTGTTCAATagcattttctttaaaaaatacattaaaatgtCATATGAAAGTTCATTCAcgggaaaaaaaatttcattgtactatttgtttttcaaaatttcgttCATTAAACCTTTTAAATGATCACATTTCCGTCCATGGAAAATTAAAACCTTTTCTTTGTCAATTATGTGGTAAATCATTTAATActagttataatttaaaaattcatcagCAAATACATCGTCTCAAAGATAATAGAATTGAAAGTATTGAAAAAACTCTTATACCACCAATTAAAATTCAAgataatgataatattgaagaaggattattagaaaaatttgatgaaaaatttcaatgtttAATTTGTGGTGTATTATTGAAATCAATGtcacatttaaaatttcatgaaAAACAACATCTAAATTTACAAACATTTGAATGTACAATTTGTTATAAAAGATTTATTACGAAAAGTTCGCTAAATGTTCATCgaaaaatacattttacaaatAGATCATTGGAATGTGAATTATGTTCTAGTAAATTTCGAAATTCTAGTGATTTAAAACGACATTCAGTTGTACATAGTAATGAAAGGAAATTTTTATGTCCATATTGCAGTAAGTTATTCAAAACAAAAAGTACTTGTTTAGCACATATAAAATTACATGCTAAAGAACAAATAACAATTGATGATCAGAAATGTACTacaaattataatgaaattgaagaaaataaattggaaaatatgcAAGAAGAAATTAATATTGAACAAGACGATACTCAAGAATATTCATCAATACAgacaaataatgaaataaatttaaatatacaatctCAAGAGATCAATTTGAATAATTACTCACATTTAACAGATAATGATTTAATTGTACCTAATTTGTTATCTGGAAAAACAAATATATCAAGTGAATCAGcaataacaattaataataataattttcaagaaaaagagaaatttattgatttacaagatatacaaaaaacacaaaataatcgattaaaaaataatttcattgtaAAATCAATTCATAAAGAATCACAATTAAATGATACAAATgatatattaattaatgatgATACTAATAATTCATtaccatttaatattaaaattaaattaaagaaaaactttcCATGTGAATAttgtgataaaatatttaaaaaaccaatTGATTATCGTCGTCATATAAGAACACATACAAAAGAAAAACCATTTATATgtgaaatatgtaataaaagatTTAGTGTAAAATGTACATTAGATAATCATATTAAAATACATGATATAAATCGTCAAACATATAATTGTgtagtttgtaataaaaaatatgtatctAAATCAGTTTTAAATACCCATTTACGTTTACATACTGGAGTAATGCCTTATGAatgtaatttatgtttaaaaaaatttcgtacACTTGGTCATCGAAATGCTCATATGTgtattaataataagaaattataa
Protein Sequence: MNSNEFFILQPERSDYNINQNTSDNNIPEIEMENINSKKIKPPASIINVKPKIYSCDLCNCIYERSIELKQHKRSEHKILTKTYKCAKCSDSFNFENNYKIHIYSHLKICKQCPVCLQNFKRTTIFLKHLKIHQNNDCYQCDKCKMEFEFKEYYDWHLNDNNKYKNCNISAKMVKNKESKEYNKKIISKKHVCQICGKKFQKPFYLKRHENIHFNIKPFECQVCSSKFNQKNSLERHKLVHTKEKPYECLKCNMRFSQRPNLLLHDKNVHSSSPNDTTKYPCPKCSCIFNKTNSLNRHISEKHKLSLNDEYSVENVMEQLKNFLNQQNSQNTNNNNNDENTIKNEVKSQSIEIKLPKNNPINNNINLENIKNSENIKQSTGRDDNKSSIIKFVRIIDTLNPNKDIKYKMVQQIIQNDRKWFACNVCEKKFKLSYDLLRHLTVHTKERAFICGICSIAFSLKNTLKCHMKVHSREKKFHCTICFSKFRSLNLLNDHISVHGKLKPFLCQLCGKSFNTSYNLKIHQQIHRLKDNRIESIEKTLIPPIKIQDNDNIEEGLLEKFDEKFQCLICGVLLKSMSHLKFHEKQHLNLQTFECTICYKRFITKSSLNVHRKIHFTNRSLECELCSSKFRNSSDLKRHSVVHSNERKFLCPYCSKLFKTKSTCLAHIKLHAKEQITIDDQKCTTNYNEIEENKLENMQEEINIEQDDTQEYSSIQTNNEINLNIQSQEINLNNYSHLTDNDLIVPNLLSGKTNISSESAITINNNNFQEKEKFIDLQDIQKTQNNRLKNNFIVKSIHKESQLNDTNDILINDDTNNSLPFNIKIKLKKNFPCEYCDKIFKKPIDYRRHIRTHTKEKPFICEICNKRFSVKCTLDNHIKIHDINRQTYNCVVCNKKYVSKSVLNTHLRLHTGVMPYECNLCLKKFRTLGHRNAHMCINNKKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -