Este008448.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Empis stercorea
Gene Symbol
-
Assembly
GCA_949752835.1
Location
OX457085.1:73360326-73365732[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00036 0.036 15.3 2.9 1 23 113 135 113 135 0.98
2 17 0.44 44 5.6 7.5 1 23 170 193 170 193 0.92
3 17 0.014 1.4 10.3 4.2 1 21 200 220 200 222 0.95
4 17 2.7e-06 0.00027 22.0 2.8 1 23 228 250 228 250 0.98
5 17 0.00036 0.037 15.3 0.2 1 23 256 279 256 279 0.97
6 17 0.00028 0.028 15.7 7.2 1 23 285 307 285 307 0.98
7 17 0.00014 0.014 16.6 4.4 1 23 313 335 313 335 0.99
8 17 0.00017 0.017 16.3 3.4 1 23 341 363 341 363 0.97
9 17 0.0096 0.97 10.8 0.9 1 23 468 490 468 490 0.97
10 17 0.27 27 6.3 7.4 1 23 530 553 530 553 0.92
11 17 0.00024 0.024 15.8 2.7 1 23 560 582 560 582 0.99
12 17 4.2e-06 0.00042 21.4 0.8 1 23 588 610 588 610 0.97
13 17 0.00018 0.018 16.3 0.7 1 23 616 639 616 639 0.96
14 17 3.4e-06 0.00035 21.7 1.2 1 23 645 667 645 667 0.98
15 17 4.2e-05 0.0042 18.2 3.2 1 23 673 695 673 695 0.99
16 17 0.0002 0.02 16.1 1.7 1 23 701 723 701 723 0.97
17 17 9.2e-06 0.00093 20.3 0.2 1 23 729 752 729 752 0.98

Sequence Information

Coding Sequence
ATGCCGTCTATGGATAACCCCGTGGGTCGTGTAAGTCCTCAGCACTGTAAATTAAAACTGCCAGATAATTTGGAACAAGAAAATTtagaacaaaattatattccaaATATTAACACAGATGCGgagaaaatatttgttaaaccAACAATTAAGTTAGAGGAGCATACTAAAACTCCAGATTATAATAAtgctgaaaataaaattgatttaaatgcAAATAGTATAAATGAAGTAATTACAAAAGAAatcaataatgaaataaataaagaattaaatgaaATGGATAATTTTGATATTCCAGAAATACCAATTCAATATAGAGATAAAAATGGTTTATATCCATGTAGTTTTTGcacaaaatcatttaaaaaatccgAAGAAGTAGAAAAACATTTTAAGAAACATACTGATTTTAAATCAACAACTCAAGCtgatgattttaatattaatttttgtgacaataatataaataaacttccTGTAGGTAAACGCCAAAAAGATGGTAGATATCATTGTGAATTATGTGATTGTAATTATAGTCAACATTATAATTATCGATCGCATTTTTTACAAGCACATAAACCTCATTTAACTCCTTATAAATGTCCTGATTGTCCATTAACTTTTACAATGCAACACCGTTTTGTAATTCATCGCCGTTGCCATACTGGTGAACGACCATATAAATGTCAACATTGTCCTAGAGCATTTTCAttgaatacaaatttaacaCGTCATATGTTCATACATTTGGGTAAAAAACCGTATATTTGTCGATACTGTGGTAAAGGATTTGCACAACCAATTACACAAAAAGCACATGAACGTAGTATGCATACAAAAGAGCGACCACATCAATGTGAACATTGTGGTAAGGCATTCTaccatttcaatttattaaaagaacaTTTAAAACGGCATACAAATACTCGACCATATCaatgtaaattttgtttgaaatatttctttaataatcaATCATTAAAACGGCATATAAATACACACACTGGTGAGAAAAGTTATGATTGCAATTTATGTTCAAAGAAATTTACAAGTTCTAATACTTTAAGAacacataaaaaattacattcagATATTAAAGAacaTATTTATGAAGAACATTTTATATTAGATGTACCTAGTGACTTAAAACAGCGTGAAAAAAAACATGCAGAAGATGcagaaaaaaactatattaaatcaGAAAGTAAATTGGATAATAATAGTAACTGTAATGATTTTGATGACATTAATACATTGAATTTGGTTATAAATGACAAGAATGAAGTATTTACAgaagaaattaataatgaaataagtGATGCTGATGAAGTAAccaatgaaaatgaaaatatagataTCCCAAAAACACCAATTCTATATAGAGATAAAAATGGTTTATATCCCTGTAGTTTTTGTTCTTTGTCATTTAAAAAATCTGAAGAAatagaaaatcattttataaaacATATTGATTCggaaaaaagtaaaacaaaaaccgatgatagtaaaaataatttttatgataataatataaataattttccatctgAAGATGCAAAAGGTCAACGTCATGAAGATGGTACATATCATTGTGAATTATGTAATCGTAAATATATTCATCACTACAATTATCGTTCACATTTTTTACAAGCACATAAACCAAATTTAAATCCATATAAATGTCCAGATTGTCCATTAACATATACAATGCGACATCGTTTTGAAATACATCGTCGAACCCATACTGGTGAAAAACCATATAAATGTCCACATTGTCCTAGAGCATTTGCAttgaatacaaatttaacaCGTCATGTTTATATACATTTGGGTAAAAAACCATATATTTGTCGATATTGTGGTAGAGGATTTACCCAACAGAATTCACAAAAAGCACATGAACGTAATATTCATACAAAAGAGCGACCACATCAATGCGAACTTTGTGGTAAAGCATTCCCACGATCAACTTTATTGAAAGAGCATTGGAAACGTCACACAAATACTCGACCATTTCAATGCACAATTtgctttaaaaatttcttcaataataCGTCATTAAAACTTCATTTAAATACACATACTGGTGAGAAAAGTTATGACTGTAATTTATGTGCAAAGAAATTTACAAATGCTAATAGTTTAAGAACACATAAGAAATTACATTTGGATACTAAACAGTATCAATGTAAACTTTGCGATAAAGCATTTGCTCAAAACGCTGGACTTTATGGtcatatgaaaatttatcatgATAGTGTTACAAAAACGGATAAttcgatttaa
Protein Sequence
MPSMDNPVGRVSPQHCKLKLPDNLEQENLEQNYIPNINTDAEKIFVKPTIKLEEHTKTPDYNNAENKIDLNANSINEVITKEINNEINKELNEMDNFDIPEIPIQYRDKNGLYPCSFCTKSFKKSEEVEKHFKKHTDFKSTTQADDFNINFCDNNINKLPVGKRQKDGRYHCELCDCNYSQHYNYRSHFLQAHKPHLTPYKCPDCPLTFTMQHRFVIHRRCHTGERPYKCQHCPRAFSLNTNLTRHMFIHLGKKPYICRYCGKGFAQPITQKAHERSMHTKERPHQCEHCGKAFYHFNLLKEHLKRHTNTRPYQCKFCLKYFFNNQSLKRHINTHTGEKSYDCNLCSKKFTSSNTLRTHKKLHSDIKEHIYEEHFILDVPSDLKQREKKHAEDAEKNYIKSESKLDNNSNCNDFDDINTLNLVINDKNEVFTEEINNEISDADEVTNENENIDIPKTPILYRDKNGLYPCSFCSLSFKKSEEIENHFIKHIDSEKSKTKTDDSKNNFYDNNINNFPSEDAKGQRHEDGTYHCELCNRKYIHHYNYRSHFLQAHKPNLNPYKCPDCPLTYTMRHRFEIHRRTHTGEKPYKCPHCPRAFALNTNLTRHVYIHLGKKPYICRYCGRGFTQQNSQKAHERNIHTKERPHQCELCGKAFPRSTLLKEHWKRHTNTRPFQCTICFKNFFNNTSLKLHLNTHTGEKSYDCNLCAKKFTNANSLRTHKKLHLDTKQYQCKLCDKAFAQNAGLYGHMKIYHDSVTKTDNSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-