Este009325.1
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- -
- Assembly
- GCA_949752835.1
- Location
- OX457085.1:88174093-88178491[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.26 26 6.3 1.3 1 23 119 142 119 142 0.97 2 19 0.1 10 7.6 0.5 1 23 221 245 221 245 0.96 3 19 2.4e-05 0.0024 19.0 2.6 1 23 253 275 253 275 0.97 4 19 0.0032 0.33 12.3 3.4 1 23 281 303 281 303 0.99 5 19 0.00023 0.024 15.9 0.6 1 23 309 332 309 332 0.93 6 19 1.3e-07 1.3e-05 26.2 1.5 1 23 338 361 338 361 0.97 7 19 0.012 1.2 10.5 0.5 1 23 370 392 370 392 0.97 8 19 0.00011 0.011 16.9 1.4 1 23 398 420 398 420 0.98 9 19 4.3e-05 0.0044 18.2 0.4 1 23 426 448 426 448 0.98 10 19 0.0066 0.66 11.3 5.1 1 23 644 667 644 667 0.96 11 19 6e-05 0.0061 17.7 1.1 2 23 672 694 671 694 0.95 12 19 0.0021 0.21 12.9 1.5 1 23 755 778 755 778 0.97 13 19 6.3e-05 0.0064 17.7 2.1 2 23 798 819 798 819 0.98 14 19 3.5e-06 0.00035 21.6 1.4 1 23 825 847 825 847 0.99 15 19 0.00016 0.016 16.4 2.4 1 23 853 876 853 876 0.98 16 19 4.4e-05 0.0044 18.2 0.9 2 23 883 905 883 905 0.97 17 19 0.011 1.1 10.6 0.9 1 23 914 936 914 936 0.97 18 19 0.00031 0.031 15.5 4.3 1 23 942 964 942 964 0.97 19 19 9.4e-07 9.5e-05 23.4 0.2 1 23 970 992 970 992 0.96
Sequence Information
- Coding Sequence
- atgaataatataattGGTAATTTAAAACAAGATCCAGATAAACAACATAATAATATattatacgattcaaataaaattgatagtactgttaaagaagaagaagatattaatacaaaaatacaaGATCCACTTAGTgtacaaaattacaaatttgaagTGGAATATTTAGATGagaataatagtaataataataataatgatagtcAAGATAAATTATCAATACATTCagattctaataataataataataataataataataataaaaaaaataatagcaataaaaaatgtaattcaaCAAAATCAACTATTTATTATGAGAAAccaccaaaaatattaaatgataataatgaatatCCATGTACACaatgtgaaaataaatataatatttataaatcattaCGAGATCATTTTCGTATAAATCATACAAAATTATGTTCATATTGTTCGGTTagatgtaatataaaattattagaaattcatttaaaagaaCAACATccaaatgaagaaaattatgcaataacaacaaatttaaataatcaacgAAAATCaattgatgataaaaaaattatggatttaaattcaaataaagaatataatgaaacaaaagaaataataaataataatgaacctGTTAGAATGCAAAATTCTGATGGTcgttatatatgtacattatgtgATGATATTACATATGCtagatttgaaaatattaaaaaacattatcgTAGTgtacatttagcaataaaaaaatcaagACATTATTGTAGTGAAtgtgataaaaattattattcaagttTTCAATTACGTGCACATATGAATATACATAAAGGTTTAAGACCATATAAATGTCATATATGTTCAGCTGATTTTACACAtccacaatatttaaattttcatattcgtATACATTTAAATGATAAACGTTATCCATGTAAATATtgtggtaaaaaatttatacgaCCATATGAGAGGGTATACCATGAACGGGCAAATCatacaaatgaaaaattatatcaatgtGATGATTGTggtaaaacatttattaaaaattcacaattaacacgacataaaaatattaaacataatccAAATTATATACGACCATTATATGAATGCGATATATGTATTAATTCATTTACAACAAAAGAATCTATgctaaaacataaattaatacaTGAAGGTAAAAAACCATTTGAATGTGATATTTGTGGTAGTAAATTTCGTGCACAACATAATCtcaatgtacataaaaaaattcattcaaatgttaaaaattatgtttgtaaaatatgtaataaaagatTTGCCCAAGGTCCAGGTTTATATAGTCATATGAAATCACATGcAAAACGTAAATGGTCATCATTACGTGATAgatatgttaaatataaaaagaaaattaatataaataatagtatgGATGAATCAAATTGGGAATATTTTGAAGATATGAAATTTTTAGATGATCATTTAATGAAAAAGagaaaacaacGACATACAACAAATATTACAAAAGGAAAAAATGAAGATAAAGATAAAtgtaataatacatattatgatgaaGATgataaaagtattttaattgaagaaaatatACCATGCAAATTTGAAGGAGATCTAACCACCCTACCAAATGATTATTTAGAGTTAGACCATCAAgataattatttagattttgaaCGTAACAATAATAATGATGTTGATGATAATACTTCAATTATACAATcaccaacaacaaataatattgaatatgaaATATTAGATGATAATTCCGCATATACTGAAgatataaatgatttaaataaaaatgataatttaaataaaaatgataatttaaatatagatgatgataataaatcatcatcattaatattatcaacagttaaattaccaaaattaccaacaaaagaattaaatgaaaataatgaatatttttgtacaGAATGTAATAAAActtatacaatatataaatcATTACAAAATCATTTTCGTATATGTCATTCAACAACAAGTACatgtaaaatatgtaataaatcattttataaatataataatttattaacacaTATTAATGAAGAGCATATAAAATCTAattcaacaatattaaataatgataataatgaaattttagatGAAGATGATAATATTATTGAAGAGAaaccaaaagaaaataataataataataataataatataaataatgatgataataattcattttttattgatCAACCAGAACGTATTAAAGATAAAAATGGTCGATTTATATGTACAAAATGTGATATAACATATGCtagatttgaaaatattaaattacattatcgTAAATATCATTTaggtgaaaattatattaatgataaaccagatataattattgataaaataccagaaaaatgtgaattatgtaataaattatttaaatcaaaatttcaattacgCCTACATATgaatgtacataataataaaagaccatataaatgtaaaatatgtgGTGTTGATTTTACACAtccacaatatttaaattatcatatacGTATACATACAAATGATAAACGTTATTCATGTGATTattgtgataaaaaatttatacgtaaatttgataaaatttatcatattagATCACAGCATACAATGGAAAAACCAGCACAATGTGATGATTGTGGTCAAACATTTACGAAATATGCTCAATTaacaatacataaaaataaatatcataatccaaattatataaaaccagAATATATATGtgatatatgtaataaaaaattaacaacataTCAAGCaatgaaatatcataaattaatacATACTGGTGAGAAACCACATCAATGTAATATATGTTTACTTAGTTTTCGTAAACGTAGTAATTTAAATACACATAAAAAACTACATTCgaatattaaagaatatttatgtaaattatgtgGTAAAGAATTTTCACAAGCAGCTGGTTTAAATATTCATATGAAAACACAtgtttag
- Protein Sequence
- MNNIIGNLKQDPDKQHNNILYDSNKIDSTVKEEEDINTKIQDPLSVQNYKFEVEYLDENNSNNNNNDSQDKLSIHSDSNNNNNNNNNNKKNNSNKKCNSTKSTIYYEKPPKILNDNNEYPCTQCENKYNIYKSLRDHFRINHTKLCSYCSVRCNIKLLEIHLKEQHPNEENYAITTNLNNQRKSIDDKKIMDLNSNKEYNETKEIINNNEPVRMQNSDGRYICTLCDDITYARFENIKKHYRSVHLAIKKSRHYCSECDKNYYSSFQLRAHMNIHKGLRPYKCHICSADFTHPQYLNFHIRIHLNDKRYPCKYCGKKFIRPYERVYHERANHTNEKLYQCDDCGKTFIKNSQLTRHKNIKHNPNYIRPLYECDICINSFTTKESMLKHKLIHEGKKPFECDICGSKFRAQHNLNVHKKIHSNVKNYVCKICNKRFAQGPGLYSHMKSHAKRKWSSLRDRYVKYKKKININNSMDESNWEYFEDMKFLDDHLMKKRKQRHTTNITKGKNEDKDKCNNTYYDEDDKSILIEENIPCKFEGDLTTLPNDYLELDHQDNYLDFERNNNNDVDDNTSIIQSPTTNNIEYEILDDNSAYTEDINDLNKNDNLNKNDNLNIDDDNKSSSLILSTVKLPKLPTKELNENNEYFCTECNKTYTIYKSLQNHFRICHSTTSTCKICNKSFYKYNNLLTHINEEHIKSNSTILNNDNNEILDEDDNIIEEKPKENNNNNNNNINNDDNNSFFIDQPERIKDKNGRFICTKCDITYARFENIKLHYRKYHLGENYINDKPDIIIDKIPEKCELCNKLFKSKFQLRLHMNVHNNKRPYKCKICGVDFTHPQYLNYHIRIHTNDKRYSCDYCDKKFIRKFDKIYHIRSQHTMEKPAQCDDCGQTFTKYAQLTIHKNKYHNPNYIKPEYICDICNKKLTTYQAMKYHKLIHTGEKPHQCNICLLSFRKRSNLNTHKKLHSNIKEYLCKLCGKEFSQAAGLNIHMKTHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -