Este025253.1
Basic Information
- Insect
- Empis stercorea
- Gene Symbol
- -
- Assembly
- GCA_949752835.1
- Location
- OX457089.1:11277426-11279222[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.3e-05 0.0013 19.8 0.7 2 23 5 26 4 26 0.97 2 21 9.7e-07 9.8e-05 23.4 0.4 1 23 32 54 32 54 0.98 3 21 4.5e-05 0.0046 18.1 2.1 1 23 60 82 60 82 0.98 4 21 1.9e-06 0.00019 22.5 1.5 1 23 91 113 91 113 0.99 5 21 5.5e-07 5.5e-05 24.2 1.8 1 23 119 141 119 141 0.97 6 21 4.7e-07 4.8e-05 24.4 1.8 1 23 147 169 147 169 0.99 7 21 9.6e-07 9.7e-05 23.4 0.8 1 23 175 197 175 197 0.99 8 21 4.7e-05 0.0047 18.1 1.8 1 23 202 224 202 224 0.98 9 21 5.2e-06 0.00052 21.1 1.2 2 23 234 255 233 255 0.97 10 21 2.6e-07 2.6e-05 25.2 1.8 1 23 261 283 261 283 0.98 11 21 1e-06 0.0001 23.3 2.0 1 23 289 311 289 311 0.98 12 21 1.5e-06 0.00015 22.8 0.7 1 23 317 339 317 339 0.98 13 21 2.5e-05 0.0025 18.9 3.1 1 23 344 366 344 366 0.98 14 21 4.3e-06 0.00044 21.3 1.3 2 23 376 397 375 397 0.97 15 21 2.8e-05 0.0028 18.8 1.9 1 23 403 425 403 425 0.97 16 21 3.4e-05 0.0034 18.5 4.0 1 23 431 453 431 453 0.99 17 21 5.5e-06 0.00056 21.0 1.5 1 23 459 481 459 481 0.98 18 21 6.2e-05 0.0063 17.7 5.0 1 23 487 509 487 509 0.98 19 21 1e-06 0.0001 23.3 2.8 1 23 518 540 518 540 0.98 20 21 7.8e-06 0.00079 20.5 3.7 1 23 546 568 546 568 0.97 21 21 6.4e-05 0.0064 17.7 1.0 1 23 574 597 574 597 0.95
Sequence Information
- Coding Sequence
- ATGAAACGTATTCAATGTGAATATTGTGATTTATCATTCAGAAAGATGAATGAATTTGAAAGGCATATGAGAGGTCATACTGGTGTTAAACCATATCCTTGTGATATATGTGGCAATTCCttttcaacatcatcatcattattccTACATAAACGTGTACATAATCCAGAAAAGCAATTTAAATGTAACCTTTgtgaaaatagttttaaaagaaaatcaacTTTAGACGCTCATAAATTAACCCATGACATAAATTATGTATGCATTGAATATAAATGTGATATTTGCGAGGAAACTTTTAAAAGCAATAATATGCTTGAAACCCATAGACGACGCCATACGAAGGAGAAACCTTTTCAATGTGATATATGTAAAAAGGGATTTTCGGATAAGTCGAATATGAAACGACATAGATTATTACACACCGATAACAAACAATTTGAATGTGACTATTGTGGAAGTTCTTTCAAACGTTTCAACCAATTAGAAAAGCATATAAGGACTCATACTGGTGAAAAACCATTTCAGTGTGATATATGTGGAAATTCATTCTCGAATTCATCGGCATTGTTCCTACACAAACGTTCACATAATGCAGAAGTATTTAAATGTGAATTGTGTGAAAGTTCTTTTAAGAGAAAATCATCCCTGGAATCTCATAATTTAACTCACAATGAAAATTAtgtagaaattaaattgaaatgtgAGTGGTGCCCCGAaacttttaaaacaaataatatgcTTGAAAGACATAAACGTCGCCATACTAAAGAAAAACCTTTTCGATGTGAAATTTGCAATAAGGGATTTTCAGAAAAGTCGAATTTGAAACGTCATAGACAATTACATACTGATGACAAACACTTTGAATGTGATTATTGTGGAAGTTTTTTCAAACGTTTCAGCCAATTAGAAAAGCATATTCGGAGTCATACTGGTGAAAAACCATTTCCGTGTGATATATGTGGAAATTCTTTTTCGAATTCATCGTCATTGTTCCTGCACAAACGATCACATAATGCCGAAGTATTTAAATGTGAATTGTGTAAAAGttcttttaaaagaaaatcatcCCTTGAATCTCATAAATTAACtcataatgaaaattatgtagaaattaaattagaatgTGATTGGTGCCCTGAAACTTTTAAAACTAATTGTATGCTTGAGAGACATATACGGCGACATACGAAAGAAAAACCATTCCACTGTGACATTTGCAGTAAAGGATTTGCTGAAAAATCAAGCTTAAAACGTCATAAACTGATACACATCGATTTTAAACCATTTCAGTGTAATTACTGTGCTGCTTCATTCAGACGATGTAAGGAatttgaaaaacatattagaatgCATACGGGTGAAAAACCATATCCTTGTGATATATGTGGAAATTGTTTCTCaaattcatcatcattatttctACATAAACGTGCTCATAATCCAGAAAAACCATTTAAATGTAATCATTGTACAAATACTTTTAAACGTAGATCAACTTTAGAAGCACATAAATTAAgtcatgaaaaaaattatgtaataaataaatttgaatgtaATACGTGCtcagaaaattttaaaactaatagtATGCTGCAAAGGCATCAACGTCGCCATACCAAAGAAAAACCTTTTTGTTGTGAAATTTGCAATAAAGGTTTTTCAGAAAACTCAAGCTTAAAACGACATAAACGATTGCACACTAATGTTAAGccttttaaatgtaaattttgtgaaaaagcATTTTCTGGAAGTGCTCTTTTAAAAACACATATAACTCTTTATCATACTTAA
- Protein Sequence
- MKRIQCEYCDLSFRKMNEFERHMRGHTGVKPYPCDICGNSFSTSSSLFLHKRVHNPEKQFKCNLCENSFKRKSTLDAHKLTHDINYVCIEYKCDICEETFKSNNMLETHRRRHTKEKPFQCDICKKGFSDKSNMKRHRLLHTDNKQFECDYCGSSFKRFNQLEKHIRTHTGEKPFQCDICGNSFSNSSALFLHKRSHNAEVFKCELCESSFKRKSSLESHNLTHNENYVEIKLKCEWCPETFKTNNMLERHKRRHTKEKPFRCEICNKGFSEKSNLKRHRQLHTDDKHFECDYCGSFFKRFSQLEKHIRSHTGEKPFPCDICGNSFSNSSSLFLHKRSHNAEVFKCELCKSSFKRKSSLESHKLTHNENYVEIKLECDWCPETFKTNCMLERHIRRHTKEKPFHCDICSKGFAEKSSLKRHKLIHIDFKPFQCNYCAASFRRCKEFEKHIRMHTGEKPYPCDICGNCFSNSSSLFLHKRAHNPEKPFKCNHCTNTFKRRSTLEAHKLSHEKNYVINKFECNTCSENFKTNSMLQRHQRRHTKEKPFCCEICNKGFSENSSLKRHKRLHTNVKPFKCKFCEKAFSGSALLKTHITLYHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -