Eliv015546.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- XNP
- Assembly
- GCA_963932195.1
- Location
- OZ010649.1:8081911-8107926[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.18 11 6.9 1.8 1 23 1400 1422 1400 1422 0.97 2 12 0.022 1.3 9.7 2.4 1 23 1428 1451 1428 1451 0.92 3 12 0.2 12 6.8 0.0 5 23 1453 1471 1452 1471 0.93 4 12 0.0013 0.077 13.7 3.0 1 23 1637 1661 1637 1661 0.96 5 12 0.00078 0.047 14.3 0.4 2 23 1687 1708 1686 1708 0.97 6 12 1.1 66 4.4 4.1 1 23 1716 1739 1716 1739 0.95 7 12 0.00041 0.025 15.2 0.5 2 23 1744 1766 1743 1766 0.95 8 12 0.0017 0.1 13.3 0.1 1 20 1779 1798 1779 1800 0.93 9 12 0.00027 0.016 15.8 1.2 1 23 1808 1830 1808 1830 0.98 10 12 0.0074 0.45 11.2 3.9 1 23 1836 1858 1836 1858 0.98 11 12 2.9e-06 0.00018 22.0 0.2 1 23 1864 1886 1864 1886 0.98 12 12 0.013 0.77 10.5 1.3 1 23 1892 1914 1892 1914 0.98
Sequence Information
- Coding Sequence
- ATGGATGATTTTAGTGATGGTTCAAACACGGATATGGAAGATAATTTAGCAACGGAAAAAGAATTCTTAGTAAGGCGAAATGAAGATTTAAAACAATCTTTATTAGATACTTCAAGTAGTGATTCTGATACGTGCAGTGAAAGGATAACActagaaaatgaaaacaatgATTCTAACACATCATTGGTACTGAAATTTCTTGAAACGTAcgatattgaaaatgaaaacaatGACGAAAATAATGAAGTATATAATCCAATcgtatatcaaaatatatcaaatccTGATAAAGACGCAGATAgcgaaattaataataatcaaaatcatGGAGAAAGTACGTTTGAAGACTTAccagaaattgaaaaaaacagTATTTTTGATAAGTCATTCgttaaaaaaccaacaaaagaaaaatcttttgaaTCATTATTAACTGAAAATGAACGACGAAGAAagtacttaaaatataatgaggAATTAATCAGTCTCAGCTCTGAAGAGTCCGAGTTAGAAGGAAATAAAACTGATAGTGAACAACATAGTCGTATATTACGACCAATGATGCGGCAAGATCAGTTAGCAAGCGAAACTAAGGTAGcacaaaaagaagaaaataatcgTATTTTACGTTTGAAgaataaggaaaatatttttaaaaaagcataCAAGGAACACCAAATTGATCGTTCTAATATGAAAGAACTTATTTTagattatgatttaaaatcaaaaaaatttatcaaagttCATCCTGAATTATTCAAACACTTAAAACAGCATCAGATTGAAGGCATCAAATTCATGTATGATGCTTGTTATGGtagtgttaattttattaatgaacaTCCTGGATCCGGATGTATTTTAGCGCATTGTATGGGATTAGGAAAAACTTTACAAttaattacACTTCTTCATACCGTCATATGTAATAAAGAGTTGAAAACGTCCAGGATTCTCGTTTTATGTCCAAAAAGTACAGTAATGAATTGGGCAGATGAAATGCAACGATGGCTAGCAcctttaaatactaaaaacattaaaatatatacgttTAGTGATACTTCggatgttaaaaataaactttcaatattaaaagaatGGGCGAGCTCAGGCCAACCAGGGTTTCGAGATTCAGGTTGTCTTCTTATTGGATATGAAGCGTTTAGAACATTAGTATCATATCATACTTATAGGAAACGTAGTAGTTATTTAACTCAGTCAGACTTAGAAGCCATTCAAAAAACAGTTAAAGAAACTCTTCTACAGCCAgGGGCAGATTTAGTAGTATGTGATGAAGGACATAttatcaaaaacagaaaagctgCTATAAGTCAAGCTGTAACCGAAATTACTACGCCTCGAAGAATTATTTTGACAGGAACaccaattcaaaataatttaaaggaatATTACAGTatggttaattttattaaaccttCTTTCTTGGGAACTGAAAAGGAATTTGCTAATCTTTATGCAAATCCCATTCGGTACGGACAGCATAAGGATTCAAATAAACgcgatattaaaataatgaaacaacGGTCATTTGTTTTGCATAAAAAACTTTCTAGTTTCGTTCAGcGGAGGGAGGCTGCCTtgttgaaaacatttttaccACATAAATTTGAGTACGTGCTTTTTATACCCTTATCAAAAGTTcaatctcaactatatgaaatttttcttgaatCAGTTTCGAAACGTGACGACTCTAAAGGACGAAGTCTTCTAACGGATTATACGTGCTTACGGAAGATATGGACACATCCCAAAGTATTGGAAAATGCTTGGTTAAACGCTACCATGTTAAAGCAGAAGAAAGAAAAGAGAAATACCAATTTAATGATTCAGTCAGAAGATGATGAACCAGATGACATTTATGACAGTCAAACTGGCTTAATGTCAGTAACAAGTGATTGGTGGCGATCTCATCTTACTAAACAGGATTTAGAGAGTATTGTTCCTAGTAATAAGCTGCAAGCCATGTTTGAAATTCTAAAGATGTGTGAAGAAAACCGGGAAAAATGTTTGATTTTTTCTGCGTTCGTTGCTGTTTTAAATGTTGTGGAATATTTCATGAAGTTGATTAACAATAATGACTTTTCTACACCTAACGAAGgtttaggcattggaaaatttaaaggaCCGTGGATAAATGGAGAAGATTATTATAGATTAGATGGAAAAACACCAAAAACTCTAAGGCATGAGATGGTTAAGAGTTTCAATAATCCAAACAATATTAGAGCGAGagTATTTCTTATATCTGCGAAGGCAGGAGGTCaaggaattaatttaataggtGCGAACAGAGTACTAATTTTAGATACATCTTGGAACCCTTCTAATGACCAACAGaacatatttagaatttttcgtTTGGGTCAAACACGAAATTGTTACATATATCGCCTAATCTCTTTGGGTACTATGGAAGAGAAAGTATATTCGAGATCTGTTACAAAACAAGCAATGAGTTTTAGAGTAGTTGATGAACATCAAATTGATCGACATTACAGTATGGCTGAACTAGCGGAATTGTATACTTTAACTTACTATGGTGAACGTCCAGTGCCATTTTTACCACAAGACAGCATTTTAGCTAATCTTCTTCGGAATCATTCTAATTTGGTTTACAAATATCATGAGCATGACAGTCtcctagaaaataaaatagaacaaGAGTTAAGTGAGCAAGAAAAAGAAGATGCTTGGCTTGCTTATGAACGTGATACAAATTATAATGCagCTATCACAGGAGGAATTTTACCGCAATTTGGAagatttgatGTTTTTGGAAATCAAACATTCATTCCACCAAGTGAATATACTACTAGTAATAACTTAGCAGATATAGCTTTCAACCAACGAGGTATAACACAACATCCAACCCAACCACCGTTTTTATCTAGTTATCGATTTCCATCTAAtgattattatattgattcattatataaaatgtctCAAAATCCTCAAAGCTATTCTTCTTCGATGTTAGGAATGGACGCTATAAATACACAATGTGCTCCTAATAACAACCCAAGAGTAGTAAGCAGCACCAGTTTAATATCAAATACACCTAATACATTAAACTATTGTAATTCTCTGTCACCATTTGTTAACActtcccaaaatatttctgctGAAATCAACAGCTTAAATCAATCCCATTACGGCACGTCTACATATTCTCCGTCAATTTTAAACCATTTTGGTCACTCGtcattaatggaaaatttaaaaaaaacacttgaaaattattccaataaaaatagtaCTGGGTCTGGAGTACGGGTCCAAAAGGTAGCAACAACAggtattcaaaataaaaatccattcCAACCATCATTTCTAACTAATGATAGCTCAGTATTGCCTAATAATACAACCACAGTAGATGCAATACCTCCAATACCAACAAGtgttataatgaaaaatgatttacttttgaaacaatttaatGATCAAATTAAATCAGCTACAGGTTCAAAGAACcgttataatttaattaataaatcaaatatgttGAGACCAGTTATGAAAACAGGGAAAGCTGATAGCATAAATTGTCTTGCAACTGATAATAATATATCgctaattaaatctaaaaaaaataaaaacaatgaaataaaaactttacatACTATGGGAAAACAAAATCATACTACATTAATTAGACCTGAAGAATCAGGAAATTCATATAAACCAATTACTGCCGCAAACAGTACTTATATAACAGGTTTAAAACCCAATATGACAGAACCAAAGGATAATaagaaagaagaaaattctGTGCTAGCAAAATCATCGGGCATtctattaattgaaaatcaaacaaatccattattaaataattgcaaTGAGGAAACCGCAGcagtagaaaatatttctcgGTTAAACAACCTTACTGCTAATAAAACTGGTGCAGCGACgaaatcaataaattctttGCCAGTGAACTTTCTTACTCTACTGGAAGACGAGGATATGAATtatgatgaaattaaaaatatcgatTGGTCCGATTCAGAGGATTCTAATGATGCATTCAGTAACTCGAAGGAAGCTCGTTGTAGTTATTGTTgtaaaatattcttaaatcaGTTGCAAATTACTAAACATGAAGGAACATGTGAAATAGCTATTAATTGTACCGCACGGAAGGTAACATGTAAGGATGGGACTTCGAAGTTTATATGCGATATTTGTTGCCGGACATATAAATATGCAAATAGCCTTGCAGAACATGAAAAACGACATAAAGAACCAGGTGGATTTGCatgtaaatattgtaaaaatagcTTTTGCTCTGAAATTCAATTAGAACAGCACACGGAAGAGACCCATAAGatttgTGGTAAGACGTTTGCATATGGAGAAAGTTTAGTAACTCATAGTTCTGTTCACACTGGTATTAAACCATATTTATGTGAATGTTGTGGGTCTCGATTTTCATGTACTGGTAATTTGTTAGCACATCGCAGAAAAAGATTAGATACTTGTGGACAGCCCCAATATTGCACAAAGTTAGCAAAAGCGTGTCCTCGACCAAGTATTAAAACCCATGAACCATCAAAATCTTTAGTAATAAAAGCTCATAAAGTATTAAAAGATGTTgaaacaattaaaacaaagaaaaccAGAATAAagtattttaatacaagaaaaaagttTACCAATAAAACAAACATAATTGGCGGTAGAAGATCTGAAAAGTCTGGtcattctaataaaattggaaatgaCAATCCTTATAATAACACTAGTGATGATAACATAGAAAATAAGAATGATAcaagtattaaaaattctttaagaaATTCCCTAGAAATTAATCGATTAAAAGAAGCAagtaattatgttaatatggcagtagaaaataaaacaatagtACAAGAAAGATTTGAATGTTCTGAATGTTTTAGAAAGAGTTTTAGAAGGAAATCAACTTTTATTCGACATTTACGTAACATTCATAAAAAAGCATCAACTGAAATTTGGAAAATCTTATTGGTTAATAGCGATAAAACTCATGATAATTCTATAGATTTACAATGTAAAATTTGTGGGAAATTATATTCACTTGTGAAAACTTTAGAAAAACATATACAAATGCATgGTCCGGATGGTAGTCTCATACATACATGCCGTTCCTGCAGTAagtattttgcaactaaagaAGAAGTTCACACACATACAGTGACTGAACATAAAGATAAAATCACATgtgtaatatgtaataaaatatataaagatgCTGAACTGTTACAAGCACATCATCGTTATTCTCATTCTGATGCTCCAagtgaaaaaccaaaaaaatatacgttTATTTGTAACAAATGTGGTAGAACAGTATCAAGCCGTACAGCTTTAACTAATCATGAATTATCTGATTGTGGGAAAAATCCTATACATAAATGTAATGTTTGTGGAAAAGGTTTACATAGTGCTGGTTCATTAAAATCTCATATGCTTGTACATTCAGGAGAATTGGAatttaaatgtcaattttGTGATAAAGGTTTTGCGCGGAAAGGTCAATGTCAGATACATGAACGAAAGCATACTGGGGAGAAACCATTTCCTTGTACGtaCTGTGATAAAGCATTTGCTTATCgtgaaaatttacttattcaTATTTCGACTCACACCGGTCTAAAACGGTATATGTGCAATAGCTGCGGTGAAAGATTTTCTTGTGTAACAGGGTTAAAAGCACATTGGCGTACACATGCTCGGACTTGCGGAGCTGATCCAAATCGTTCAACAAAAGCTACTGGTATTTATTTAGGATTTCAAAAAGGGCAACTAGTTCATACGAAAGAACCAACAGAaacttgtttaaaataa
- Protein Sequence
- MDDFSDGSNTDMEDNLATEKEFLVRRNEDLKQSLLDTSSSDSDTCSERITLENENNDSNTSLVLKFLETYDIENENNDENNEVYNPIVYQNISNPDKDADSEINNNQNHGESTFEDLPEIEKNSIFDKSFVKKPTKEKSFESLLTENERRRKYLKYNEELISLSSEESELEGNKTDSEQHSRILRPMMRQDQLASETKVAQKEENNRILRLKNKENIFKKAYKEHQIDRSNMKELILDYDLKSKKFIKVHPELFKHLKQHQIEGIKFMYDACYGSVNFINEHPGSGCILAHCMGLGKTLQLITLLHTVICNKELKTSRILVLCPKSTVMNWADEMQRWLAPLNTKNIKIYTFSDTSDVKNKLSILKEWASSGQPGFRDSGCLLIGYEAFRTLVSYHTYRKRSSYLTQSDLEAIQKTVKETLLQPGADLVVCDEGHIIKNRKAAISQAVTEITTPRRIILTGTPIQNNLKEYYSMVNFIKPSFLGTEKEFANLYANPIRYGQHKDSNKRDIKIMKQRSFVLHKKLSSFVQRREAALLKTFLPHKFEYVLFIPLSKVQSQLYEIFLESVSKRDDSKGRSLLTDYTCLRKIWTHPKVLENAWLNATMLKQKKEKRNTNLMIQSEDDEPDDIYDSQTGLMSVTSDWWRSHLTKQDLESIVPSNKLQAMFEILKMCEENREKCLIFSAFVAVLNVVEYFMKLINNNDFSTPNEGLGIGKFKGPWINGEDYYRLDGKTPKTLRHEMVKSFNNPNNIRARVFLISAKAGGQGINLIGANRVLILDTSWNPSNDQQNIFRIFRLGQTRNCYIYRLISLGTMEEKVYSRSVTKQAMSFRVVDEHQIDRHYSMAELAELYTLTYYGERPVPFLPQDSILANLLRNHSNLVYKYHEHDSLLENKIEQELSEQEKEDAWLAYERDTNYNAAITGGILPQFGRFDVFGNQTFIPPSEYTTSNNLADIAFNQRGITQHPTQPPFLSSYRFPSNDYYIDSLYKMSQNPQSYSSSMLGMDAINTQCAPNNNPRVVSSTSLISNTPNTLNYCNSLSPFVNTSQNISAEINSLNQSHYGTSTYSPSILNHFGHSSLMENLKKTLENYSNKNSTGSGVRVQKVATTGIQNKNPFQPSFLTNDSSVLPNNTTTVDAIPPIPTSVIMKNDLLLKQFNDQIKSATGSKNRYNLINKSNMLRPVMKTGKADSINCLATDNNISLIKSKKNKNNEIKTLHTMGKQNHTTLIRPEESGNSYKPITAANSTYITGLKPNMTEPKDNKKEENSVLAKSSGILLIENQTNPLLNNCNEETAAVENISRLNNLTANKTGAATKSINSLPVNFLTLLEDEDMNYDEIKNIDWSDSEDSNDAFSNSKEARCSYCCKIFLNQLQITKHEGTCEIAINCTARKVTCKDGTSKFICDICCRTYKYANSLAEHEKRHKEPGGFACKYCKNSFCSEIQLEQHTEETHKICGKTFAYGESLVTHSSVHTGIKPYLCECCGSRFSCTGNLLAHRRKRLDTCGQPQYCTKLAKACPRPSIKTHEPSKSLVIKAHKVLKDVETIKTKKTRIKYFNTRKKFTNKTNIIGGRRSEKSGHSNKIGNDNPYNNTSDDNIENKNDTSIKNSLRNSLEINRLKEASNYVNMAVENKTIVQERFECSECFRKSFRRKSTFIRHLRNIHKKASTEIWKILLVNSDKTHDNSIDLQCKICGKLYSLVKTLEKHIQMHGPDGSLIHTCRSCSKYFATKEEVHTHTVTEHKDKITCVICNKIYKDAELLQAHHRYSHSDAPSEKPKKYTFICNKCGRTVSSRTALTNHELSDCGKNPIHKCNVCGKGLHSAGSLKSHMLVHSGELEFKCQFCDKGFARKGQCQIHERKHTGEKPFPCTYCDKAFAYRENLLIHISTHTGLKRYMCNSCGERFSCVTGLKAHWRTHARTCGADPNRSTKATGIYLGFQKGQLVHTKEPTETCLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -