Eliv008188.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- Sall1
- Assembly
- GCA_963932195.1
- Location
- OZ010647.1:2401654-2403280[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0016 0.095 13.4 1.9 1 20 14 33 14 35 0.94 2 14 0.00066 0.04 14.5 1.9 1 23 43 66 43 66 0.97 3 14 0.57 35 5.3 0.9 1 10 86 95 86 96 0.95 4 14 0.13 8 7.3 2.4 1 23 115 138 115 138 0.94 5 14 0.68 41 5.1 1.1 2 23 152 173 151 173 0.91 6 14 3.2e-06 0.00019 21.8 0.8 2 23 184 205 183 205 0.96 7 14 6.6e-05 0.004 17.7 0.9 2 23 212 233 211 233 0.97 8 14 0.16 9.6 7.1 5.8 1 23 239 261 239 261 0.94 9 14 0.0025 0.15 12.7 4.1 1 23 267 290 267 290 0.97 10 14 0.026 1.6 9.5 1.6 1 23 298 322 298 322 0.97 11 14 0.61 37 5.2 2.0 1 23 328 350 328 350 0.95 12 14 0.059 3.6 8.4 0.3 5 23 361 380 358 380 0.91 13 14 0.00011 0.0069 16.9 0.1 1 21 388 408 388 409 0.96 14 14 0.79 48 4.9 0.5 1 19 418 436 418 438 0.88
Sequence Information
- Coding Sequence
- ATGTggagaaatatttattatgAAAATACAAATCGACCATTTAAATGTCAACATTGTAATCGTGGTTTAACAAgtgaaaaacatttaaaaaatcatgCAGCTAGATGTTCTCAACgtaattttccatataaatgtttacaatgcccaagaaaatataatgataaaattaaatataatcgtcatttaaaattagaacatgaaaaatgtaaaaaattaacaccagaaattataattaaaacaactggtttaaaaccatttaaatGTACTGTATGTAATAAAGGATTTTTAACAGTGAAAAGTGCTCGTTGCCATACAGTTCGTTGTCAGCAACGTGAAATACCATATGAATGTCGTTTTTGTCCAAgaagattttttcaaaaaattcaaagtgAAAAACATGAACGCCTTAAACACTATGCAGATATAACATCTGATATACCATATGGATTTTGgaaatgtaaaatatgtaatcgTTTATTAAGTAAAGGTTATAGTCGTAAACGTCATGAAGAATCACATTCCTTAGAAAATCGTGATATTAAACGTTGCTCATGTACGTTATGTGGTAAAGAAGTTAGTTCACCAACAGCACTGAGAGTACATATGAGAACACATTCAGAAGAACGGCCattaaaatgtcctttttgccccgcaacatttaaatattctacatCGTTAAAAACACATGAAAATTCACATACCGGGGAACGTAAATATCAATGTCAACATTGTGAAAAACGTTTTCTTACAAATACGCATCGTAAGAATCATGAAATATTACATTcaaaagagaaaaaatatgaatgttctgaatgtaatatgaaatttttacgtAAAGATTACTTAAATTCCCATTATCGTCATAAACACTTAAAGGTGCATACACGTCCATTTAAATGCCAATACAGTGAATGTAGTTCATCTTTTACagctgaaaaatatttacgtaaTCATGAACGTTTACATGAAAATGGTATACAATATAAATGTCgtttttgtgataaaaaacatatagtaAAAGGTTTAATTGAACGTCATGAATTAACCCatttaaaatctaaagaaACAATTAATTGCATAATATGTCCTAAAGTATTTGGTAGCAAAGGtggtttaaattttcatatgaaaaataaacatcCAAATAATGcaccaattaaatataaatgtggTCAATGTgaggaaatatttatatccaaAGGAGATTTACAatcacatataaaaaatatttgtagtatagctttaaaaaattttgcttGTAATATGTGTGCAGCTAGATTTACAAATGAATATGGTTTAAGATGTCATAGAGGTTGTGTACATCCTGGATGTgcgtaa
- Protein Sequence
- MWRNIYYENTNRPFKCQHCNRGLTSEKHLKNHAARCSQRNFPYKCLQCPRKYNDKIKYNRHLKLEHEKCKKLTPEIIIKTTGLKPFKCTVCNKGFLTVKSARCHTVRCQQREIPYECRFCPRRFFQKIQSEKHERLKHYADITSDIPYGFWKCKICNRLLSKGYSRKRHEESHSLENRDIKRCSCTLCGKEVSSPTALRVHMRTHSEERPLKCPFCPATFKYSTSLKTHENSHTGERKYQCQHCEKRFLTNTHRKNHEILHSKEKKYECSECNMKFLRKDYLNSHYRHKHLKVHTRPFKCQYSECSSSFTAEKYLRNHERLHENGIQYKCRFCDKKHIVKGLIERHELTHLKSKETINCIICPKVFGSKGGLNFHMKNKHPNNAPIKYKCGQCEEIFISKGDLQSHIKNICSIALKNFACNMCAARFTNEYGLRCHRGCVHPGCA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01297910;
- 90% Identity
- iTF_01297910;
- 80% Identity
- -