Basic Information

Insect: Empis livida
Gene Symbol: -
Assembly: GCA_963932195.1
Location: OZ010647.1:12496776-12498905[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1 61 4.5 5.4 1 23 343 362 343 362 0.79

2 7 6.1e-06 0.00037 21.0 0.1 1 23 368 392 368 392 0.98

3 7 1.5e-05 0.00092 19.7 0.2 1 23 398 420 398 420 0.96

4 7 0.00036 0.022 15.4 2.7 1 23 426 448 426 448 0.98

5 7 0.001 0.062 13.9 2.7 1 23 454 476 454 476 0.97

6 7 2.6e-08 1.6e-06 28.4 0.8 1 23 482 504 482 504 0.99

7 7 0.0036 0.21 12.2 5.0 1 23 510 533 510 533 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1	61	4.5	5.4	1	23	343	362	343	362	0.79
2	7	6.1e-06	0.00037	21.0	0.1	1	23	368	392	368	392	0.98
3	7	1.5e-05	0.00092	19.7	0.2	1	23	398	420	398	420	0.96
4	7	0.00036	0.022	15.4	2.7	1	23	426	448	426	448	0.98
5	7	0.001	0.062	13.9	2.7	1	23	454	476	454	476	0.97
6	7	2.6e-08	1.6e-06	28.4	0.8	1	23	482	504	482	504	0.99
7	7	0.0036	0.21	12.2	5.0	1	23	510	533	510	533	0.95

Sequence Information

Coding Sequence: atgtCAGAATCAATTATATGTCGATTATGTTTAGGAGACGAAGGAAATATGGAATATATATTCTCATCCTCAAATTCATTAGATTTAGTCCAAAAAATCTACGAATGTACAAGCTTGAAATTACAAGATTCGAATGAATTACCAAATCGTATTTGTGAAATATGTAAatcagaattaattatttggttaaaatttaaacgaCAGTgcattaattcaaataaaatattacaaagtaaatatgaaaatctgATAACTGTATCAAATGaatctataaaattagaaaaatgtaCACAAACAGATAATACTTatgatgataatttatttaataattcatttattgaaCATATTGATGAAttacaacagcaacaacaagaAGAACAATTTgatgacgatgatgatgaGGACGATAATATAGAAATAGTTGAAGATATTACAAAACATGATAccaaaaaagagaaaatattaaatatattgtcaGGACATACTGGTGAATTAACAGAATATTCAATATTAGAATATGATCATCAAGaactaaatgaatttatagATCATACATATACAGAAGTTGAAAATACATCTAAAtcaaatgtatttaaaataaatatagataaaagtGATGATGGGAATAATAGTATTattgatgataatgataataataaaaatattaatgatcatttaaatacaaataataatgataataaaatacaaatatatagtttattaaatataaatggtgAAGATGAAACAGTTGAAGTAAATGAAGAAAATGTTGATGATATTGATGAAGAGgaagataataattataatgaatctgaaaatgttgaaatattaGATTCTGATGATAATAATACAATGGATGATAATGAAAGTTTTAATGACGatgaaaatagtaataataaattacaaaaaacaaatattaatatagatgatacagaaaatcaaatacaAGATGATGATTCTAGTAGTTTATTATGGTCATCGGATaagGTTGTAAAAAGTTATGATGGTAAACGTATCTCTTACTCATATCCATGTACAATTTGTGGTCAAAtgcaaacaaatttaaaacaacataTGCGTACACATACCGAAGAATTACCATTTAAATGTCCATATGCAGGATGTGTACGAGCATTTCGTCAAGcgtcaaatttaaaaaatcatgttAATATTCATACTGGTGAAAAACCATATCCATGTCAATTATGCGATAGAAAGTTTTCCGAACCATCGGGTTTACGGTCACATATGGTATTACATACTGGtgaaagaaaatatcattGTACTGAATGTGGTAAAGATTTTGGTTGGTCTCACACATTAAAAGCCCATCAACGTATTCATACTCAAGATCGTCGCCATCCATGTTCGGTTTGTACTAAACGTTTCCTATCAGCACATGCATTAAAGAAACACGTCCGTATTCATACTGGTGAAAAACCATATGAATGTGAAATATGTGGTAAATCATTTAATACATCCGGTAATTTATCATCACATCGAAAAACACATTTAAAAGATCATCCATTTAATTGTCATTTATGTACAGAAAGATTTCagcatttaaataatttaaaaaaacatgtacAACAAATTCATAATCAagaattacatataaataaaacatcaacaacaacgaCATCGTCATCTGCAGTTTTAGGTAATGAAATTGTCCAActtaatgataataatgatgatggatataaaattgaaatattattggcTGAAGTAACAAAagatgaataa
Protein Sequence: MSESIICRLCLGDEGNMEYIFSSSNSLDLVQKIYECTSLKLQDSNELPNRICEICKSELIIWLKFKRQCINSNKILQSKYENLITVSNESIKLEKCTQTDNTYDDNLFNNSFIEHIDELQQQQQEEQFDDDDDEDDNIEIVEDITKHDTKKEKILNILSGHTGELTEYSILEYDHQELNEFIDHTYTEVENTSKSNVFKINIDKSDDGNNSIIDDNDNNKNINDHLNTNNNDNKIQIYSLLNINGEDETVEVNEENVDDIDEEEDNNYNESENVEILDSDDNNTMDDNESFNDDENSNNKLQKTNINIDDTENQIQDDDSSSLLWSSDKVVKSYDGKRISYSYPCTICGQMQTNLKQHMRTHTEELPFKCPYAGCVRAFRQASNLKNHVNIHTGEKPYPCQLCDRKFSEPSGLRSHMVLHTGERKYHCTECGKDFGWSHTLKAHQRIHTQDRRHPCSVCTKRFLSAHALKKHVRIHTGEKPYECEICGKSFNTSGNLSSHRKTHLKDHPFNCHLCTERFQHLNNLKKHVQQIHNQELHINKTSTTTTSSSAVLGNEIVQLNDNNDDGYKIEILLAEVTKDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -