Eliv008182.1
Basic Information
- Insect
- Empis livida
- Gene Symbol
- -
- Assembly
- GCA_963932195.1
- Location
- OZ010647.1:2383069-2384559[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.47 28 5.6 1.8 1 23 40 63 40 63 0.88 2 11 3.1 1.9e+02 3.0 3.3 2 23 194 215 193 215 0.96 3 11 0.00017 0.01 16.4 0.5 2 23 222 243 221 243 0.96 4 11 0.0016 0.095 13.4 5.7 1 23 249 271 249 271 0.96 5 11 4.1e-05 0.0025 18.3 5.9 1 23 277 299 277 300 0.96 6 11 5.3e-06 0.00032 21.1 0.4 1 23 314 336 314 336 0.98 7 11 0.00076 0.046 14.4 0.4 1 23 345 368 345 368 0.96 8 11 0.027 1.6 9.5 1.8 1 23 374 396 374 396 0.82 9 11 9.3e-05 0.0056 17.2 1.3 1 23 403 425 403 426 0.95 10 11 0.0014 0.087 13.5 3.5 1 23 432 454 432 454 0.92 11 11 0.071 4.3 8.1 0.4 3 23 463 484 461 484 0.97
Sequence Information
- Coding Sequence
- ATGTCGTATAATAGCagtcaaaataattatataaataatttagaaaatataataaaagcagaaaatatAGAATCAAAATGTGGTGAAATTTTCATAGCTAAAGATAGtgaattcatatttaattgtacattttgtaatgaaaactttaaaatattacaattatttagtACACATTTATATGATAATCATCCGTTCATATTAAATCCACCAGATTGTAAAGATATTGAAGTTATAAATAATGGAATTTTTGAACCAACTAATGATGGAATTTTTGAACTAATAACTAAAGTTGAAGAAGTTTTTCCAACTAAATTGTCACTTTTATGTAATGCAgcagaaaatataaacaataattcaATATCAGATAACCCAATATCGGATAATCCATTATCAGAGGAAAAATATGATTCAGATAATGATAACAATAGTAATTCAAATGAAACTAAAAATTCGagtattagaaataataatgaatcaaatattaaaactgtTAATAAATTGCTGTCgtgtaataaaacaaaatctttaaaaattaaatcaaactCTACGAAtagaacaaatattaaattaggaTTTTGGCAATGTGATATTTGTCagtttaattgtaaaaaaggTAAAGAACGAAAAGATCATGAAAAAACACATAAAGGTGTAAAACGATTAATTTGTGAAACTTGTGGAAAAGGATACACGAAAAAAAATCGTCTTGATGATCATATCCGTACACATACAGGTGAAAAGCCTTTTAAATGTCGTTTCTGTCCAAAAACATTTACCAGTCATTCATCAATGCGATCACATGATCGAACGCATATTGGATTTAAACCATTCAAATGTGATTATTgtgataaagtttttaaaactaaaaataataaacaaactCATGAACAAAAACATCATCTTAAACCaataataacagaaaattatgatGCAAAACCATATGAATGTACATTATGTggaaagaaatttcaaaaagattCAGATTTAATTGCTCATATTCAACgacattcaaataaatttaaagataaaccATTTGAATGTACAAATTGTCCATCaacatttgtaaataaaatttatttaagtgcaCATGAACGTTTATATCATCGTGgtgaatataattataaatgtgaTTATTGtgataaagtatttttaaaattaaataaaaagaaacagCATGAATTAATGCATACaagaattgaaaatgaatatgCATGTGATTTATGTGAAAAGAAATATGCAAGAAAAGAAGGTTTAGCTAAACATCGAAAATTACATCATAATACCGATTCACCATATAAATGTGATATATGtggtgaaaaatttaatagtcaaTCAGTATTTCGAGATCACtgtaaaaatcataatattaatgaaaaacaatttgGATGTGAATACTGTGAGGCAAGATTTGATTTAGAAATACGATTAAAACGACATTTAAACAAAAtgcataatataaaatcaaattttgatagtgaaaattccaattaa
- Protein Sequence
- MSYNSSQNNYINNLENIIKAENIESKCGEIFIAKDSEFIFNCTFCNENFKILQLFSTHLYDNHPFILNPPDCKDIEVINNGIFEPTNDGIFELITKVEEVFPTKLSLLCNAAENINNNSISDNPISDNPLSEEKYDSDNDNNSNSNETKNSSIRNNNESNIKTVNKLLSCNKTKSLKIKSNSTNRTNIKLGFWQCDICQFNCKKGKERKDHEKTHKGVKRLICETCGKGYTKKNRLDDHIRTHTGEKPFKCRFCPKTFTSHSSMRSHDRTHIGFKPFKCDYCDKVFKTKNNKQTHEQKHHLKPIITENYDAKPYECTLCGKKFQKDSDLIAHIQRHSNKFKDKPFECTNCPSTFVNKIYLSAHERLYHRGEYNYKCDYCDKVFLKLNKKKQHELMHTRIENEYACDLCEKKYARKEGLAKHRKLHHNTDSPYKCDICGEKFNSQSVFRDHCKNHNINEKQFGCEYCEARFDLEIRLKRHLNKMHNIKSNFDSENSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -